RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ALKBH7Q9BT30 221 aaPredicted RBP10.29□□□□□ -0.76
TRIM28-213ENST00000598355 IGIPA6NJ69 53 aa10.28□□□□□ -0.76
TRIM28-213ENST00000598355 SNAPINO95295 136 aa10.28□□□□□ -0.76
TRIM28-213ENST00000598355 AMELXQ99217 191 aa10.28□□□□□ -0.76
TRIM28-213ENST00000598355 NDUFA5Q16718 116 aa10.27□□□□□ -0.77
TRIM28-213ENST00000598355 LINC00526Q96FQ7 95 aa10.27□□□□□ -0.77
TRIM28-213ENST00000598355 CARD19Q96LW7 228 aa10.27□□□□□ -0.77
TRIM28-213ENST00000598355 PLA2G1BP04054 148 aaKnown RBP10.26□□□□□ -0.77
TRIM28-213ENST00000598355 CHTF8P0CG12 524 aa10.26□□□□□ -0.77
TRIM28-213ENST00000598355 INAFM2P0DMQ5 153 aa10.26□□□□□ -0.77
TRIM28-213ENST00000598355 COX6A2Q02221 97 aa10.26□□□□□ -0.77
TRIM28-213ENST00000598355 LINC00242Q5T6M2 205 aa10.26□□□□□ -0.77
TRIM28-213ENST00000598355 C5orf38Q86SI9 138 aa10.26□□□□□ -0.77
TRIM28-213ENST00000598355 MRPL18Q9H0U6 180 aaKnown RBP10.26□□□□□ -0.77
TRIM28-213ENST00000598355 MYCBP2O75592 4640 aa10.26□□□□□ -0.77
TRIM28-213ENST00000598355 TGIF2-C20orf24A0A0A6YYL0 155 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 ZNF561-AS1K7EIQ3 104 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 MALP21145 153 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 UBE2D1P51668 147 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 SYCNQ0VAF6 134 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 TEX43Q6ZNM6 134 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 FAM19A3Q7Z5A8 133 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 OR10D4PQ8NGN7 298 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 PRSS3P2Q8NHM4 247 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 TOMM6Q96B49 74 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 C2orf48Q96LS8 159 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 YPEL4Q96NS1 127 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 TIMM17AQ99595 171 aa10.25□□□□□ -0.77
TRIM28-213ENST00000598355 IGLV4-69A0A075B6H9 119 aa10.24□□□□□ -0.77
TRIM28-213ENST00000598355 APOMO95445 188 aa10.24□□□□□ -0.77
TRIM28-213ENST00000598355 G0S2P27469 103 aa10.24□□□□□ -0.77
TRIM28-213ENST00000598355 PLAC8Q9NZF1 115 aa10.24□□□□□ -0.77
TRIM28-213ENST00000598355 PKIGQ9Y2B9 76 aa10.24□□□□□ -0.77
TRIM28-213ENST00000598355 A0A087WYN8 130 aa10.23□□□□□ -0.77
TRIM28-213ENST00000598355 A0A087WZ39 114 aa10.23□□□□□ -0.77
TRIM28-213ENST00000598355 A0A096LNI7 61 aa10.23□□□□□ -0.77
TRIM28-213ENST00000598355 LINC01549A6NIU2 74 aa10.22□□□□□ -0.77
TRIM28-213ENST00000598355 SPAG11BQ08648 103 aa10.22□□□□□ -0.77
TRIM28-213ENST00000598355 FABP9Q0Z7S8 132 aa10.22□□□□□ -0.77
TRIM28-213ENST00000598355 Q6ZN92 141 aa10.22□□□□□ -0.77
TRIM28-213ENST00000598355 Q6ZRU5 148 aa10.22□□□□□ -0.77
TRIM28-213ENST00000598355 C2orf88Q9BSF0 95 aa10.22□□□□□ -0.77
TRIM28-213ENST00000598355 F8WDY8 70 aa10.21□□□□□ -0.77
TRIM28-213ENST00000598355 ZC2HC1BQ5TFG8 222 aa10.21□□□□□ -0.77
TRIM28-213ENST00000598355 ERASQ7Z444 233 aa10.21□□□□□ -0.77
TRIM28-213ENST00000598355 LINC01561Q8N1V8 128 aa10.21□□□□□ -0.77
TRIM28-213ENST00000598355 PAPPA-AS1Q5QFB9 102 aa10.2□□□□□ -0.78
TRIM28-213ENST00000598355 ORAOV1Q8WV07 137 aa10.2□□□□□ -0.78
TRIM28-213ENST00000598355 CAMK2N2Q96S95 79 aa10.2□□□□□ -0.78
TRIM28-213ENST00000598355 DMBT1Q9UGM3 2413 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-213ENST00000598355 KIAA0087Q14695 138 aa10.19□□□□□ -0.78
TRIM28-213ENST00000598355 RNF151Q2KHN1 245 aa10.19□□□□□ -0.78
TRIM28-213ENST00000598355 C18orf32Q8TCD1 76 aa10.19□□□□□ -0.78
TRIM28-213ENST00000598355 URB1-AS1Q96HZ7 61 aa10.19□□□□□ -0.78
TRIM28-213ENST00000598355 VCX2Q9H322 139 aa10.19□□□□□ -0.78
TRIM28-213ENST00000598355 LINC00474Q9P2X8 69 aa10.19□□□□□ -0.78
TRIM28-213ENST00000598355 TRAPPC1Q9Y5R8 145 aa10.19□□□□□ -0.78
TRIM28-213ENST00000598355 PKHD1L1Q86WI1 4243 aa10.18□□□□□ -0.78
TRIM28-213ENST00000598355 A0A096LNJ9 63 aa10.18□□□□□ -0.78
TRIM28-213ENST00000598355 MRPL35Q9NZE8 188 aaKnown RBP10.18□□□□□ -0.78
TRIM28-213ENST00000598355 IGKV2-24A0A0C4DH68 120 aa10.17□□□□□ -0.78
TRIM28-213ENST00000598355 LOC107984640A0A0U1RRK4 108 aa10.17□□□□□ -0.78
TRIM28-213ENST00000598355 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.17□□□□□ -0.78
TRIM28-213ENST00000598355 PTTG1IPP53801 180 aa10.17□□□□□ -0.78
TRIM28-213ENST00000598355 RPL37AP61513 92 aaKnown RBP10.17□□□□□ -0.78
TRIM28-213ENST00000598355 FA2HQ7L5A8 372 aa10.17□□□□□ -0.78
TRIM28-213ENST00000598355 MAJINQ3KP22 176 aa10.16□□□□□ -0.78
TRIM28-213ENST00000598355 SCGB3A1Q96QR1 104 aa10.16□□□□□ -0.78
TRIM28-213ENST00000598355 HERVK_113P63121 156 aa10.15□□□□□ -0.78
TRIM28-213ENST00000598355 SEC11AP67812 179 aa10.15□□□□□ -0.78
TRIM28-213ENST00000598355 STPG4Q8N801 248 aa10.15□□□□□ -0.78
TRIM28-213ENST00000598355 SMCO4Q9NRQ5 59 aa10.15□□□□□ -0.78
TRIM28-213ENST00000598355 NDUFA1O15239 70 aa10.14□□□□□ -0.79
TRIM28-213ENST00000598355 TLX1NBP0CAT3 122 aa10.14□□□□□ -0.79
TRIM28-213ENST00000598355 C10orf25Q5T742 122 aa10.14□□□□□ -0.79
TRIM28-213ENST00000598355 IGLV5-45A0A087WSX0 123 aa10.13□□□□□ -0.79
TRIM28-213ENST00000598355 CBLN2Q8IUK8 224 aa10.13□□□□□ -0.79
TRIM28-213ENST00000598355 SLC7A5P1Q8MH63 180 aa10.13□□□□□ -0.79
TRIM28-213ENST00000598355 C6orf48Q9UBA6 75 aa10.13□□□□□ -0.79
TRIM28-213ENST00000598355 HNRNPA3P51991 378 aaKnown RBP10.12□□□□□ -0.79
TRIM28-213ENST00000598355 UNQ6190/PRO20217Q6UXQ8 127 aa10.12□□□□□ -0.79
TRIM28-213ENST00000598355 CDKN2A-AS1Q9UH64 79 aa10.12□□□□□ -0.79
TRIM28-213ENST00000598355 A0A0J9YXV3 536 aa10.11□□□□□ -0.79
TRIM28-213ENST00000598355 TINCRA0A1B0GVN0 87 aa10.11□□□□□ -0.79
TRIM28-213ENST00000598355 LINC00614P0C842 121 aa10.11□□□□□ -0.79
TRIM28-213ENST00000598355 Q8IZM0 81 aa10.11□□□□□ -0.79
TRIM28-213ENST00000598355 DPH3Q96FX2 82 aa10.11□□□□□ -0.79
TRIM28-213ENST00000598355 CST9LQ9H4G1 147 aa10.11□□□□□ -0.79
TRIM28-213ENST00000598355 TRBV30A0A0K0K1B3 111 aa10.1□□□□□ -0.79
TRIM28-213ENST00000598355 PMVKQ15126 192 aa10.1□□□□□ -0.79
TRIM28-213ENST00000598355 KRTAP29-1A8MX34 341 aaPredicted RBP10.09□□□□□ -0.79
TRIM28-213ENST00000598355 HBDP02042 147 aa10.09□□□□□ -0.79
TRIM28-213ENST00000598355 GAGE2BQ13066 116 aa10.09□□□□□ -0.79
TRIM28-213ENST00000598355 PDZD11Q5EBL8 140 aa10.09□□□□□ -0.79
TRIM28-213ENST00000598355 C7orf33Q8WU49 177 aa10.09□□□□□ -0.79
TRIM28-213ENST00000598355 GEMIN7Q9H840 131 aaKnown RBP10.09□□□□□ -0.79
TRIM28-213ENST00000598355 SMIM1B2RUZ4 78 aa10.08□□□□□ -0.8
TRIM28-213ENST00000598355 RAB5BP61020 215 aa10.08□□□□□ -0.8
TRIM28-213ENST00000598355 RPL18AQ02543 176 aaKnown RBP10.08□□□□□ -0.8
TRIM28-213ENST00000598355 C2orf82Q6UX34 121 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms