RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 A0A087WTM6 91 aa13.03□□□□□ -0.32
UPF3A-211ENST00000618700 GAGE12HA6NDE8 117 aa13.03□□□□□ -0.32
UPF3A-211ENST00000618700 XCL1P47992 114 aa13.03□□□□□ -0.32
UPF3A-211ENST00000618700 WFDC2Q14508 124 aa13.03□□□□□ -0.32
UPF3A-211ENST00000618700 COA6Q5JTJ3 125 aaKnown RBP13.03□□□□□ -0.32
UPF3A-211ENST00000618700 FAM19A2Q8N3H0 131 aa13.03□□□□□ -0.32
UPF3A-211ENST00000618700 BIRC6Q9NR09 4857 aa13.03□□□□□ -0.32
UPF3A-211ENST00000618700 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-211ENST00000618700 FOXI1Q12951 378 aa13.02□□□□□ -0.33
UPF3A-211ENST00000618700 BAALCQ8WXS3 180 aa13.02□□□□□ -0.33
UPF3A-211ENST00000618700 C2orf88Q9BSF0 95 aa13.02□□□□□ -0.33
UPF3A-211ENST00000618700 A0A1B0GVY2 172 aa13.01□□□□□ -0.33
UPF3A-211ENST00000618700 ATP5LO75964 103 aa13.01□□□□□ -0.33
UPF3A-211ENST00000618700 UBE2D1P51668 147 aa13.01□□□□□ -0.33
UPF3A-211ENST00000618700 CD164L2Q6UWJ8 174 aa13.01□□□□□ -0.33
UPF3A-211ENST00000618700 FAM19A3Q7Z5A8 133 aa12.99□□□□□ -0.33
UPF3A-211ENST00000618700 LECT2O14960 151 aa12.98□□□□□ -0.33
UPF3A-211ENST00000618700 LINC00242Q5T6M2 205 aa12.98□□□□□ -0.33
UPF3A-211ENST00000618700 CST9LQ9H4G1 147 aa12.98□□□□□ -0.33
UPF3A-211ENST00000618700 USP17L23D6RBM5 183 aa12.97□□□□□ -0.33
UPF3A-211ENST00000618700 PMVKQ15126 192 aa12.97□□□□□ -0.33
UPF3A-211ENST00000618700 IGHV3OR16-9A0A0B4J2B5 98 aa12.96□□□□□ -0.33
UPF3A-211ENST00000618700 NDUFA6P56556 154 aa12.96□□□□□ -0.33
UPF3A-211ENST00000618700 Q8N814 137 aa12.96□□□□□ -0.33
UPF3A-211ENST00000618700 IFI27L1Q96BM0 104 aa12.96□□□□□ -0.33
UPF3A-211ENST00000618700 LEPROTL1O95214 131 aa12.95□□□□□ -0.34
UPF3A-211ENST00000618700 PKHD1P08F94 4074 aa12.94□□□□□ -0.34
UPF3A-211ENST00000618700 COX7A2LO14548 114 aa12.94□□□□□ -0.34
UPF3A-211ENST00000618700 COX6A2Q02221 97 aa12.94□□□□□ -0.34
UPF3A-211ENST00000618700 C15orf56Q8N910 161 aa12.94□□□□□ -0.34
UPF3A-211ENST00000618700 A0A0J9YXV3 536 aa12.93□□□□□ -0.34
UPF3A-211ENST00000618700 SEC11AP67812 179 aa12.93□□□□□ -0.34
UPF3A-211ENST00000618700 C14orf177Q52M58 125 aa12.93□□□□□ -0.34
UPF3A-211ENST00000618700 C5orf38Q86SI9 138 aa12.92□□□□□ -0.34
UPF3A-211ENST00000618700 PACRGQ96M98 296 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-211ENST00000618700 HSPB8Q9UJY1 196 aa12.92□□□□□ -0.34
UPF3A-211ENST00000618700 TRAV12-1A0A0B4J245 112 aa12.91□□□□□ -0.34
UPF3A-211ENST00000618700 TINCRA0A1B0GVN0 87 aa12.91□□□□□ -0.34
UPF3A-211ENST00000618700 PRSS1P07477 247 aa12.91□□□□□ -0.34
UPF3A-211ENST00000618700 FABP4P15090 132 aa12.91□□□□□ -0.34
UPF3A-211ENST00000618700 KRTAP10-2P60368 255 aa12.91□□□□□ -0.34
UPF3A-211ENST00000618700 HERVK_113P63121 156 aa12.91□□□□□ -0.34
UPF3A-211ENST00000618700 IGLV4-69A0A075B6H9 119 aa12.9□□□□□ -0.34
UPF3A-211ENST00000618700 A0A087WZ39 114 aa12.9□□□□□ -0.34
UPF3A-211ENST00000618700 GVQW2A0A096LPI5 108 aaPredicted RBP12.9□□□□□ -0.34
UPF3A-211ENST00000618700 IGHV1-58A0A0C4DH39 117 aa12.9□□□□□ -0.34
UPF3A-211ENST00000618700 CFAP161Q6P656 301 aa12.9□□□□□ -0.34
UPF3A-211ENST00000618700 SPATA12Q7Z6I5 190 aa12.9□□□□□ -0.34
UPF3A-211ENST00000618700 DNAH5Q8TE73 4624 aa12.9□□□□□ -0.34
UPF3A-211ENST00000618700 IGLV5-45A0A087WSX0 123 aa12.89□□□□□ -0.35
UPF3A-211ENST00000618700 IGLC3P0DOY3 106 aa12.89□□□□□ -0.35
UPF3A-211ENST00000618700 MALP21145 153 aa12.89□□□□□ -0.35
UPF3A-211ENST00000618700 NTN5Q8WTR8 489 aaPredicted RBP12.89□□□□□ -0.35
UPF3A-211ENST00000618700 GEMIN7Q9H840 131 aaKnown RBP12.89□□□□□ -0.35
UPF3A-211ENST00000618700 LINC01561Q8N1V8 128 aa12.88□□□□□ -0.35
UPF3A-211ENST00000618700 CDKN2A-AS1Q9UH64 79 aa12.87□□□□□ -0.35
UPF3A-211ENST00000618700 DYNC1H1Q14204 4646 aaKnown RBP12.87□□□□□ -0.35
UPF3A-211ENST00000618700 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.86□□□□□ -0.35
UPF3A-211ENST00000618700 hDV102S1A0JD36 115 aa12.86□□□□□ -0.35
UPF3A-211ENST00000618700 HIGD2BQ4VC39 106 aa12.86□□□□□ -0.35
UPF3A-211ENST00000618700 CHAC1Q9BUX1 264 aa12.86□□□□□ -0.35
UPF3A-211ENST00000618700 CHTOPQ9Y3Y2 248 aaKnown RBP12.86□□□□□ -0.35
UPF3A-211ENST00000618700 IGHV3-64A0A075B6Q5 118 aa12.85□□□□□ -0.35
UPF3A-211ENST00000618700 APOMO95445 188 aa12.85□□□□□ -0.35
UPF3A-211ENST00000618700 FUSP35637 526 aaKnown RBP eCLIP12.85□□□□□ -0.35
UPF3A-211ENST00000618700 ODF1Q14990 250 aa12.85□□□□□ -0.35
UPF3A-211ENST00000618700 HIST3H2BBQ8N257 126 aa12.85□□□□□ -0.35
UPF3A-211ENST00000618700 LINC00469Q8N7U9 141 aa12.85□□□□□ -0.35
UPF3A-211ENST00000618700 C11orf86A6NJI1 115 aa12.84□□□□□ -0.35
UPF3A-211ENST00000618700 F8VRH5 84 aa12.84□□□□□ -0.35
UPF3A-211ENST00000618700 S100A6P06703 90 aa12.84□□□□□ -0.35
UPF3A-211ENST00000618700 OR10D4PQ8NGN7 298 aa12.84□□□□□ -0.35
UPF3A-211ENST00000618700 MRPL35Q9NZE8 188 aaKnown RBP12.84□□□□□ -0.35
UPF3A-211ENST00000618700 H0Y8G0 127 aa12.83□□□□□ -0.36
UPF3A-211ENST00000618700 ZNF22P17026 224 aaPredicted RBP12.83□□□□□ -0.36
UPF3A-211ENST00000618700 MAP1LC3CQ9BXW4 147 aa12.83□□□□□ -0.36
UPF3A-211ENST00000618700 IGLV5-52A0A0A0MRZ9 124 aa12.82□□□□□ -0.36
UPF3A-211ENST00000618700 SLPIP03973 132 aa12.82□□□□□ -0.36
UPF3A-211ENST00000618700 CNBPP62633 177 aaKnown RBP12.82□□□□□ -0.36
UPF3A-211ENST00000618700 ORAOV1Q8WV07 137 aa12.82□□□□□ -0.36
UPF3A-211ENST00000618700 SMIM1B2RUZ4 78 aa12.81□□□□□ -0.36
UPF3A-211ENST00000618700 SPAG11BQ08648 103 aa12.81□□□□□ -0.36
UPF3A-211ENST00000618700 SYS1-DBNDD2H3BUS1 97 aa12.8□□□□□ -0.36
UPF3A-211ENST00000618700 LINC00526Q96FQ7 95 aa12.8□□□□□ -0.36
UPF3A-211ENST00000618700 LRP1BQ9NZR2 4599 aa12.79□□□□□ -0.36
UPF3A-211ENST00000618700 C5orf52A6NGY3 159 aa12.79□□□□□ -0.36
UPF3A-211ENST00000618700 H3BRM9 83 aa12.79□□□□□ -0.36
UPF3A-211ENST00000618700 ZNF561-AS1K7EIQ3 104 aa12.79□□□□□ -0.36
UPF3A-211ENST00000618700 KIAA0087Q14695 138 aa12.79□□□□□ -0.36
UPF3A-211ENST00000618700 HIST1H2BLQ99880 126 aa12.79□□□□□ -0.36
UPF3A-211ENST00000618700 C3orf79P0CE67 100 aa12.78□□□□□ -0.36
UPF3A-211ENST00000618700 SNRPEP62304 92 aaKnown RBP12.78□□□□□ -0.36
UPF3A-211ENST00000618700 C2orf48Q96LS8 159 aa12.78□□□□□ -0.36
UPF3A-211ENST00000618700 C16orf90A8MZG2 172 aa12.77□□□□□ -0.37
UPF3A-211ENST00000618700 SPINK8P0C7L1 97 aa12.77□□□□□ -0.37
UPF3A-211ENST00000618700 IGLV5-39A0A0G2JS06 123 aa12.76□□□□□ -0.37
UPF3A-211ENST00000618700 PLNP26678 52 aa12.76□□□□□ -0.37
UPF3A-211ENST00000618700 S100A2P29034 98 aa12.76□□□□□ -0.37
UPF3A-211ENST00000618700 TMEM170BQ5T4T1 132 aa12.76□□□□□ -0.37
UPF3A-211ENST00000618700 PET117Q6UWS5 81 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms