RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 RPL37AP8A6NKH3 93 aa14.86□□□□□ -0.03
UPF1-207ENST00000599848 B5MCH6 92 aa14.86□□□□□ -0.03
UPF1-207ENST00000599848 TP73-AS1Q9UF72 201 aa14.86□□□□□ -0.03
UPF1-207ENST00000599848 POLR2KP53803 58 aaKnown RBP14.85□□□□□ -0.03
UPF1-207ENST00000599848 Q6ZTC4 211 aa14.85□□□□□ -0.03
UPF1-207ENST00000599848 Q6ZVQ6 151 aa14.85□□□□□ -0.03
UPF1-207ENST00000599848 FAM19A3Q7Z5A8 133 aa14.84□□□□□ -0.03
UPF1-207ENST00000599848 Q6ZS46 218 aa14.83□□□□□ -0.04
UPF1-207ENST00000599848 FAM236DA0A1B0GTK5 79 aa14.82□□□□□ -0.04
UPF1-207ENST00000599848 FAM236CP0DP71 79 aa14.82□□□□□ -0.04
UPF1-207ENST00000599848 ZNF295-AS1Q8N0V1 137 aa14.82□□□□□ -0.04
UPF1-207ENST00000599848 RETNQ9HD89 108 aa14.82□□□□□ -0.04
UPF1-207ENST00000599848 C3orf84H3BNL1 204 aa14.82□□□□□ -0.04
UPF1-207ENST00000599848 CRIP1P50238 77 aa14.81□□□□□ -0.04
UPF1-207ENST00000599848 CIRBP-AS1Q8TBR5 109 aa14.81□□□□□ -0.04
UPF1-207ENST00000599848 C1orf137Q5JT78 98 aa14.8□□□□□ -0.04
UPF1-207ENST00000599848 SLPIP03973 132 aa14.8□□□□□ -0.04
UPF1-207ENST00000599848 NCOA6Q14686 2063 aaPredicted RBP14.8□□□□□ -0.04
UPF1-207ENST00000599848 LINC00337Q8N6G1 96 aa14.8□□□□□ -0.04
UPF1-207ENST00000599848 LINC01561Q8N1V8 128 aa14.8□□□□□ -0.04
UPF1-207ENST00000599848 PRYO14603 147 aa14.79□□□□□ -0.04
UPF1-207ENST00000599848 NDUFV3P56181 108 aaKnown RBP14.79□□□□□ -0.04
UPF1-207ENST00000599848 C6orf223Q8N319 242 aa14.79□□□□□ -0.04
UPF1-207ENST00000599848 WFDC13Q8IUB5 93 aa14.79□□□□□ -0.04
UPF1-207ENST00000599848 PTH2Q96A98 100 aa14.79□□□□□ -0.04
UPF1-207ENST00000599848 NCOR2Q9Y618 2525 aa14.79□□□□□ -0.04
UPF1-207ENST00000599848 ENHOQ6UWT2 76 aa14.79□□□□□ -0.04
UPF1-207ENST00000599848 LINC01556Q5JQF7 62 aa14.78□□□□□ -0.04
UPF1-207ENST00000599848 LINC00526Q96FQ7 95 aa14.78□□□□□ -0.04
UPF1-207ENST00000599848 PRR14LQ5THK1 2151 aa14.78□□□□□ -0.04
UPF1-207ENST00000599848 Q8N2B8 174 aa14.78□□□□□ -0.04
UPF1-207ENST00000599848 ALPK3Q96L96 1907 aa14.78□□□□□ -0.04
UPF1-207ENST00000599848 CDSNQ15517 529 aa14.77□□□□□ -0.04
UPF1-207ENST00000599848 NRACQ8N912 160 aa14.77□□□□□ -0.04
UPF1-207ENST00000599848 IGLV2-11P01706 119 aa14.77□□□□□ -0.05
UPF1-207ENST00000599848 SVIPQ8NHG7 77 aa14.77□□□□□ -0.05
UPF1-207ENST00000599848 SCXQ7RTU7 201 aa14.76□□□□□ -0.05
UPF1-207ENST00000599848 TRIAP1O43715 76 aa14.76□□□□□ -0.05
UPF1-207ENST00000599848 CSDC2Q9Y534 153 aaKnown RBP14.76□□□□□ -0.05
UPF1-207ENST00000599848 C20orf197Q8N268 126 aa14.76□□□□□ -0.05
UPF1-207ENST00000599848 DOPEY1Q5JWR5 2465 aa14.75□□□□□ -0.05
UPF1-207ENST00000599848 UQCRQO14949 82 aa14.75□□□□□ -0.05
UPF1-207ENST00000599848 C10orf142B7Z368 130 aa14.75□□□□□ -0.05
UPF1-207ENST00000599848 Q6ZPA2 131 aa14.75□□□□□ -0.05
UPF1-207ENST00000599848 CNFNQ9BYD5 112 aa14.75□□□□□ -0.05
UPF1-207ENST00000599848 FAM229AH3BQW9 127 aa14.75□□□□□ -0.05
UPF1-207ENST00000599848 PRRC2AP48634 2157 aaKnown RBP14.75□□□□□ -0.05
UPF1-207ENST00000599848 FHL3Q13643 280 aa14.74□□□□□ -0.05
UPF1-207ENST00000599848 PRR9Q5T870 116 aa14.74□□□□□ -0.05
UPF1-207ENST00000599848 A0A1B0GUV1 79 aa14.74□□□□□ -0.05
UPF1-207ENST00000599848 NDUFC2-KCTD14E9PQ53 114 aa14.74□□□□□ -0.05
UPF1-207ENST00000599848 FHL2Q14192 279 aa14.74□□□□□ -0.05
UPF1-207ENST00000599848 COL4A3Q01955 1670 aa14.74□□□□□ -0.05
UPF1-207ENST00000599848 MED12LQ86YW9 2145 aa14.72□□□□□ -0.05
UPF1-207ENST00000599848 CRIP3Q6Q6R5 217 aa14.72□□□□□ -0.05
UPF1-207ENST00000599848 SMIM11BQ8TCY0 68 aa14.72□□□□□ -0.05
UPF1-207ENST00000599848 UNQ6190/PRO20217Q6UXQ8 127 aa14.71□□□□□ -0.05
UPF1-207ENST00000599848 SDIM1Q6ZPB5 146 aa14.71□□□□□ -0.06
UPF1-207ENST00000599848 BRK1Q8WUW1 75 aa14.7□□□□□ -0.06
UPF1-207ENST00000599848 POM121L12Q8N7R1 296 aa14.7□□□□□ -0.06
UPF1-207ENST00000599848 RNASE8Q8TDE3 154 aaKnown RBP14.7□□□□□ -0.06
UPF1-207ENST00000599848 IMUPQ9GZP8 106 aa14.7□□□□□ -0.06
UPF1-207ENST00000599848 BEAN1Q3B7T3 259 aa14.69□□□□□ -0.06
UPF1-207ENST00000599848 LYPD5Q6UWN5 251 aa14.69□□□□□ -0.06
UPF1-207ENST00000599848 FAM240AA0A1B0GVK7 77 aa14.68□□□□□ -0.06
UPF1-207ENST00000599848 C11orf21Q9P2W6 132 aa14.68□□□□□ -0.06
UPF1-207ENST00000599848 NUP210LQ5VU65 1888 aa14.67□□□□□ -0.06
UPF1-207ENST00000599848 LINC00242Q5T6M2 205 aa14.67□□□□□ -0.06
UPF1-207ENST00000599848 ESRGQ1W209 222 aa14.66□□□□□ -0.06
UPF1-207ENST00000599848 COL5A1P20908 1838 aaPredicted RBP14.65□□□□□ -0.06
UPF1-207ENST00000599848 ABCA2Q9BZC7 2435 aa14.65□□□□□ -0.06
UPF1-207ENST00000599848 ARHGAP21Q5T5U3 1957 aa14.65□□□□□ -0.06
UPF1-207ENST00000599848 NTM-AS1Q6ZSK4 140 aa14.65□□□□□ -0.06
UPF1-207ENST00000599848 SERP2Q8N6R1 65 aa14.65□□□□□ -0.06
UPF1-207ENST00000599848 Q9BRP9 147 aa14.65□□□□□ -0.06
UPF1-207ENST00000599848 KIAA1549LQ6ZVL6 1849 aa14.64□□□□□ -0.07
UPF1-207ENST00000599848 TRBV10-3A0A0K0K1G6 114 aa14.63□□□□□ -0.07
UPF1-207ENST00000599848 COX6A2Q02221 97 aa14.63□□□□□ -0.07
UPF1-207ENST00000599848 MDFIQ99750 246 aa14.62□□□□□ -0.07
UPF1-207ENST00000599848 H3BNG1 76 aa14.6□□□□□ -0.07
UPF1-207ENST00000599848 SMIM1B2RUZ4 78 aa14.6□□□□□ -0.07
UPF1-207ENST00000599848 ZNF106Q9H2Y7 1883 aaKnown RBP14.6□□□□□ -0.07
UPF1-207ENST00000599848 WWC2-AS2Q96NR7 200 aa14.59□□□□□ -0.07
UPF1-207ENST00000599848 MAPKAPK5-AS1Q8N8E1 139 aa14.59□□□□□ -0.07
UPF1-207ENST00000599848 IGIPA6NJ69 53 aa14.59□□□□□ -0.07
UPF1-207ENST00000599848 IGHV6-1A0A0B4J1U7 121 aa14.58□□□□□ -0.08
UPF1-207ENST00000599848 A8MZ25 164 aa14.58□□□□□ -0.08
UPF1-207ENST00000599848 MRPS12O15235 138 aaKnown RBP14.56□□□□□ -0.08
UPF1-207ENST00000599848 CEP192Q8TEP8 1941 aa14.56□□□□□ -0.08
UPF1-207ENST00000599848 EDN2P20800 178 aa14.55□□□□□ -0.08
UPF1-207ENST00000599848 Q8N814 137 aa14.55□□□□□ -0.08
UPF1-207ENST00000599848 A0A1W2PPR1 153 aa14.55□□□□□ -0.08
UPF1-207ENST00000599848 IGF2RP11717 2491 aa14.54□□□□□ -0.08
UPF1-207ENST00000599848 PRM2P04554 102 aa14.54□□□□□ -0.08
UPF1-207ENST00000599848 COX8CQ7Z4L0 72 aa14.53□□□□□ -0.08
UPF1-207ENST00000599848 IGLV4-60A0A075B6I1 120 aa14.53□□□□□ -0.08
UPF1-207ENST00000599848 C9orf116Q5BN46 136 aaPredicted RBP14.52□□□□□ -0.08
UPF1-207ENST00000599848 PLA2G1BP04054 148 aaKnown RBP14.52□□□□□ -0.09
UPF1-207ENST00000599848 A6NED7 52 aa14.5□□□□□ -0.09
UPF1-207ENST00000599848 DSCAML1Q8TD84 2053 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms