RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 COX7B2Q8TF08 81 aa9.5□□□□□ -0.89
SKA3-201ENST00000298260 KHDC1LQ5JSQ8 128 aa9.5□□□□□ -0.89
SKA3-201ENST00000298260 NBEAL2Q6ZNJ1 2754 aa9.5□□□□□ -0.89
SKA3-201ENST00000298260 SNURFQ9Y675 71 aa9.49□□□□□ -0.89
SKA3-201ENST00000298260 CCKP06307 115 aa9.48□□□□□ -0.89
SKA3-201ENST00000298260 SETXQ7Z333 2677 aaKnown RBP9.48□□□□□ -0.89
SKA3-201ENST00000298260 M0R2N4 97 aa9.47□□□□□ -0.89
SKA3-201ENST00000298260 PF4P02776 101 aa9.47□□□□□ -0.89
SKA3-201ENST00000298260 PLA2G2AP14555 144 aa9.47□□□□□ -0.89
SKA3-201ENST00000298260 XCL1P47992 114 aa9.47□□□□□ -0.89
SKA3-201ENST00000298260 ORMDL1Q9P0S3 153 aa9.47□□□□□ -0.89
SKA3-201ENST00000298260 IGLV4-60A0A075B6I1 120 aa9.46□□□□□ -0.89
SKA3-201ENST00000298260 CCL19Q99731 98 aa9.46□□□□□ -0.89
SKA3-201ENST00000298260 TMEM89A2RUT3 159 aa9.46□□□□□ -0.9
SKA3-201ENST00000298260 H0YGX0 51 aa9.46□□□□□ -0.9
SKA3-201ENST00000298260 UBE2L6O14933 153 aa9.46□□□□□ -0.9
SKA3-201ENST00000298260 WFDC11Q8NEX6 87 aa9.46□□□□□ -0.9
SKA3-201ENST00000298260 PKIGQ9Y2B9 76 aa9.46□□□□□ -0.9
SKA3-201ENST00000298260 FAM236DA0A1B0GTK5 79 aa9.45□□□□□ -0.9
SKA3-201ENST00000298260 FAM236CP0DP71 79 aa9.45□□□□□ -0.9
SKA3-201ENST00000298260 A8MTW9 85 aa9.44□□□□□ -0.9
SKA3-201ENST00000298260 DEFB112Q30KQ8 113 aa9.44□□□□□ -0.9
SKA3-201ENST00000298260 RMI2Q96E14 147 aa9.44□□□□□ -0.9
SKA3-201ENST00000298260 IGHV4-30-2A0A087WSY4 118 aa9.43□□□□□ -0.9
SKA3-201ENST00000298260 A0A096LNT2 108 aa9.43□□□□□ -0.9
SKA3-201ENST00000298260 K7EQD1 137 aa9.43□□□□□ -0.9
SKA3-201ENST00000298260 C1orf43Q9BWL3 253 aa9.43□□□□□ -0.9
SKA3-201ENST00000298260 TRAV10A0A0B4J240 114 aa9.43□□□□□ -0.9
SKA3-201ENST00000298260 H7BZZ5 65 aa9.43□□□□□ -0.9
SKA3-201ENST00000298260 SPATA3Q8NHX4 192 aa9.43□□□□□ -0.9
SKA3-201ENST00000298260 OVOL2Q9BRP0 275 aa9.43□□□□□ -0.9
SKA3-201ENST00000298260 MAP6D1Q9H9H5 199 aa9.43□□□□□ -0.9
SKA3-201ENST00000298260 FAM19A3Q7Z5A8 133 aa9.42□□□□□ -0.9
SKA3-201ENST00000298260 CLPSL2Q6UWE3 100 aa9.42□□□□□ -0.9
SKA3-201ENST00000298260 LYPD5Q6UWN5 251 aa9.42□□□□□ -0.9
SKA3-201ENST00000298260 LINC00474Q9P2X8 69 aa9.42□□□□□ -0.9
SKA3-201ENST00000298260 RPL35AP18077 110 aaKnown RBP9.41□□□□□ -0.9
SKA3-201ENST00000298260 NOP10Q9NPE3 64 aaKnown RBP9.41□□□□□ -0.9
SKA3-201ENST00000298260 NDUFC2O95298 119 aa9.41□□□□□ -0.9
SKA3-201ENST00000298260 INSP01308 110 aa9.41□□□□□ -0.9
SKA3-201ENST00000298260 C1orf158Q8N1D5 194 aa9.41□□□□□ -0.9
SKA3-201ENST00000298260 TRBV6-4A0A1B0GX49 114 aa9.4□□□□□ -0.9
SKA3-201ENST00000298260 PDZD2O15018 2839 aa9.4□□□□□ -0.9
SKA3-201ENST00000298260 NANOS2P60321 138 aaKnown RBP9.4□□□□□ -0.91
SKA3-201ENST00000298260 HAMPP81172 84 aa9.4□□□□□ -0.91
SKA3-201ENST00000298260 SCXQ7RTU7 201 aa9.39□□□□□ -0.91
SKA3-201ENST00000298260 IGHV3OR16-9A0A0B4J2B5 98 aa9.39□□□□□ -0.91
SKA3-201ENST00000298260 J3QLI3 93 aa9.39□□□□□ -0.91
SKA3-201ENST00000298260 C6orf226Q5I0X4 101 aa9.39□□□□□ -0.91
SKA3-201ENST00000298260 FP248Q71RG6 208 aaPredicted RBP9.39□□□□□ -0.91
SKA3-201ENST00000298260 Q8N814 137 aa9.39□□□□□ -0.91
SKA3-201ENST00000298260 MSMBP08118 114 aa9.37□□□□□ -0.91
SKA3-201ENST00000298260 UBL5Q9BZL1 73 aa9.37□□□□□ -0.91
SKA3-201ENST00000298260 OTOGQ6ZRI0 2925 aa9.37□□□□□ -0.91
SKA3-201ENST00000298260 F8WEM9 126 aa9.37□□□□□ -0.91
SKA3-201ENST00000298260 C9orf116Q5BN46 136 aaPredicted RBP9.37□□□□□ -0.91
SKA3-201ENST00000298260 A0A0U1RQV1 116 aa9.37□□□□□ -0.91
SKA3-201ENST00000298260 IBA57-AS1B1ANH7 110 aa9.37□□□□□ -0.91
SKA3-201ENST00000298260 TEP1Q99973 2627 aaKnown RBP9.36□□□□□ -0.91
SKA3-201ENST00000298260 C11orf44Q8N8P7 122 aa9.36□□□□□ -0.91
SKA3-201ENST00000298260 Q8NDZ9 215 aa9.36□□□□□ -0.91
SKA3-201ENST00000298260 DYNLRB2Q8TF09 96 aa9.35□□□□□ -0.91
SKA3-201ENST00000298260 TRGV2A0A075B6R0 118 aa9.35□□□□□ -0.91
SKA3-201ENST00000298260 C16orf95Q9H693 158 aa9.35□□□□□ -0.91
SKA3-201ENST00000298260 PRO0628Q9UI54 55 aa9.35□□□□□ -0.91
SKA3-201ENST00000298260 C6orf99Q4VX62 202 aa9.34□□□□□ -0.91
SKA3-201ENST00000298260 MRAPQ8TCY5 172 aa9.34□□□□□ -0.91
SKA3-201ENST00000298260 SERP1Q9Y6X1 66 aa9.34□□□□□ -0.91
SKA3-201ENST00000298260 ODF3L2Q3SX64 289 aa9.34□□□□□ -0.91
SKA3-201ENST00000298260 WFDC10AQ9H1F0 79 aa9.34□□□□□ -0.91
SKA3-201ENST00000298260 JMJD7-PLA2G4BH0Y9G9 81 aa9.33□□□□□ -0.92
SKA3-201ENST00000298260 NDUFC2-KCTD14E9PQ53 114 aa9.33□□□□□ -0.92
SKA3-201ENST00000298260 LY6G6DO95868 133 aa9.33□□□□□ -0.92
SKA3-201ENST00000298260 LINC01547P58512 204 aaPredicted RBP9.33□□□□□ -0.92
SKA3-201ENST00000298260 S100A7L2Q5SY68 101 aa9.33□□□□□ -0.92
SKA3-201ENST00000298260 TM2D3Q9BRN9 247 aa9.33□□□□□ -0.92
SKA3-201ENST00000298260 LAMTOR3Q9UHA4 124 aa9.32□□□□□ -0.92
SKA3-201ENST00000298260 CR1P17927 2039 aa9.32□□□□□ -0.92
SKA3-201ENST00000298260 A0A087WZ39 114 aa9.32□□□□□ -0.92
SKA3-201ENST00000298260 A0A096LPF7 62 aa9.32□□□□□ -0.92
SKA3-201ENST00000298260 TRBV10-1A0A0K0K1A3 114 aa9.32□□□□□ -0.92
SKA3-201ENST00000298260 TMEM256-PLSCR3K7ERE1 68 aa9.32□□□□□ -0.92
SKA3-201ENST00000298260 STHQ8IWL8 128 aa9.32□□□□□ -0.92
SKA3-201ENST00000298260 RBM3P98179 157 aaKnown RBP9.32□□□□□ -0.92
SKA3-201ENST00000298260 BRK1Q8WUW1 75 aa9.31□□□□□ -0.92
SKA3-201ENST00000298260 ZNF702PQ9H963 129 aa9.31□□□□□ -0.92
SKA3-201ENST00000298260 TRAV7A0A075B6U4 112 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 EPM2AB3EWF7 344 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 B4DSR2 109 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 J3QKU1 62 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 DEFB114Q30KQ6 69 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 ATP5EP2Q5VTU8 51 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 TRGV4A0A0C4DH28 118 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 A0A1W2PRX2 142 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 Q6ZVQ6 151 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 TMEM86BQ8N661 226 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 MPLKIPQ8TAP9 179 aa9.3□□□□□ -0.92
SKA3-201ENST00000298260 LINC00959A0A1B0GUT2 108 aa9.29□□□□□ -0.92
SKA3-201ENST00000298260 FAM229BQ4G0N7 80 aa9.29□□□□□ -0.92
SKA3-201ENST00000298260 Q6ZQT0 140 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 154.8 ms