RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 CHAC1Q9BUX1 264 aa13.75□□□□□ -0.21
CLN3-245ENST00000636172 C1orf43Q9BWL3 253 aa13.75□□□□□ -0.21
CLN3-245ENST00000636172 IGKV2D-24A0A075B6R9 120 aa13.74□□□□□ -0.21
CLN3-245ENST00000636172 C11orf86A6NJI1 115 aa13.74□□□□□ -0.21
CLN3-245ENST00000636172 LOC105371267A0A1B0GV96 52 aa13.74□□□□□ -0.21
CLN3-245ENST00000636172 C20orf202A1L168 122 aa13.74□□□□□ -0.21
CLN3-245ENST00000636172 DPM2O94777 84 aa13.74□□□□□ -0.21
CLN3-245ENST00000636172 HERVK_113P63121 156 aa13.74□□□□□ -0.21
CLN3-245ENST00000636172 SEC11AP67812 179 aa13.74□□□□□ -0.21
CLN3-245ENST00000636172 CD164L2Q6UWJ8 174 aa13.74□□□□□ -0.21
CLN3-245ENST00000636172 GEMIN7Q9H840 131 aaKnown RBP13.74□□□□□ -0.21
CLN3-245ENST00000636172 IGHV3OR16-9A0A0B4J2B5 98 aa13.73□□□□□ -0.21
CLN3-245ENST00000636172 GAGE12HA6NDE8 117 aa13.73□□□□□ -0.21
CLN3-245ENST00000636172 AKR1D1P51857 326 aa13.73□□□□□ -0.21
CLN3-245ENST00000636172 FOXI1Q12951 378 aa13.73□□□□□ -0.21
CLN3-245ENST00000636172 HYDINQ4G0P3 5121 aa13.72□□□□□ -0.21
CLN3-245ENST00000636172 PLNP26678 52 aa13.72□□□□□ -0.21
CLN3-245ENST00000636172 RMI2Q96E14 147 aa13.72□□□□□ -0.21
CLN3-245ENST00000636172 DNAH10Q8IVF4 4471 aa13.72□□□□□ -0.21
CLN3-245ENST00000636172 DNAH2Q9P225 4427 aa13.71□□□□□ -0.21
CLN3-245ENST00000636172 IGLV5-45A0A087WSX0 123 aa13.71□□□□□ -0.21
CLN3-245ENST00000636172 IGKCP01834 107 aa13.71□□□□□ -0.21
CLN3-245ENST00000636172 CDKN2A-AS1Q9UH64 79 aa13.71□□□□□ -0.21
CLN3-245ENST00000636172 SCGB1D1O95968 90 aa13.7□□□□□ -0.22
CLN3-245ENST00000636172 ZNF22P17026 224 aaPredicted RBP13.7□□□□□ -0.22
CLN3-245ENST00000636172 LINC00469Q8N7U9 141 aa13.7□□□□□ -0.22
CLN3-245ENST00000636172 JOSD1Q15040 202 aaPredicted RBP13.69□□□□□ -0.22
CLN3-245ENST00000636172 C5orf38Q86SI9 138 aa13.69□□□□□ -0.22
CLN3-245ENST00000636172 ATOH7Q8N100 152 aa13.68□□□□□ -0.22
CLN3-245ENST00000636172 TM2D2Q9BX73 214 aa13.68□□□□□ -0.22
CLN3-245ENST00000636172 A0A087WZ39 114 aa13.67□□□□□ -0.22
CLN3-245ENST00000636172 COX7A2LO14548 114 aa13.67□□□□□ -0.22
CLN3-245ENST00000636172 PYY3Q5JQD4 70 aa13.67□□□□□ -0.22
CLN3-245ENST00000636172 TMEM170BQ5T4T1 132 aa13.67□□□□□ -0.22
CLN3-245ENST00000636172 Q6ZRN7 208 aaPredicted RBP13.67□□□□□ -0.22
CLN3-245ENST00000636172 C6orf223Q8N319 242 aa13.67□□□□□ -0.22
CLN3-245ENST00000636172 MAPKAPK5-AS1Q8N8E1 139 aa13.67□□□□□ -0.22
CLN3-245ENST00000636172 COX11Q9Y6N1 276 aa13.67□□□□□ -0.22
CLN3-245ENST00000636172 C1orf134Q5TEV5 83 aa13.64□□□□□ -0.23
CLN3-245ENST00000636172 H3BRM9 83 aa13.64□□□□□ -0.23
CLN3-245ENST00000636172 SPINK8P0C7L1 97 aa13.64□□□□□ -0.23
CLN3-245ENST00000636172 TMEM223A0PJW6 202 aa13.63□□□□□ -0.23
CLN3-245ENST00000636172 SMIM1B2RUZ4 78 aa13.62□□□□□ -0.23
CLN3-245ENST00000636172 PSCAO43653 123 aa13.62□□□□□ -0.23
CLN3-245ENST00000636172 LINC01561Q8N1V8 128 aa13.62□□□□□ -0.23
CLN3-245ENST00000636172 MALP21145 153 aa13.61□□□□□ -0.23
CLN3-245ENST00000636172 STPG4Q8N801 248 aa13.61□□□□□ -0.23
CLN3-245ENST00000636172 MAJINQ3KP22 176 aa13.6□□□□□ -0.23
CLN3-245ENST00000636172 EPPK1P58107 5090 aaKnown RBP13.6□□□□□ -0.23
CLN3-245ENST00000636172 IGHV3-64A0A075B6Q5 118 aa13.59□□□□□ -0.23
CLN3-245ENST00000636172 hDV102S1A0JD36 115 aa13.59□□□□□ -0.23
CLN3-245ENST00000636172 CDPF1Q6NVV7 123 aa13.59□□□□□ -0.23
CLN3-245ENST00000636172 IGLV5-39A0A0G2JS06 123 aa13.59□□□□□ -0.23
CLN3-245ENST00000636172 C15orf56Q8N910 161 aa13.59□□□□□ -0.23
CLN3-245ENST00000636172 DNAH17Q9UFH2 4485 aa13.58□□□□□ -0.24
CLN3-245ENST00000636172 IGHV1-58A0A0C4DH39 117 aa13.57□□□□□ -0.24
CLN3-245ENST00000636172 USP17L23D6RBM5 183 aa13.57□□□□□ -0.24
CLN3-245ENST00000636172 LECT2O14960 151 aa13.57□□□□□ -0.24
CLN3-245ENST00000636172 APOMO95445 188 aa13.57□□□□□ -0.24
CLN3-245ENST00000636172 HERVK_113P61574 105 aa13.57□□□□□ -0.24
CLN3-245ENST00000636172 WFDC2Q14508 124 aa13.57□□□□□ -0.24
CLN3-245ENST00000636172 ORAOV1Q8WV07 137 aa13.57□□□□□ -0.24
CLN3-245ENST00000636172 ANKRD39Q53RE8 183 aa13.56□□□□□ -0.24
CLN3-245ENST00000636172 RTL8CO15255 209 aa13.55□□□□□ -0.24
CLN3-245ENST00000636172 FRAS1Q86XX4 4008 aa13.55□□□□□ -0.24
CLN3-245ENST00000636172 LRCOL1A6NCL2 159 aa13.54□□□□□ -0.24
CLN3-245ENST00000636172 E9PLD3 99 aa13.54□□□□□ -0.24
CLN3-245ENST00000636172 CFAP161Q6P656 301 aa13.54□□□□□ -0.24
CLN3-245ENST00000636172 SMIM6P0DI80 62 aa13.54□□□□□ -0.24
CLN3-245ENST00000636172 HIGD2BQ4VC39 106 aa13.54□□□□□ -0.24
CLN3-245ENST00000636172 GVQW2A0A096LPI5 108 aaPredicted RBP13.53□□□□□ -0.24
CLN3-245ENST00000636172 IGKV2D-26A0A0A0MRZ7 120 aa13.53□□□□□ -0.24
CLN3-245ENST00000636172 HSBP1L1C9JCN9 74 aa13.53□□□□□ -0.24
CLN3-245ENST00000636172 SPAG11BQ08648 103 aa13.53□□□□□ -0.24
CLN3-245ENST00000636172 KIAA0087Q14695 138 aa13.53□□□□□ -0.24
CLN3-245ENST00000636172 TOMM7Q9P0U1 55 aa13.53□□□□□ -0.24
CLN3-245ENST00000636172 LEPROTO15243 131 aa13.52□□□□□ -0.25
CLN3-245ENST00000636172 TSPEAR-AS2P59090 65 aa13.52□□□□□ -0.25
CLN3-245ENST00000636172 Q8IZM0 81 aa13.52□□□□□ -0.25
CLN3-245ENST00000636172 COX7B2Q8TF08 81 aa13.52□□□□□ -0.25
CLN3-245ENST00000636172 LINC00526Q96FQ7 95 aa13.52□□□□□ -0.25
CLN3-245ENST00000636172 VAMP8Q9BV40 100 aa13.52□□□□□ -0.25
CLN3-245ENST00000636172 BIRC6Q9NR09 4857 aa13.51□□□□□ -0.25
CLN3-245ENST00000636172 PLEKHB2Q96CS7 222 aa13.5□□□□□ -0.25
CLN3-245ENST00000636172 PAM16Q9Y3D7 125 aa13.5□□□□□ -0.25
CLN3-245ENST00000636172 A0A087WTM6 91 aa13.49□□□□□ -0.25
CLN3-245ENST00000636172 J3QQQ9 107 aa13.49□□□□□ -0.25
CLN3-245ENST00000636172 PRSS2P07478 247 aa13.49□□□□□ -0.25
CLN3-245ENST00000636172 ZNF561-AS1K7EIQ3 104 aa13.49□□□□□ -0.25
CLN3-245ENST00000636172 FAT2Q9NYQ8 4349 aa13.48□□□□□ -0.25
CLN3-245ENST00000636172 TNP2Q05952 138 aa13.48□□□□□ -0.25
CLN3-245ENST00000636172 C6orf226Q5I0X4 101 aa13.48□□□□□ -0.25
CLN3-245ENST00000636172 NMUP48645 174 aa13.47□□□□□ -0.25
CLN3-245ENST00000636172 SPATA45Q537H7 98 aa13.47□□□□□ -0.25
CLN3-245ENST00000636172 NTN5Q8WTR8 489 aaPredicted RBP13.47□□□□□ -0.25
CLN3-245ENST00000636172 LGALS3P17931 250 aaKnown RBP13.46□□□□□ -0.25
CLN3-245ENST00000636172 C14orf177Q52M58 125 aa13.46□□□□□ -0.25
CLN3-245ENST00000636172 C2orf82Q6UX34 121 aa13.46□□□□□ -0.25
CLN3-245ENST00000636172 TTTY13Q9BZ97 58 aa13.45□□□□□ -0.26
CLN3-245ENST00000636172 Q8N814 137 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms