RNA–Protein interactions for RNA: ENST00000334895.9

TPM1-204, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-204ENST00000334895 LINC00518Q8N0U6 118 aa14.05□□□□□ -0.16
TPM1-204ENST00000334895 ZNF625Q96I27 306 aaPredicted RBP14.05□□□□□ -0.16
TPM1-204ENST00000334895 S100A12P80511 92 aa14.04□□□□□ -0.16
TPM1-204ENST00000334895 NDUFA12Q9UI09 145 aa14.04□□□□□ -0.16
TPM1-204ENST00000334895 C10orf25Q5T742 122 aa14.04□□□□□ -0.16
TPM1-204ENST00000334895 C2orf48Q96LS8 159 aa14.04□□□□□ -0.16
TPM1-204ENST00000334895 TP73-AS1Q9UF72 201 aa14.04□□□□□ -0.16
TPM1-204ENST00000334895 EPPK1P58107 5090 aaKnown RBP14.03□□□□□ -0.16
TPM1-204ENST00000334895 NDUFA1O15239 70 aa14.03□□□□□ -0.16
TPM1-204ENST00000334895 Q8N814 137 aa14.03□□□□□ -0.16
TPM1-204ENST00000334895 CKS1BP61024 79 aa14.02□□□□□ -0.16
TPM1-204ENST00000334895 UNQ6190/PRO20217Q6UXQ8 127 aa14.02□□□□□ -0.16
TPM1-204ENST00000334895 CXCL5P42830 114 aa14.01□□□□□ -0.17
TPM1-204ENST00000334895 C14orf144Q96I85 54 aa14.01□□□□□ -0.17
TPM1-204ENST00000334895 CAMK2N2Q96S95 79 aa14.01□□□□□ -0.17
TPM1-204ENST00000334895 EREGO14944 169 aa14.01□□□□□ -0.17
TPM1-204ENST00000334895 COX8AP10176 69 aa14.01□□□□□ -0.17
TPM1-204ENST00000334895 Q6ZRU5 148 aa14.01□□□□□ -0.17
TPM1-204ENST00000334895 IGLV2-33A0A075B6J2 118 aaPredicted RBP14□□□□□ -0.17
TPM1-204ENST00000334895 ZNF815PA8K554 130 aa14□□□□□ -0.17
TPM1-204ENST00000334895 F8WDY8 70 aa14□□□□□ -0.17
TPM1-204ENST00000334895 LINC00336Q6ZUF6 198 aa14□□□□□ -0.17
TPM1-204ENST00000334895 MYMXA0A1B0GTQ4 84 aa13.98□□□□□ -0.17
TPM1-204ENST00000334895 SYCNQ0VAF6 134 aa13.98□□□□□ -0.17
TPM1-204ENST00000334895 BOD1L2Q8IYS8 172 aa13.98□□□□□ -0.17
TPM1-204ENST00000334895 C6orf48Q9UBA6 75 aa13.98□□□□□ -0.17
TPM1-204ENST00000334895 CNBPP62633 177 aaKnown RBP13.97□□□□□ -0.17
TPM1-204ENST00000334895 PKD1P98161 4303 aa13.97□□□□□ -0.17
TPM1-204ENST00000334895 SFTA2Q6UW10 78 aa13.97□□□□□ -0.17
TPM1-204ENST00000334895 C9orf116Q5BN46 136 aaPredicted RBP13.96□□□□□ -0.17
TPM1-204ENST00000334895 CARD19Q96LW7 228 aa13.96□□□□□ -0.17
TPM1-204ENST00000334895 A0A0J9YXY3 114 aa13.95□□□□□ -0.18
TPM1-204ENST00000334895 PRO1933Q9H354 126 aa13.95□□□□□ -0.18
TPM1-204ENST00000334895 DLEU1O43261 78 aa13.94□□□□□ -0.18
TPM1-204ENST00000334895 FUSP35637 526 aaKnown RBP eCLIP13.94□□□□□ -0.18
TPM1-204ENST00000334895 HERV-K104P63124 156 aa13.94□□□□□ -0.18
TPM1-204ENST00000334895 HECTD4Q9Y4D8 3996 aa13.94□□□□□ -0.18
TPM1-204ENST00000334895 TRBV30A0A0K0K1B3 111 aa13.93□□□□□ -0.18
TPM1-204ENST00000334895 SLC25A34Q6PIV7 304 aa13.93□□□□□ -0.18
TPM1-204ENST00000334895 DNAH5Q8TE73 4624 aa13.92□□□□□ -0.18
TPM1-204ENST00000334895 ERG28Q9UKR5 140 aa13.91□□□□□ -0.18
TPM1-204ENST00000334895 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.9□□□□□ -0.18
TPM1-204ENST00000334895 KRTAP10-2P60368 255 aa13.9□□□□□ -0.18
TPM1-204ENST00000334895 RNF151Q2KHN1 245 aa13.9□□□□□ -0.18
TPM1-204ENST00000334895 SCGB1D4Q6XE38 83 aa13.9□□□□□ -0.19
TPM1-204ENST00000334895 LITAFQ99732 161 aa13.9□□□□□ -0.19
TPM1-204ENST00000334895 SMIM13P0DJ93 91 aa13.89□□□□□ -0.19
TPM1-204ENST00000334895 MEIG1Q5JSS6 88 aa13.89□□□□□ -0.19
TPM1-204ENST00000334895 C2orf91Q6ZV80 131 aa13.89□□□□□ -0.19
TPM1-204ENST00000334895 A0A0U1RRA0 63 aa13.88□□□□□ -0.19
TPM1-204ENST00000334895 PFN2P35080 140 aa13.88□□□□□ -0.19
TPM1-204ENST00000334895 C9orf163Q8N9P6 203 aa13.88□□□□□ -0.19
TPM1-204ENST00000334895 UQCR10Q9UDW1 63 aa13.88□□□□□ -0.19
TPM1-204ENST00000334895 LINC01620Q4KN68 170 aa13.87□□□□□ -0.19
TPM1-204ENST00000334895 ADAMTSL4-AS1Q5T5F5 129 aa13.87□□□□□ -0.19
TPM1-204ENST00000334895 A0A1B0GVY2 172 aa13.86□□□□□ -0.19
TPM1-204ENST00000334895 IGLV5-52A0A0A0MRZ9 124 aa13.85□□□□□ -0.19
TPM1-204ENST00000334895 TIMM17BO60830 172 aa13.85□□□□□ -0.19
TPM1-204ENST00000334895 COX17Q14061 63 aa13.85□□□□□ -0.19
TPM1-204ENST00000334895 MIEN1Q9BRT3 115 aa13.85□□□□□ -0.19
TPM1-204ENST00000334895 LINC00158P58513 81 aa13.84□□□□□ -0.19
TPM1-204ENST00000334895 DAND5Q8N907 189 aa13.84□□□□□ -0.19
TPM1-204ENST00000334895 LINC00587B1AMM8 73 aa13.83□□□□□ -0.2
TPM1-204ENST00000334895 NDUFC2-KCTD14E9PQ53 114 aa13.83□□□□□ -0.2
TPM1-204ENST00000334895 TLX1NBP0CAT3 122 aa13.83□□□□□ -0.2
TPM1-204ENST00000334895 PKIGQ9Y2B9 76 aa13.83□□□□□ -0.2
TPM1-204ENST00000334895 Q6ZRP5 223 aa13.82□□□□□ -0.2
TPM1-204ENST00000334895 PGPEP1Q9NXJ5 209 aa13.82□□□□□ -0.2
TPM1-204ENST00000334895 HIGD1BQ9P298 99 aa13.82□□□□□ -0.2
TPM1-204ENST00000334895 BIRC6Q9NR09 4857 aa13.82□□□□□ -0.2
TPM1-204ENST00000334895 TSTD3H0UI37 97 aa13.82□□□□□ -0.2
TPM1-204ENST00000334895 CIRBPQ14011 172 aaKnown RBP13.82□□□□□ -0.2
TPM1-204ENST00000334895 MIR7-3HGQ8N6C7 128 aa13.82□□□□□ -0.2
TPM1-204ENST00000334895 TMEM238C9JI98 176 aa13.8□□□□□ -0.2
TPM1-204ENST00000334895 SDIM1Q6ZPB5 146 aa13.8□□□□□ -0.2
TPM1-204ENST00000334895 LOC107984640A0A0U1RRK4 108 aa13.79□□□□□ -0.2
TPM1-204ENST00000334895 RPL18AQ02543 176 aaKnown RBP13.79□□□□□ -0.2
TPM1-204ENST00000334895 SPANXB1Q9NS25 103 aaPredicted RBP13.79□□□□□ -0.2
TPM1-204ENST00000334895 EIF4EBP3O60516 100 aaPredicted RBP13.79□□□□□ -0.2
TPM1-204ENST00000334895 SPANXDQ9BXN6 97 aa13.79□□□□□ -0.2
TPM1-204ENST00000334895 SND1-IT1Q9HBX3 110 aa13.79□□□□□ -0.2
TPM1-204ENST00000334895 SPANXCQ9NY87 97 aa13.79□□□□□ -0.2
TPM1-204ENST00000334895 PKHD1P08F94 4074 aa13.78□□□□□ -0.2
TPM1-204ENST00000334895 GAGE2EQ4V326 116 aa13.78□□□□□ -0.2
TPM1-204ENST00000334895 GAGE2DQ9UEU5 116 aa13.78□□□□□ -0.2
TPM1-204ENST00000334895 A0A096LNI7 61 aa13.77□□□□□ -0.21
TPM1-204ENST00000334895 SOSTDC1Q6X4U4 206 aa13.77□□□□□ -0.21
TPM1-204ENST00000334895 XAGE1AQ9HD64 81 aa13.77□□□□□ -0.21
TPM1-204ENST00000334895 HNRNPA3P51991 378 aaKnown RBP13.76□□□□□ -0.21
TPM1-204ENST00000334895 NPC2P61916 151 aa13.76□□□□□ -0.21
TPM1-204ENST00000334895 GAGE2BQ13066 116 aa13.76□□□□□ -0.21
TPM1-204ENST00000334895 PTTG1IPP53801 180 aa13.75□□□□□ -0.21
TPM1-204ENST00000334895 C9orf129Q5T035 196 aaKnown RBP13.75□□□□□ -0.21
TPM1-204ENST00000334895 DNAH8Q96JB1 4490 aa13.75□□□□□ -0.21
TPM1-204ENST00000334895 C16orf90A8MZG2 172 aa13.74□□□□□ -0.21
TPM1-204ENST00000334895 CHTF8P0CG12 524 aa13.74□□□□□ -0.21
TPM1-204ENST00000334895 SRSF9Q13242 221 aaKnown RBP eCLIP13.74□□□□□ -0.21
TPM1-204ENST00000334895 LINC00308Q8TCZ7 52 aa13.74□□□□□ -0.21
TPM1-204ENST00000334895 PANO1I0J062 215 aa13.73□□□□□ -0.21
TPM1-204ENST00000334895 DYNC1H1Q14204 4646 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms