RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 TRAV13-1A0A0B4J241 112 aa6.77□□□□□ -1.33
VPS4B-202ENST00000588059 LOC389332A0A1B0GUA5 103 aa6.77□□□□□ -1.33
VPS4B-202ENST00000588059 RAB5AP20339 215 aa6.77□□□□□ -1.33
VPS4B-202ENST00000588059 RPL39P62891 51 aaKnown RBP6.77□□□□□ -1.33
VPS4B-202ENST00000588059 Q6ZUT4 128 aa6.77□□□□□ -1.33
VPS4B-202ENST00000588059 CSDC2Q9Y534 153 aaKnown RBP6.77□□□□□ -1.33
VPS4B-202ENST00000588059 C1orf196B1AJZ1 125 aa6.76□□□□□ -1.33
VPS4B-202ENST00000588059 MALP21145 153 aa6.76□□□□□ -1.33
VPS4B-202ENST00000588059 CD164L2Q6UWJ8 174 aa6.76□□□□□ -1.33
VPS4B-202ENST00000588059 TIMM21Q9BVV7 248 aa6.76□□□□□ -1.33
VPS4B-202ENST00000588059 MAP1LC3AQ9H492 121 aa6.76□□□□□ -1.33
VPS4B-202ENST00000588059 IGHV1-58A0A0C4DH39 117 aa6.75□□□□□ -1.33
VPS4B-202ENST00000588059 A0A0U1RQV1 116 aa6.75□□□□□ -1.33
VPS4B-202ENST00000588059 IMMP2LQ96T52 175 aa6.75□□□□□ -1.33
VPS4B-202ENST00000588059 SEC11CQ9BY50 192 aa6.75□□□□□ -1.33
VPS4B-202ENST00000588059 CTDSP1Q9GZU7 261 aa6.75□□□□□ -1.33
VPS4B-202ENST00000588059 PKIGQ9Y2B9 76 aa6.75□□□□□ -1.33
VPS4B-202ENST00000588059 COX7A2LO14548 114 aa6.74□□□□□ -1.33
VPS4B-202ENST00000588059 LINC00526Q96FQ7 95 aa6.74□□□□□ -1.33
VPS4B-202ENST00000588059 CARD19Q96LW7 228 aa6.74□□□□□ -1.33
VPS4B-202ENST00000588059 OPRPNQ99935 248 aaPredicted RBP6.74□□□□□ -1.33
VPS4B-202ENST00000588059 SPANXA1Q9NS26 97 aa6.74□□□□□ -1.33
VPS4B-202ENST00000588059 PSORS1C2Q9UIG4 136 aa6.74□□□□□ -1.33
VPS4B-202ENST00000588059 LAMTOR2Q9Y2Q5 125 aa6.74□□□□□ -1.33
VPS4B-202ENST00000588059 ZNF561-AS1K7EIQ3 104 aa6.73□□□□□ -1.33
VPS4B-202ENST00000588059 S100PP25815 95 aa6.73□□□□□ -1.33
VPS4B-202ENST00000588059 IFI27P40305 119 aaPredicted RBP6.73□□□□□ -1.33
VPS4B-202ENST00000588059 LCE2AQ5TA79 106 aaPredicted RBP6.73□□□□□ -1.33
VPS4B-202ENST00000588059 C5orf38Q86SI9 138 aa6.73□□□□□ -1.33
VPS4B-202ENST00000588059 PRR26Q8N8Z3 221 aa6.73□□□□□ -1.33
VPS4B-202ENST00000588059 IFITM10A6NMD0 228 aa6.72□□□□□ -1.33
VPS4B-202ENST00000588059 PRSS47A8MTI9 375 aa6.72□□□□□ -1.33
VPS4B-202ENST00000588059 PTTG1IPP53801 180 aa6.72□□□□□ -1.33
VPS4B-202ENST00000588059 KIAA1644Q3SXP7 199 aa6.72□□□□□ -1.33
VPS4B-202ENST00000588059 Q8N8P6 123 aa6.72□□□□□ -1.33
VPS4B-202ENST00000588059 TRAV9-1A0A075B6T8 112 aa6.71□□□□□ -1.34
VPS4B-202ENST00000588059 MRPS36P82909 103 aaKnown RBP6.71□□□□□ -1.34
VPS4B-202ENST00000588059 LCE2DQ5TA82 110 aaPredicted RBP6.71□□□□□ -1.34
VPS4B-202ENST00000588059 IGLV4-69A0A075B6H9 119 aa6.7□□□□□ -1.34
VPS4B-202ENST00000588059 A0A1W2PNN7 141 aa6.7□□□□□ -1.34
VPS4B-202ENST00000588059 APOMO95445 188 aa6.7□□□□□ -1.34
VPS4B-202ENST00000588059 MT-ND6P03923 174 aa6.7□□□□□ -1.34
VPS4B-202ENST00000588059 SYCNQ0VAF6 134 aa6.7□□□□□ -1.34
VPS4B-202ENST00000588059 FAM104AQ969W3 186 aa6.7□□□□□ -1.34
VPS4B-202ENST00000588059 RPS10P5Q9NQ39 176 aa6.7□□□□□ -1.34
VPS4B-202ENST00000588059 CYSLTR1Q9Y271 337 aa6.7□□□□□ -1.34
VPS4B-202ENST00000588059 IGLV4-3A0A075B6K6 122 aa6.69□□□□□ -1.34
VPS4B-202ENST00000588059 GAGE2BQ13066 116 aa6.69□□□□□ -1.34
VPS4B-202ENST00000588059 ORMDL2Q53FV1 153 aa6.69□□□□□ -1.34
VPS4B-202ENST00000588059 C10orf91Q5T1B1 145 aa6.69□□□□□ -1.34
VPS4B-202ENST00000588059 C2orf66Q6UXQ4 117 aa6.69□□□□□ -1.34
VPS4B-202ENST00000588059 TMEM141Q96I45 108 aa6.69□□□□□ -1.34
VPS4B-202ENST00000588059 CAMK2N2Q96S95 79 aa6.69□□□□□ -1.34
VPS4B-202ENST00000588059 NXT2Q9NPJ8 142 aaKnown RBP6.69□□□□□ -1.34
VPS4B-202ENST00000588059 PYGO1Q9Y3Y4 419 aa6.69□□□□□ -1.34
VPS4B-202ENST00000588059 LOC107984640A0A0U1RRK4 108 aa6.68□□□□□ -1.34
VPS4B-202ENST00000588059 SPAG11BQ08648 103 aa6.68□□□□□ -1.34
VPS4B-202ENST00000588059 RHEBQ15382 184 aa6.68□□□□□ -1.34
VPS4B-202ENST00000588059 PRR4Q16378 134 aa6.68□□□□□ -1.34
VPS4B-202ENST00000588059 C1orf137Q5JT78 98 aa6.68□□□□□ -1.34
VPS4B-202ENST00000588059 Q6ZN92 141 aa6.68□□□□□ -1.34
VPS4B-202ENST00000588059 TEX43Q6ZNM6 134 aa6.68□□□□□ -1.34
VPS4B-202ENST00000588059 DIRC1Q969H9 104 aa6.68□□□□□ -1.34
VPS4B-202ENST00000588059 GNB1LQ9BYB4 327 aa6.68□□□□□ -1.34
VPS4B-202ENST00000588059 CARHSP1Q9Y2V2 147 aaKnown RBP6.68□□□□□ -1.34
VPS4B-202ENST00000588059 TGIF2-C20orf24A0A0A6YYL0 155 aa6.67□□□□□ -1.34
VPS4B-202ENST00000588059 K7EMI3 77 aa6.67□□□□□ -1.34
VPS4B-202ENST00000588059 C9orf116Q5BN46 136 aaPredicted RBP6.67□□□□□ -1.34
VPS4B-202ENST00000588059 ORAOV1Q8WV07 137 aa6.67□□□□□ -1.34
VPS4B-202ENST00000588059 C2orf88Q9BSF0 95 aa6.67□□□□□ -1.34
VPS4B-202ENST00000588059 IGHV3OR16-9A0A0B4J2B5 98 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 H0Y9J4 135 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 APOC3P02656 99 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 IGLV7-43P04211 117 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 G0S2P27469 103 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 FABP9Q0Z7S8 132 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 COX19Q49B96 90 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 ZC2HC1BQ5TFG8 222 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 PHF5AQ7RTV0 110 aaKnown RBP6.66□□□□□ -1.34
VPS4B-202ENST00000588059 OR10D4PQ8NGN7 298 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 C2orf48Q96LS8 159 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 MRPL18Q9H0U6 180 aaKnown RBP6.66□□□□□ -1.34
VPS4B-202ENST00000588059 VCX2Q9H322 139 aa6.66□□□□□ -1.34
VPS4B-202ENST00000588059 IGLV1-50A0A075B6I6 118 aa6.65□□□□□ -1.34
VPS4B-202ENST00000588059 KRTAP1-4P0C5Y4 121 aa6.65□□□□□ -1.34
VPS4B-202ENST00000588059 NDUFA5Q16718 116 aa6.65□□□□□ -1.34
VPS4B-202ENST00000588059 LINC00242Q5T6M2 205 aa6.65□□□□□ -1.34
VPS4B-202ENST00000588059 IGIPA6NJ69 53 aa6.64□□□□□ -1.35
VPS4B-202ENST00000588059 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.64□□□□□ -1.35
VPS4B-202ENST00000588059 UBE2D1P51668 147 aa6.64□□□□□ -1.35
VPS4B-202ENST00000588059 RPL18AQ02543 176 aaKnown RBP6.64□□□□□ -1.35
VPS4B-202ENST00000588059 ALKBH7Q9BT30 221 aaPredicted RBP6.64□□□□□ -1.35
VPS4B-202ENST00000588059 A0A087WZ39 114 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 SNAPINO95295 136 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 PAPPA-AS1Q5QFB9 102 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 LINC00173Q6ZV60 143 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 FA2HQ7L5A8 372 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 KRTAP11-1Q8IUC1 163 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 SVBPQ8N300 66 aa6.63□□□□□ -1.35
VPS4B-202ENST00000588059 TOMM6Q96B49 74 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms