RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 IMMP2LQ96T52 175 aa8.41□□□□□ -1.06
TRIM28-211ENST00000597968 TNFRSF6BO95407 300 aa8.4□□□□□ -1.06
TRIM28-211ENST00000597968 SPAG11BQ08648 103 aa8.4□□□□□ -1.06
TRIM28-211ENST00000597968 IGHV3OR16-9A0A0B4J2B5 98 aa8.39□□□□□ -1.07
TRIM28-211ENST00000597968 A0A1B0GXF2 115 aa8.39□□□□□ -1.07
TRIM28-211ENST00000597968 A0A1W2PNN7 141 aa8.39□□□□□ -1.07
TRIM28-211ENST00000597968 D6R8Y8 96 aa8.39□□□□□ -1.07
TRIM28-211ENST00000597968 TLX1NBP0CAT3 122 aa8.39□□□□□ -1.07
TRIM28-211ENST00000597968 RPL39P62891 51 aaKnown RBP8.39□□□□□ -1.07
TRIM28-211ENST00000597968 C9orf116Q5BN46 136 aaPredicted RBP8.39□□□□□ -1.07
TRIM28-211ENST00000597968 Q6ZUT4 128 aa8.39□□□□□ -1.07
TRIM28-211ENST00000597968 C5orf38Q86SI9 138 aa8.39□□□□□ -1.07
TRIM28-211ENST00000597968 OPRPNQ99935 248 aaPredicted RBP8.39□□□□□ -1.07
TRIM28-211ENST00000597968 NDUFA1O15239 70 aa8.38□□□□□ -1.07
TRIM28-211ENST00000597968 NPYP01303 97 aa8.38□□□□□ -1.07
TRIM28-211ENST00000597968 HBBP68871 147 aa8.38□□□□□ -1.07
TRIM28-211ENST00000597968 RPL18AQ02543 176 aaKnown RBP8.38□□□□□ -1.07
TRIM28-211ENST00000597968 FAM104AQ969W3 186 aa8.38□□□□□ -1.07
TRIM28-211ENST00000597968 SMIM2Q9BVW6 85 aa8.38□□□□□ -1.07
TRIM28-211ENST00000597968 MT-ND6P03923 174 aa8.37□□□□□ -1.07
TRIM28-211ENST00000597968 PSORS1C2Q9UIG4 136 aa8.37□□□□□ -1.07
TRIM28-211ENST00000597968 RNF213Q63HN8 5207 aa8.36□□□□□ -1.07
TRIM28-211ENST00000597968 ATP5L2Q7Z4Y8 100 aa8.36□□□□□ -1.07
TRIM28-211ENST00000597968 ORAOV1Q8WV07 137 aa8.36□□□□□ -1.07
TRIM28-211ENST00000597968 PYGO1Q9Y3Y4 419 aa8.36□□□□□ -1.07
TRIM28-211ENST00000597968 IFI27P40305 119 aaPredicted RBP8.35□□□□□ -1.07
TRIM28-211ENST00000597968 TGIF2-C20orf24A0A0A6YYL0 155 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 IFITM10A6NMD0 228 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 PRSS47A8MTI9 375 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 RAB5AP20339 215 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 C1orf137Q5JT78 98 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 TMEM136Q6ZRR5 245 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 ORMDL3Q8N138 153 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 LINC01561Q8N1V8 128 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 DIRC1Q969H9 104 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 LAMTOR2Q9Y2Q5 125 aa8.34□□□□□ -1.07
TRIM28-211ENST00000597968 A0A087WZ39 114 aa8.33□□□□□ -1.08
TRIM28-211ENST00000597968 TRBV30A0A0K0K1B3 111 aa8.33□□□□□ -1.08
TRIM28-211ENST00000597968 LOC389332A0A1B0GUA5 103 aa8.33□□□□□ -1.08
TRIM28-211ENST00000597968 ODF1Q14990 250 aa8.33□□□□□ -1.08
TRIM28-211ENST00000597968 PRELID3AQ96N28 172 aa8.33□□□□□ -1.08
TRIM28-211ENST00000597968 IGLV7-43P04211 117 aa8.32□□□□□ -1.08
TRIM28-211ENST00000597968 NPSP0C0P6 89 aa8.32□□□□□ -1.08
TRIM28-211ENST00000597968 PHF5AQ7RTV0 110 aaKnown RBP8.32□□□□□ -1.08
TRIM28-211ENST00000597968 K7EMI3 77 aa8.31□□□□□ -1.08
TRIM28-211ENST00000597968 RAB14P61106 215 aa8.3□□□□□ -1.08
TRIM28-211ENST00000597968 KIAA0087Q14695 138 aa8.3□□□□□ -1.08
TRIM28-211ENST00000597968 TMEM141Q96I45 108 aa8.3□□□□□ -1.08
TRIM28-211ENST00000597968 C6orf48Q9UBA6 75 aa8.3□□□□□ -1.08
TRIM28-211ENST00000597968 IGLV1-50A0A075B6I6 118 aa8.29□□□□□ -1.08
TRIM28-211ENST00000597968 NDUFC2-KCTD14E9PQ53 114 aa8.29□□□□□ -1.08
TRIM28-211ENST00000597968 H0Y9J4 135 aa8.29□□□□□ -1.08
TRIM28-211ENST00000597968 MT-ND4LP03901 98 aa8.29□□□□□ -1.08
TRIM28-211ENST00000597968 LINC00242Q5T6M2 205 aa8.29□□□□□ -1.08
TRIM28-211ENST00000597968 TEX43Q6ZNM6 134 aa8.29□□□□□ -1.08
TRIM28-211ENST00000597968 C2orf88Q9BSF0 95 aa8.29□□□□□ -1.08
TRIM28-211ENST00000597968 IGLV4-3A0A075B6K6 122 aa8.28□□□□□ -1.08
TRIM28-211ENST00000597968 PNRC1Q12796 327 aaPredicted RBP8.28□□□□□ -1.08
TRIM28-211ENST00000597968 C10orf25Q5T742 122 aa8.28□□□□□ -1.08
TRIM28-211ENST00000597968 ZC2HC1BQ5TFG8 222 aa8.28□□□□□ -1.08
TRIM28-211ENST00000597968 UNQ6190/PRO20217Q6UXQ8 127 aa8.28□□□□□ -1.08
TRIM28-211ENST00000597968 ANAPC16Q96DE5 110 aa8.28□□□□□ -1.08
TRIM28-211ENST00000597968 PACRGQ96M98 296 aaPredicted RBP8.28□□□□□ -1.08
TRIM28-211ENST00000597968 G0S2P27469 103 aa8.27□□□□□ -1.09
TRIM28-211ENST00000597968 Q6ZN92 141 aa8.27□□□□□ -1.09
TRIM28-211ENST00000597968 MAP1LC3AQ9H492 121 aa8.27□□□□□ -1.09
TRIM28-211ENST00000597968 UBE2D1P51668 147 aa8.26□□□□□ -1.09
TRIM28-211ENST00000597968 SEC11AP67812 179 aa8.26□□□□□ -1.09
TRIM28-211ENST00000597968 ORMDL2Q53FV1 153 aa8.26□□□□□ -1.09
TRIM28-211ENST00000597968 CLLU1Q5K131 121 aa8.26□□□□□ -1.09
TRIM28-211ENST00000597968 FAM19A3Q7Z5A8 133 aa8.26□□□□□ -1.09
TRIM28-211ENST00000597968 CYSLTR1Q9Y271 337 aa8.26□□□□□ -1.09
TRIM28-211ENST00000597968 M0QXV9 152 aa8.25□□□□□ -1.09
TRIM28-211ENST00000597968 ADCYAP1P18509 176 aa8.25□□□□□ -1.09
TRIM28-211ENST00000597968 RPL13AP40429 203 aaKnown RBP8.25□□□□□ -1.09
TRIM28-211ENST00000597968 GAGE2EQ4V326 116 aa8.25□□□□□ -1.09
TRIM28-211ENST00000597968 PAPPA-AS1Q5QFB9 102 aa8.25□□□□□ -1.09
TRIM28-211ENST00000597968 Q8N8P6 123 aa8.25□□□□□ -1.09
TRIM28-211ENST00000597968 AMELXQ99217 191 aa8.25□□□□□ -1.09
TRIM28-211ENST00000597968 GAGE2DQ9UEU5 116 aa8.25□□□□□ -1.09
TRIM28-211ENST00000597968 FAM168BA1KXE4 195 aa8.24□□□□□ -1.09
TRIM28-211ENST00000597968 FAM19A5Q7Z5A7 132 aaPredicted RBP8.24□□□□□ -1.09
TRIM28-211ENST00000597968 VCX2Q9H322 139 aa8.24□□□□□ -1.09
TRIM28-211ENST00000597968 CARHSP1Q9Y2V2 147 aaKnown RBP8.24□□□□□ -1.09
TRIM28-211ENST00000597968 NUPR1O60356 82 aa8.23□□□□□ -1.09
TRIM28-211ENST00000597968 PRSS2P07478 247 aa8.23□□□□□ -1.09
TRIM28-211ENST00000597968 UBE2BP63146 152 aa8.23□□□□□ -1.09
TRIM28-211ENST00000597968 IFITM2Q01629 132 aa8.23□□□□□ -1.09
TRIM28-211ENST00000597968 KIAA1644Q3SXP7 199 aa8.23□□□□□ -1.09
TRIM28-211ENST00000597968 C2orf66Q6UXQ4 117 aa8.23□□□□□ -1.09
TRIM28-211ENST00000597968 Q8IZM0 81 aa8.23□□□□□ -1.09
TRIM28-211ENST00000597968 PRR26Q8N8Z3 221 aa8.23□□□□□ -1.09
TRIM28-211ENST00000597968 CKS1BP61024 79 aa8.22□□□□□ -1.09
TRIM28-211ENST00000597968 HERVK_113P63121 156 aa8.22□□□□□ -1.09
TRIM28-211ENST00000597968 LINC00173Q6ZV60 143 aa8.22□□□□□ -1.09
TRIM28-211ENST00000597968 KRTAP7-1Q8IUC3 87 aa8.22□□□□□ -1.09
TRIM28-211ENST00000597968 CTDSP1Q9GZU7 261 aa8.22□□□□□ -1.09
TRIM28-211ENST00000597968 NXT2Q9NPJ8 142 aaKnown RBP8.22□□□□□ -1.09
TRIM28-211ENST00000597968 TMEM218A2RU14 115 aa8.21□□□□□ -1.1
TRIM28-211ENST00000597968 LINC01549A6NIU2 74 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms