RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 C1orf137Q5JT78 98 aa14.63□□□□□ -0.07
LSM4-202ENST00000593564 hCG_2014768A0A024R1R8 64 aa14.62□□□□□ -0.07
LSM4-202ENST00000593564 IGHV3OR16-9A0A0B4J2B5 98 aa14.62□□□□□ -0.07
LSM4-202ENST00000593564 ADIRFQ15847 76 aa14.62□□□□□ -0.07
LSM4-202ENST00000593564 ORAOV1Q8WV07 137 aa14.62□□□□□ -0.07
LSM4-202ENST00000593564 SPANXA1Q9NS26 97 aa14.62□□□□□ -0.07
LSM4-202ENST00000593564 TNFRSF6BO95407 300 aa14.61□□□□□ -0.07
LSM4-202ENST00000593564 SMIM2Q9BVW6 85 aa14.61□□□□□ -0.07
LSM4-202ENST00000593564 MRPS36P82909 103 aaKnown RBP14.6□□□□□ -0.07
LSM4-202ENST00000593564 IMMP2LQ96T52 175 aa14.6□□□□□ -0.07
LSM4-202ENST00000593564 NAT8Q9UHE5 227 aa14.6□□□□□ -0.07
LSM4-202ENST00000593564 NDUFA1O15239 70 aa14.59□□□□□ -0.07
LSM4-202ENST00000593564 TLX1NBP0CAT3 122 aa14.58□□□□□ -0.08
LSM4-202ENST00000593564 C9JQL5 133 aa14.57□□□□□ -0.08
LSM4-202ENST00000593564 D6R8Y8 96 aa14.57□□□□□ -0.08
LSM4-202ENST00000593564 HBBP68871 147 aa14.57□□□□□ -0.08
LSM4-202ENST00000593564 IFITM10A6NMD0 228 aa14.56□□□□□ -0.08
LSM4-202ENST00000593564 IGLV7-43P04211 117 aa14.56□□□□□ -0.08
LSM4-202ENST00000593564 S100A8P05109 93 aa14.56□□□□□ -0.08
LSM4-202ENST00000593564 C10orf25Q5T742 122 aa14.56□□□□□ -0.08
LSM4-202ENST00000593564 DIRC1Q969H9 104 aa14.56□□□□□ -0.08
LSM4-202ENST00000593564 LPAP08519 4548 aa14.55□□□□□ -0.08
LSM4-202ENST00000593564 F8W036 122 aa14.55□□□□□ -0.08
LSM4-202ENST00000593564 NPYP01303 97 aa14.55□□□□□ -0.08
LSM4-202ENST00000593564 FAM168BA1KXE4 195 aa14.54□□□□□ -0.08
LSM4-202ENST00000593564 MRPL54Q6P161 138 aaKnown RBP14.54□□□□□ -0.08
LSM4-202ENST00000593564 UNQ6190/PRO20217Q6UXQ8 127 aa14.54□□□□□ -0.08
LSM4-202ENST00000593564 C6orf48Q9UBA6 75 aa14.54□□□□□ -0.08
LSM4-202ENST00000593564 A0A087WZ39 114 aa14.53□□□□□ -0.08
LSM4-202ENST00000593564 A0A1B0GXF2 115 aa14.53□□□□□ -0.08
LSM4-202ENST00000593564 PPBPP02775 128 aa14.53□□□□□ -0.08
LSM4-202ENST00000593564 SMDT1Q9H4I9 107 aa14.52□□□□□ -0.09
LSM4-202ENST00000593564 TGIF2-C20orf24A0A0A6YYL0 155 aa14.51□□□□□ -0.09
LSM4-202ENST00000593564 KRTAP11-1Q8IUC1 163 aa14.51□□□□□ -0.09
LSM4-202ENST00000593564 PRR26Q8N8Z3 221 aa14.51□□□□□ -0.09
LSM4-202ENST00000593564 H0Y9J4 135 aa14.5□□□□□ -0.09
LSM4-202ENST00000593564 SRSF3P84103 164 aaKnown RBP14.5□□□□□ -0.09
LSM4-202ENST00000593564 KIAA0087Q14695 138 aa14.5□□□□□ -0.09
LSM4-202ENST00000593564 PEA15Q15121 130 aa14.5□□□□□ -0.09
LSM4-202ENST00000593564 FAM19A5Q7Z5A7 132 aaPredicted RBP14.5□□□□□ -0.09
LSM4-202ENST00000593564 IFI27P40305 119 aaPredicted RBP14.49□□□□□ -0.09
LSM4-202ENST00000593564 GAGE2EQ4V326 116 aa14.49□□□□□ -0.09
LSM4-202ENST00000593564 GAGE2DQ9UEU5 116 aa14.49□□□□□ -0.09
LSM4-202ENST00000593564 PYGO1Q9Y3Y4 419 aa14.49□□□□□ -0.09
LSM4-202ENST00000593564 ORMDL3Q8N138 153 aa14.48□□□□□ -0.09
LSM4-202ENST00000593564 RAB5AP20339 215 aa14.47□□□□□ -0.09
LSM4-202ENST00000593564 LINC00242Q5T6M2 205 aa14.47□□□□□ -0.09
LSM4-202ENST00000593564 KRTAP7-1Q8IUC3 87 aa14.47□□□□□ -0.09
LSM4-202ENST00000593564 IGLV4-3A0A075B6K6 122 aa14.46□□□□□ -0.09
LSM4-202ENST00000593564 TRBV30A0A0K0K1B3 111 aa14.45□□□□□ -0.1
LSM4-202ENST00000593564 TMEM136Q6ZRR5 245 aa14.45□□□□□ -0.1
LSM4-202ENST00000593564 ATP5L2Q7Z4Y8 100 aa14.45□□□□□ -0.1
LSM4-202ENST00000593564 M0QXV9 152 aa14.44□□□□□ -0.1
LSM4-202ENST00000593564 PRELID3AQ96N28 172 aa14.44□□□□□ -0.1
LSM4-202ENST00000593564 IGLV1-50A0A075B6I6 118 aa14.43□□□□□ -0.1
LSM4-202ENST00000593564 TMEM141Q96I45 108 aa14.43□□□□□ -0.1
LSM4-202ENST00000593564 NDUFC2-KCTD14E9PQ53 114 aa14.42□□□□□ -0.1
LSM4-202ENST00000593564 KRTAP1-4P0C5Y4 121 aa14.42□□□□□ -0.1
LSM4-202ENST00000593564 C2orf82Q6UX34 121 aa14.42□□□□□ -0.1
LSM4-202ENST00000593564 LINC01561Q8N1V8 128 aa14.42□□□□□ -0.1
LSM4-202ENST00000593564 PRSS47A8MTI9 375 aa14.41□□□□□ -0.1
LSM4-202ENST00000593564 UBE2BP63146 152 aa14.41□□□□□ -0.1
LSM4-202ENST00000593564 PACRGQ96M98 296 aaPredicted RBP14.41□□□□□ -0.1
LSM4-202ENST00000593564 UBE2D1P51668 147 aa14.4□□□□□ -0.1
LSM4-202ENST00000593564 TEX43Q6ZNM6 134 aa14.4□□□□□ -0.1
LSM4-202ENST00000593564 C9orf129Q5T035 196 aaKnown RBP14.39□□□□□ -0.11
LSM4-202ENST00000593564 LAMTOR2Q9Y2Q5 125 aa14.39□□□□□ -0.11
LSM4-202ENST00000593564 C2orf88Q9BSF0 95 aa14.38□□□□□ -0.11
LSM4-202ENST00000593564 MAP1LC3AQ9H492 121 aa14.37□□□□□ -0.11
LSM4-202ENST00000593564 LOC389332A0A1B0GUA5 103 aa14.35□□□□□ -0.11
LSM4-202ENST00000593564 Q6ZN92 141 aa14.35□□□□□ -0.11
LSM4-202ENST00000593564 LINC00173Q6ZV60 143 aa14.35□□□□□ -0.11
LSM4-202ENST00000593564 AMELXQ99217 191 aa14.35□□□□□ -0.11
LSM4-202ENST00000593564 CYSLTR1Q9Y271 337 aa14.35□□□□□ -0.11
LSM4-202ENST00000593564 RPL13AP40429 203 aaKnown RBP14.34□□□□□ -0.11
LSM4-202ENST00000593564 C2orf66Q6UXQ4 117 aa14.34□□□□□ -0.11
LSM4-202ENST00000593564 Q8N8P6 123 aa14.34□□□□□ -0.11
LSM4-202ENST00000593564 A0A1B0GVG6 124 aa14.33□□□□□ -0.12
LSM4-202ENST00000593564 PRSS2P07478 247 aa14.33□□□□□ -0.12
LSM4-202ENST00000593564 ZC2HC1BQ5TFG8 222 aa14.33□□□□□ -0.12
LSM4-202ENST00000593564 VCX2Q9H322 139 aa14.33□□□□□ -0.12
LSM4-202ENST00000593564 NPSP0C0P6 89 aa14.32□□□□□ -0.12
LSM4-202ENST00000593564 CKS1BP61024 79 aa14.31□□□□□ -0.12
LSM4-202ENST00000593564 ORMDL2Q53FV1 153 aa14.3□□□□□ -0.12
LSM4-202ENST00000593564 FAM19A3Q7Z5A8 133 aa14.3□□□□□ -0.12
LSM4-202ENST00000593564 Q8IZM0 81 aa14.3□□□□□ -0.12
LSM4-202ENST00000593564 TOMM7Q9P0U1 55 aa14.3□□□□□ -0.12
LSM4-202ENST00000593564 CARHSP1Q9Y2V2 147 aaKnown RBP14.3□□□□□ -0.12
LSM4-202ENST00000593564 IGIPA6NJ69 53 aa14.29□□□□□ -0.12
LSM4-202ENST00000593564 ZNF861PO60384 105 aa14.29□□□□□ -0.12
LSM4-202ENST00000593564 K7EMI3 77 aa14.28□□□□□ -0.12
LSM4-202ENST00000593564 C6orf226Q5I0X4 101 aa14.28□□□□□ -0.12
LSM4-202ENST00000593564 MUC2Q02817 5179 aa14.28□□□□□ -0.12
LSM4-202ENST00000593564 NUPR1O60356 82 aa14.27□□□□□ -0.13
LSM4-202ENST00000593564 LINC00469Q8N7U9 141 aa14.27□□□□□ -0.13
LSM4-202ENST00000593564 C22orf24Q9Y442 160 aa14.27□□□□□ -0.13
LSM4-202ENST00000593564 PNRC1Q12796 327 aaPredicted RBP14.26□□□□□ -0.13
LSM4-202ENST00000593564 ALKBH7Q9BT30 221 aaPredicted RBP14.26□□□□□ -0.13
LSM4-202ENST00000593564 HERVK_113P63121 156 aa14.25□□□□□ -0.13
LSM4-202ENST00000593564 PRR4Q16378 134 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms