RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 GAGE12HA6NDE8 117 aa6.8□□□□□ -1.32
VRK3-214ENST00000598553 TSHBP01222 138 aa6.8□□□□□ -1.32
VRK3-214ENST00000598553 LINC00614P0C842 121 aa6.8□□□□□ -1.32
VRK3-214ENST00000598553 HIGD2BQ4VC39 106 aa6.8□□□□□ -1.32
VRK3-214ENST00000598553 AMN1Q8IY45 258 aa6.8□□□□□ -1.32
VRK3-214ENST00000598553 HSPB8Q9UJY1 196 aa6.8□□□□□ -1.32
VRK3-214ENST00000598553 FAT3Q8TDW7 4589 aa6.8□□□□□ -1.32
VRK3-214ENST00000598553 TRBV6-5A0A0K0K1A5 114 aa6.79□□□□□ -1.32
VRK3-214ENST00000598553 KRTAP29-1A8MX34 341 aaPredicted RBP6.79□□□□□ -1.32
VRK3-214ENST00000598553 H7C423 109 aa6.79□□□□□ -1.32
VRK3-214ENST00000598553 J3QL48 77 aa6.79□□□□□ -1.32
VRK3-214ENST00000598553 FGF6P10767 208 aa6.79□□□□□ -1.32
VRK3-214ENST00000598553 FAM19A2Q8N3H0 131 aa6.79□□□□□ -1.32
VRK3-214ENST00000598553 UQCR10Q9UDW1 63 aa6.79□□□□□ -1.32
VRK3-214ENST00000598553 PAM16Q9Y3D7 125 aa6.79□□□□□ -1.32
VRK3-214ENST00000598553 CIRBPQ14011 172 aaKnown RBP6.78□□□□□ -1.32
VRK3-214ENST00000598553 SPATA45Q537H7 98 aa6.78□□□□□ -1.32
VRK3-214ENST00000598553 AMMECR1LQ6DCA0 310 aa6.78□□□□□ -1.32
VRK3-214ENST00000598553 PET117Q6UWS5 81 aa6.78□□□□□ -1.32
VRK3-214ENST00000598553 FA2HQ7L5A8 372 aa6.78□□□□□ -1.32
VRK3-214ENST00000598553 CHCHD10Q8WYQ3 142 aaPredicted RBP6.78□□□□□ -1.32
VRK3-214ENST00000598553 LINC00526Q96FQ7 95 aa6.78□□□□□ -1.32
VRK3-214ENST00000598553 MAP1LC3CQ9BXW4 147 aa6.78□□□□□ -1.32
VRK3-214ENST00000598553 I3L3M4 83 aa6.77□□□□□ -1.33
VRK3-214ENST00000598553 LEPROTL1O95214 131 aa6.77□□□□□ -1.33
VRK3-214ENST00000598553 POLR2KP53803 58 aaKnown RBP6.77□□□□□ -1.33
VRK3-214ENST00000598553 RPL37AP61513 92 aaKnown RBP6.77□□□□□ -1.33
VRK3-214ENST00000598553 FOXI1Q12951 378 aa6.77□□□□□ -1.33
VRK3-214ENST00000598553 FAM104BQ5XKR9 115 aa6.77□□□□□ -1.33
VRK3-214ENST00000598553 TMEM191AQ9H0A3 160 aa6.77□□□□□ -1.33
VRK3-214ENST00000598553 AP5S1Q9NUS5 200 aa6.77□□□□□ -1.33
VRK3-214ENST00000598553 IGHV3-64A0A075B6Q5 118 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.76□□□□□ -1.33
VRK3-214ENST00000598553 PPBPP02775 128 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 ZNF25P17030 456 aaPredicted RBP6.76□□□□□ -1.33
VRK3-214ENST00000598553 RNASE13Q5GAN3 156 aaKnown RBP6.76□□□□□ -1.33
VRK3-214ENST00000598553 ORMDL3Q8N138 153 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 LINC00469Q8N7U9 141 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 NRACQ8N912 160 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 PRSS3P2Q8NHM4 247 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 MRAP2Q96G30 205 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 URB1-AS1Q96HZ7 61 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 SNHG12Q9BXW3 62 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 ST20Q9HBF5 79 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 LAMTOR2Q9Y2Q5 125 aa6.76□□□□□ -1.33
VRK3-214ENST00000598553 A0A087WYN8 130 aa6.75□□□□□ -1.33
VRK3-214ENST00000598553 HSBP1L1C9JCN9 74 aa6.75□□□□□ -1.33
VRK3-214ENST00000598553 SYS1-DBNDD2H3BUS1 97 aa6.75□□□□□ -1.33
VRK3-214ENST00000598553 IGLC3P0DOY3 106 aa6.75□□□□□ -1.33
VRK3-214ENST00000598553 CFAP161Q6P656 301 aa6.75□□□□□ -1.33
VRK3-214ENST00000598553 SPACA4Q8TDM5 124 aa6.75□□□□□ -1.33
VRK3-214ENST00000598553 TRBV27A0A0K0K1C4 114 aa6.74□□□□□ -1.33
VRK3-214ENST00000598553 A0A1B0GV90 55 aa6.74□□□□□ -1.33
VRK3-214ENST00000598553 XCL1P47992 114 aa6.74□□□□□ -1.33
VRK3-214ENST00000598553 COX6A2Q02221 97 aa6.74□□□□□ -1.33
VRK3-214ENST00000598553 OR5A1Q8NGJ0 315 aa6.74□□□□□ -1.33
VRK3-214ENST00000598553 TMEM101Q96IK0 257 aa6.74□□□□□ -1.33
VRK3-214ENST00000598553 PRELID3AQ96N28 172 aa6.74□□□□□ -1.33
VRK3-214ENST00000598553 A0A096LNI7 61 aa6.73□□□□□ -1.33
VRK3-214ENST00000598553 GVQW2A0A096LPI5 108 aaPredicted RBP6.73□□□□□ -1.33
VRK3-214ENST00000598553 LINC00959A0A1B0GUT2 108 aa6.73□□□□□ -1.33
VRK3-214ENST00000598553 D6R8Y8 96 aa6.73□□□□□ -1.33
VRK3-214ENST00000598553 CCL25O15444 150 aa6.73□□□□□ -1.33
VRK3-214ENST00000598553 CKS2P33552 79 aa6.73□□□□□ -1.33
VRK3-214ENST00000598553 MRPL51Q4U2R6 128 aaKnown RBP6.73□□□□□ -1.33
VRK3-214ENST00000598553 Q6ZN92 141 aa6.73□□□□□ -1.33
VRK3-214ENST00000598553 FAM104AQ969W3 186 aa6.73□□□□□ -1.33
VRK3-214ENST00000598553 IGKV2-24A0A0C4DH68 120 aa6.72□□□□□ -1.33
VRK3-214ENST00000598553 OXTP01178 125 aa6.72□□□□□ -1.33
VRK3-214ENST00000598553 MT1HL1P0DM35 61 aa6.72□□□□□ -1.33
VRK3-214ENST00000598553 COL5A1-AS1Q5SY13 56 aa6.72□□□□□ -1.33
VRK3-214ENST00000598553 PMCHL2Q9BQD1 86 aa6.72□□□□□ -1.33
VRK3-214ENST00000598553 MAP1LC3AQ9H492 121 aa6.72□□□□□ -1.33
VRK3-214ENST00000598553 CDC42SE2Q9NRR3 84 aa6.72□□□□□ -1.33
VRK3-214ENST00000598553 TCAPO15273 167 aa6.71□□□□□ -1.34
VRK3-214ENST00000598553 PPP1R17O96001 155 aa6.71□□□□□ -1.34
VRK3-214ENST00000598553 ODF1Q14990 250 aa6.71□□□□□ -1.34
VRK3-214ENST00000598553 LINC01545Q5VT33 79 aa6.71□□□□□ -1.34
VRK3-214ENST00000598553 Q6ZUT4 128 aa6.71□□□□□ -1.34
VRK3-214ENST00000598553 NXT2Q9NPJ8 142 aaKnown RBP6.71□□□□□ -1.34
VRK3-214ENST00000598553 UBE2D4Q9Y2X8 147 aa6.71□□□□□ -1.34
VRK3-214ENST00000598553 LINC01546A6NGU7 62 aa6.7□□□□□ -1.34
VRK3-214ENST00000598553 HBDP02042 147 aa6.7□□□□□ -1.34
VRK3-214ENST00000598553 FCER1GP30273 86 aa6.7□□□□□ -1.34
VRK3-214ENST00000598553 IFI27P40305 119 aaPredicted RBP6.7□□□□□ -1.34
VRK3-214ENST00000598553 SUMO2P61956 95 aaKnown RBP6.7□□□□□ -1.34
VRK3-214ENST00000598553 PLAC8Q9NZF1 115 aa6.7□□□□□ -1.34
VRK3-214ENST00000598553 IGHV1-58A0A0C4DH39 117 aa6.69□□□□□ -1.34
VRK3-214ENST00000598553 VCYO14598 125 aa6.69□□□□□ -1.34
VRK3-214ENST00000598553 NPYP01303 97 aa6.69□□□□□ -1.34
VRK3-214ENST00000598553 RPL39P62891 51 aaKnown RBP6.69□□□□□ -1.34
VRK3-214ENST00000598553 SS18Q15532 418 aa6.69□□□□□ -1.34
VRK3-214ENST00000598553 MAJINQ3KP22 176 aa6.69□□□□□ -1.34
VRK3-214ENST00000598553 ATOH7Q8N100 152 aa6.69□□□□□ -1.34
VRK3-214ENST00000598553 DPH3Q96FX2 82 aa6.69□□□□□ -1.34
VRK3-214ENST00000598553 OPRPNQ99935 248 aaPredicted RBP6.69□□□□□ -1.34
VRK3-214ENST00000598553 LOC389332A0A1B0GUA5 103 aa6.68□□□□□ -1.34
VRK3-214ENST00000598553 PRSS47A8MTI9 375 aa6.68□□□□□ -1.34
VRK3-214ENST00000598553 SMAGPQ0VAQ4 97 aa6.68□□□□□ -1.34
VRK3-214ENST00000598553 SLC25A34Q6PIV7 304 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms