RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 Q1T7F1 81 aa3.87□□□□□ -1.79
PTPRB-202ENST00000334414 IGHV3OR16-9A0A0B4J2B5 98 aa3.86□□□□□ -1.79
PTPRB-202ENST00000334414 ZNF318Q5VUA4 2279 aa3.86□□□□□ -1.79
PTPRB-202ENST00000334414 PRLHP81277 87 aa3.86□□□□□ -1.79
PTPRB-202ENST00000334414 SPINK1P00995 79 aa3.86□□□□□ -1.79
PTPRB-202ENST00000334414 OXLD1Q5BKU9 147 aa3.86□□□□□ -1.79
PTPRB-202ENST00000334414 ODF3L2Q3SX64 289 aa3.86□□□□□ -1.79
PTPRB-202ENST00000334414 TM2D3Q9BRN9 247 aa3.86□□□□□ -1.79
PTPRB-202ENST00000334414 X6R8D5 127 aa3.86□□□□□ -1.79
PTPRB-202ENST00000334414 PCNX3Q9H6A9 2034 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 IGLV6-57P01721 117 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 PRR3P79522 188 aaKnown RBP3.85□□□□□ -1.79
PTPRB-202ENST00000334414 Q8NA96 180 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 NOTCH4Q99466 2003 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 FSHBP01225 129 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 CRIPTQ9P021 101 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 IGLV5-52A0A0A0MRZ9 124 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 KIAA0087Q14695 138 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 LYPD5Q6UWN5 251 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 LINC01556Q5JQF7 62 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 MED13Q9UHV7 2174 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 MIR22HGQ0VDD5 57 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 SDK2Q58EX2 2172 aa3.85□□□□□ -1.79
PTPRB-202ENST00000334414 LINC01006Q8NI28 216 aa3.84□□□□□ -1.79
PTPRB-202ENST00000334414 LITAFQ99732 161 aa3.84□□□□□ -1.79
PTPRB-202ENST00000334414 FAM218AQ96MZ4 157 aa3.84□□□□□ -1.79
PTPRB-202ENST00000334414 SMCR5Q8TEV8 140 aa3.84□□□□□ -1.8
PTPRB-202ENST00000334414 LINC00313P59037 77 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 EDN2P20800 178 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 LINC01600Q96MT4 127 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 PLXNB1O43157 2135 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 USF3Q68DE3 2245 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 EPM2AB3EWF7 344 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 C22orf24Q9Y442 160 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 IGKV2D-30A0A075B6S6 120 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 H7BZZ5 65 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 IGKV2-30P06310 120 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 PCNX2A6NKB5 2137 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 BRWD1Q9NSI6 2320 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 FREM1Q5H8C1 2179 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 LINC00476Q8WZB0 136 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 COL4A2P08572 1712 aa3.83□□□□□ -1.8
PTPRB-202ENST00000334414 Q6ZRP5 223 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 Q6ZRU5 148 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 PCSK5Q92824 1860 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 SSBP3-AS1Q7Z2R9 100 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 PLA2G5P39877 138 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 ABCA1O95477 2261 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 C16orf90A8MZG2 172 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 LINC00167Q96N53 147 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 LINC00315P59091 139 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 DOPEY2Q9Y3R5 2298 aa3.82□□□□□ -1.8
PTPRB-202ENST00000334414 A0A1W2PNU3 283 aaPredicted RBP3.82□□□□□ -1.8
PTPRB-202ENST00000334414 KLK9Q2XQG4 91 aa3.81□□□□□ -1.8
PTPRB-202ENST00000334414 FHL3Q13643 280 aa3.81□□□□□ -1.8
PTPRB-202ENST00000334414 LINC00336Q6ZUF6 198 aa3.81□□□□□ -1.8
PTPRB-202ENST00000334414 AGRNO00468 2067 aa3.81□□□□□ -1.8
PTPRB-202ENST00000334414 WISP2O76076 250 aa3.81□□□□□ -1.8
PTPRB-202ENST00000334414 A8MUN3 132 aa3.8□□□□□ -1.8
PTPRB-202ENST00000334414 MDFIQ99750 246 aa3.8□□□□□ -1.8
PTPRB-202ENST00000334414 MALRD1Q5VYJ5 2156 aa3.8□□□□□ -1.8
PTPRB-202ENST00000334414 CACNA1EQ15878 2313 aa3.8□□□□□ -1.8
PTPRB-202ENST00000334414 MRPL34Q9BQ48 92 aaKnown RBP3.8□□□□□ -1.8
PTPRB-202ENST00000334414 Q9UF83 564 aa3.8□□□□□ -1.8
PTPRB-202ENST00000334414 Q6ZSN1 163 aa3.8□□□□□ -1.8
PTPRB-202ENST00000334414 CEP250Q9BV73 2442 aa3.8□□□□□ -1.8
PTPRB-202ENST00000334414 PRRC2AP48634 2157 aaKnown RBP3.79□□□□□ -1.8
PTPRB-202ENST00000334414 DEFB116Q30KQ4 102 aa3.79□□□□□ -1.8
PTPRB-202ENST00000334414 C10orf142B7Z368 130 aa3.79□□□□□ -1.8
PTPRB-202ENST00000334414 PLA2G2AP14555 144 aa3.79□□□□□ -1.8
PTPRB-202ENST00000334414 C10orf99Q6UWK7 81 aa3.79□□□□□ -1.8
PTPRB-202ENST00000334414 AKAP6Q13023 2319 aa3.79□□□□□ -1.8
PTPRB-202ENST00000334414 KCNQ1DNQ9H478 68 aa3.79□□□□□ -1.8
PTPRB-202ENST00000334414 A8MTW9 85 aa3.79□□□□□ -1.8
PTPRB-202ENST00000334414 Q75L30 129 aa3.79□□□□□ -1.8
PTPRB-202ENST00000334414 WNK2Q9Y3S1 2297 aa3.78□□□□□ -1.8
PTPRB-202ENST00000334414 K7EQZ3 153 aa3.78□□□□□ -1.8
PTPRB-202ENST00000334414 AVPP01185 164 aa3.78□□□□□ -1.8
PTPRB-202ENST00000334414 APC2O95996 2303 aa3.78□□□□□ -1.8
PTPRB-202ENST00000334414 C1orf134Q5TEV5 83 aa3.78□□□□□ -1.8
PTPRB-202ENST00000334414 COL27A1Q8IZC6 1860 aaPredicted RBP3.78□□□□□ -1.8
PTPRB-202ENST00000334414 SPTBN1Q01082 2364 aaKnown RBP3.77□□□□□ -1.81
PTPRB-202ENST00000334414 C18orf65Q6ZTR6 163 aa3.77□□□□□ -1.81
PTPRB-202ENST00000334414 PLA2G2DQ9UNK4 145 aa3.76□□□□□ -1.81
PTPRB-202ENST00000334414 POLEQ07864 2286 aa3.76□□□□□ -1.81
PTPRB-202ENST00000334414 ASB16-AS1Q495Z4 193 aa3.76□□□□□ -1.81
PTPRB-202ENST00000334414 OBSCN-AS1Q96MR7 158 aa3.76□□□□□ -1.81
PTPRB-202ENST00000334414 C19orf84I3L1E1 186 aa3.76□□□□□ -1.81
PTPRB-202ENST00000334414 A0A1B0GVX0 72 aa3.75□□□□□ -1.81
PTPRB-202ENST00000334414 PRR14LQ5THK1 2151 aa3.75□□□□□ -1.81
PTPRB-202ENST00000334414 LINC00528Q8N1L1 170 aa3.75□□□□□ -1.81
PTPRB-202ENST00000334414 FAM104AQ969W3 186 aa3.75□□□□□ -1.81
PTPRB-202ENST00000334414 DSCAML1Q8TD84 2053 aa3.74□□□□□ -1.81
PTPRB-202ENST00000334414 LUZP6Q538Z0 58 aa3.74□□□□□ -1.81
PTPRB-202ENST00000334414 TET2Q6N021 2002 aaPredicted RBP3.74□□□□□ -1.81
PTPRB-202ENST00000334414 ST20-AS1Q8NBB2 130 aa3.74□□□□□ -1.81
PTPRB-202ENST00000334414 INAFM1C9JVW0 142 aa3.74□□□□□ -1.81
PTPRB-202ENST00000334414 IGLV1-50A0A075B6I6 118 aa3.74□□□□□ -1.81
PTPRB-202ENST00000334414 PRO3102Q9H379 93 aa3.73□□□□□ -1.81
PTPRB-202ENST00000334414 C8orf17Q9NRJ1 99 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms