RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 F8W036 122 aa4.7□□□□□ -1.66
CUX1-219ENST00000606749 RNF151Q2KHN1 245 aa4.7□□□□□ -1.66
CUX1-219ENST00000606749 C9orf116Q5BN46 136 aaPredicted RBP4.7□□□□□ -1.66
CUX1-219ENST00000606749 OPRPNQ99935 248 aaPredicted RBP4.7□□□□□ -1.66
CUX1-219ENST00000606749 SMDT1Q9H4I9 107 aa4.7□□□□□ -1.66
CUX1-219ENST00000606749 A0A1B0GXF2 115 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 A6NJY4 79 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 D6R8Y8 96 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 NPYP01303 97 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 S100A8P05109 93 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 HBBP68871 147 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 MRPS36P82909 103 aaKnown RBP4.69□□□□□ -1.66
CUX1-219ENST00000606749 SPAG11BQ08648 103 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 MRPL54Q6P161 138 aaKnown RBP4.69□□□□□ -1.66
CUX1-219ENST00000606749 OR10D4PQ8NGN7 298 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 SMIM2Q9BVW6 85 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 SPANXA1Q9NS26 97 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 TNXBP22105 4242 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 UBR4Q5T4S7 5183 aa4.69□□□□□ -1.66
CUX1-219ENST00000606749 F8WDY8 70 aa4.68□□□□□ -1.66
CUX1-219ENST00000606749 PPBPP02775 128 aa4.68□□□□□ -1.66
CUX1-219ENST00000606749 RPL18AQ02543 176 aaKnown RBP4.68□□□□□ -1.66
CUX1-219ENST00000606749 PHF5AQ7RTV0 110 aaKnown RBP4.68□□□□□ -1.66
CUX1-219ENST00000606749 ORAOV1Q8WV07 137 aa4.68□□□□□ -1.66
CUX1-219ENST00000606749 MRPL35Q9NZE8 188 aaKnown RBP4.68□□□□□ -1.66
CUX1-219ENST00000606749 PSORS1C2Q9UIG4 136 aa4.68□□□□□ -1.66
CUX1-219ENST00000606749 MT-ND6P03923 174 aa4.67□□□□□ -1.66
CUX1-219ENST00000606749 C10orf25Q5T742 122 aa4.67□□□□□ -1.66
CUX1-219ENST00000606749 UNQ6190/PRO20217Q6UXQ8 127 aa4.67□□□□□ -1.66
CUX1-219ENST00000606749 IMMP2LQ96T52 175 aa4.67□□□□□ -1.66
CUX1-219ENST00000606749 IFITM10A6NMD0 228 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 PRSS47A8MTI9 375 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 NDUFA1O15239 70 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 TLX1NBP0CAT3 122 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 RAB5AP20339 215 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 KIAA0087Q14695 138 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 C1orf137Q5JT78 98 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 TMEM136Q6ZRR5 245 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 ORMDL3Q8N138 153 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 PRELID3AQ96N28 172 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 PYGO1Q9Y3Y4 419 aa4.66□□□□□ -1.66
CUX1-219ENST00000606749 IGLV4-3A0A075B6K6 122 aa4.65□□□□□ -1.67
CUX1-219ENST00000606749 A0A087WZ39 114 aa4.65□□□□□ -1.67
CUX1-219ENST00000606749 FAM168BA1KXE4 195 aa4.65□□□□□ -1.67
CUX1-219ENST00000606749 IFI27P40305 119 aaPredicted RBP4.65□□□□□ -1.67
CUX1-219ENST00000606749 LINC00242Q5T6M2 205 aa4.65□□□□□ -1.67
CUX1-219ENST00000606749 ATP5L2Q7Z4Y8 100 aa4.65□□□□□ -1.67
CUX1-219ENST00000606749 KRTAP11-1Q8IUC1 163 aa4.65□□□□□ -1.67
CUX1-219ENST00000606749 C6orf48Q9UBA6 75 aa4.65□□□□□ -1.67
CUX1-219ENST00000606749 TGIF2-C20orf24A0A0A6YYL0 155 aa4.64□□□□□ -1.67
CUX1-219ENST00000606749 LOC100996750A0A140TA64 210 aa4.64□□□□□ -1.67
CUX1-219ENST00000606749 LOC389332A0A1B0GUA5 103 aa4.64□□□□□ -1.67
CUX1-219ENST00000606749 IGLV7-43P04211 117 aa4.64□□□□□ -1.67
CUX1-219ENST00000606749 GAGE2EQ4V326 116 aa4.64□□□□□ -1.67
CUX1-219ENST00000606749 KRTAP7-1Q8IUC3 87 aa4.64□□□□□ -1.67
CUX1-219ENST00000606749 TMEM141Q96I45 108 aa4.64□□□□□ -1.67
CUX1-219ENST00000606749 KRTAP4-6Q9BYQ5 205 aa4.64□□□□□ -1.67
CUX1-219ENST00000606749 GAGE2DQ9UEU5 116 aa4.64□□□□□ -1.67
CUX1-219ENST00000606749 UBE2D1P51668 147 aa4.63□□□□□ -1.67
CUX1-219ENST00000606749 ZC2HC1BQ5TFG8 222 aa4.63□□□□□ -1.67
CUX1-219ENST00000606749 C2orf82Q6UX34 121 aa4.63□□□□□ -1.67
CUX1-219ENST00000606749 TEX43Q6ZNM6 134 aa4.63□□□□□ -1.67
CUX1-219ENST00000606749 LINC01561Q8N1V8 128 aa4.63□□□□□ -1.67
CUX1-219ENST00000606749 DIRC1Q969H9 104 aa4.63□□□□□ -1.67
CUX1-219ENST00000606749 MAP1LC3AQ9H492 121 aa4.63□□□□□ -1.67
CUX1-219ENST00000606749 LAMTOR2Q9Y2Q5 125 aa4.63□□□□□ -1.67
CUX1-219ENST00000606749 TRBV30A0A0K0K1B3 111 aa4.62□□□□□ -1.67
CUX1-219ENST00000606749 MT-ND4LP03901 98 aa4.62□□□□□ -1.67
CUX1-219ENST00000606749 LINC00173Q6ZV60 143 aa4.62□□□□□ -1.67
CUX1-219ENST00000606749 FAM19A5Q7Z5A7 132 aaPredicted RBP4.62□□□□□ -1.67
CUX1-219ENST00000606749 Q8N8P6 123 aa4.62□□□□□ -1.67
CUX1-219ENST00000606749 PRR26Q8N8Z3 221 aa4.62□□□□□ -1.67
CUX1-219ENST00000606749 ANAPC16Q96DE5 110 aa4.62□□□□□ -1.67
CUX1-219ENST00000606749 AMELXQ99217 191 aa4.62□□□□□ -1.67
CUX1-219ENST00000606749 VCX2Q9H322 139 aa4.62□□□□□ -1.67
CUX1-219ENST00000606749 LRP2P98164 4655 aa4.61□□□□□ -1.67
CUX1-219ENST00000606749 IGIPA6NJ69 53 aa4.61□□□□□ -1.67
CUX1-219ENST00000606749 NDUFC2-KCTD14E9PQ53 114 aa4.61□□□□□ -1.67
CUX1-219ENST00000606749 H0Y9J4 135 aa4.61□□□□□ -1.67
CUX1-219ENST00000606749 PNRC1Q12796 327 aaPredicted RBP4.61□□□□□ -1.67
CUX1-219ENST00000606749 C9orf129Q5T035 196 aaKnown RBP4.61□□□□□ -1.67
CUX1-219ENST00000606749 C2orf66Q6UXQ4 117 aa4.61□□□□□ -1.67
CUX1-219ENST00000606749 PACRGQ96M98 296 aaPredicted RBP4.61□□□□□ -1.67
CUX1-219ENST00000606749 C2orf88Q9BSF0 95 aa4.61□□□□□ -1.67
CUX1-219ENST00000606749 CYSLTR1Q9Y271 337 aa4.61□□□□□ -1.67
CUX1-219ENST00000606749 K7EMI3 77 aa4.6□□□□□ -1.67
CUX1-219ENST00000606749 M0QXV9 152 aa4.6□□□□□ -1.67
CUX1-219ENST00000606749 NPSP0C0P6 89 aa4.6□□□□□ -1.67
CUX1-219ENST00000606749 ORMDL2Q53FV1 153 aa4.6□□□□□ -1.67
CUX1-219ENST00000606749 C6orf226Q5I0X4 101 aa4.6□□□□□ -1.67
CUX1-219ENST00000606749 Q6ZN92 141 aa4.6□□□□□ -1.67
CUX1-219ENST00000606749 FAM19A3Q7Z5A8 133 aa4.6□□□□□ -1.67
CUX1-219ENST00000606749 PRSS2P07478 247 aa4.59□□□□□ -1.67
CUX1-219ENST00000606749 KRTAP1-4P0C5Y4 121 aa4.59□□□□□ -1.67
CUX1-219ENST00000606749 CKS1BP61024 79 aa4.59□□□□□ -1.67
CUX1-219ENST00000606749 UBE2BP63146 152 aa4.59□□□□□ -1.67
CUX1-219ENST00000606749 CTDSP1Q9GZU7 261 aa4.59□□□□□ -1.67
CUX1-219ENST00000606749 NXT2Q9NPJ8 142 aaKnown RBP4.59□□□□□ -1.67
CUX1-219ENST00000606749 TOMM7Q9P0U1 55 aa4.59□□□□□ -1.67
CUX1-219ENST00000606749 IGLV1-50A0A075B6I6 118 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms