RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 HIST3H2BBQ8N257 126 aa7.95□□□□□ -1.14
SS18-225ENST00000585121 PRELID3AQ96N28 172 aa7.95□□□□□ -1.14
SS18-225ENST00000585121 PRSS47A8MTI9 375 aa7.94□□□□□ -1.14
SS18-225ENST00000585121 J3QL48 77 aa7.94□□□□□ -1.14
SS18-225ENST00000585121 SLPIP03973 132 aa7.94□□□□□ -1.14
SS18-225ENST00000585121 S100A2P29034 98 aa7.94□□□□□ -1.14
SS18-225ENST00000585121 PACRGQ96M98 296 aaPredicted RBP7.94□□□□□ -1.14
SS18-225ENST00000585121 KRTAP3-3Q9BYR6 98 aa7.94□□□□□ -1.14
SS18-225ENST00000585121 KRTAP3-2Q9BYR7 98 aa7.94□□□□□ -1.14
SS18-225ENST00000585121 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.94□□□□□ -1.14
SS18-225ENST00000585121 GVQW2A0A096LPI5 108 aaPredicted RBP7.93□□□□□ -1.14
SS18-225ENST00000585121 IGHV1-58A0A0C4DH39 117 aa7.93□□□□□ -1.14
SS18-225ENST00000585121 TNFRSF6BO95407 300 aa7.93□□□□□ -1.14
SS18-225ENST00000585121 LINC00614P0C842 121 aa7.93□□□□□ -1.14
SS18-225ENST00000585121 RPL37AP61513 92 aaKnown RBP7.93□□□□□ -1.14
SS18-225ENST00000585121 RPL32P62910 135 aaKnown RBP7.93□□□□□ -1.14
SS18-225ENST00000585121 CD164L2Q6UWJ8 174 aa7.93□□□□□ -1.14
SS18-225ENST00000585121 CHCHD1Q96BP2 118 aaKnown RBP7.93□□□□□ -1.14
SS18-225ENST00000585121 CSDC2Q9Y534 153 aaKnown RBP7.93□□□□□ -1.14
SS18-225ENST00000585121 SERF1AO75920 110 aa7.93□□□□□ -1.14
SS18-225ENST00000585121 PKIGQ9Y2B9 76 aa7.93□□□□□ -1.14
SS18-225ENST00000585121 UBE2D4Q9Y2X8 147 aa7.93□□□□□ -1.14
SS18-225ENST00000585121 ZNF561-AS1K7EIQ3 104 aa7.92□□□□□ -1.14
SS18-225ENST00000585121 NUPR1O60356 82 aa7.92□□□□□ -1.14
SS18-225ENST00000585121 MALP21145 153 aa7.92□□□□□ -1.14
SS18-225ENST00000585121 LINC00310P59036 64 aa7.92□□□□□ -1.14
SS18-225ENST00000585121 CIRBPQ14011 172 aaKnown RBP7.92□□□□□ -1.14
SS18-225ENST00000585121 PRSS3P2Q8NHM4 247 aa7.92□□□□□ -1.14
SS18-225ENST00000585121 TIMM21Q9BVV7 248 aa7.92□□□□□ -1.14
SS18-225ENST00000585121 SMIM2Q9BVW6 85 aa7.92□□□□□ -1.14
SS18-225ENST00000585121 MAP1LC3AQ9H492 121 aa7.92□□□□□ -1.14
SS18-225ENST00000585121 PANO1I0J062 215 aa7.91□□□□□ -1.14
SS18-225ENST00000585121 HSBP1O75506 76 aa7.91□□□□□ -1.14
SS18-225ENST00000585121 NPYP01303 97 aa7.91□□□□□ -1.14
SS18-225ENST00000585121 COX6A2Q02221 97 aa7.91□□□□□ -1.14
SS18-225ENST00000585121 HIST1H2BLQ99880 126 aa7.91□□□□□ -1.14
SS18-225ENST00000585121 TRAV13-1A0A0B4J241 112 aa7.9□□□□□ -1.14
SS18-225ENST00000585121 IFITM10A6NMD0 228 aa7.9□□□□□ -1.14
SS18-225ENST00000585121 COX7A2LO14548 114 aa7.9□□□□□ -1.14
SS18-225ENST00000585121 PDZD11Q5EBL8 140 aa7.9□□□□□ -1.14
SS18-225ENST00000585121 NXT2Q9NPJ8 142 aaKnown RBP7.9□□□□□ -1.14
SS18-225ENST00000585121 A0A087WYN8 130 aa7.89□□□□□ -1.15
SS18-225ENST00000585121 LINC01546A6NGU7 62 aa7.89□□□□□ -1.15
SS18-225ENST00000585121 FABP4P15090 132 aa7.89□□□□□ -1.15
SS18-225ENST00000585121 RNASE13Q5GAN3 156 aaKnown RBP7.89□□□□□ -1.15
SS18-225ENST00000585121 SPACA4Q8TDM5 124 aa7.89□□□□□ -1.15
SS18-225ENST00000585121 URB1-AS1Q96HZ7 61 aa7.89□□□□□ -1.15
SS18-225ENST00000585121 KRTAP29-1A8MX34 341 aaPredicted RBP7.88□□□□□ -1.15
SS18-225ENST00000585121 K7EMI3 77 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 CHTF8P0CG12 524 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 IFI27P40305 119 aaPredicted RBP7.88□□□□□ -1.15
SS18-225ENST00000585121 KRTAP10-4P60372 401 aaPredicted RBP7.88□□□□□ -1.15
SS18-225ENST00000585121 MAJINQ3KP22 176 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 Q6ZUT4 128 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 FA2HQ7L5A8 372 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 CARD19Q96LW7 228 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 SPANXA1Q9NS26 97 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 LINC00474Q9P2X8 69 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 IGKV2-24A0A0C4DH68 120 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 LOC389332A0A1B0GUA5 103 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 APOMO95445 188 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 AKR1D1P51857 326 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 RPL39P62891 51 aaKnown RBP7.88□□□□□ -1.15
SS18-225ENST00000585121 Q8N8P6 123 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 C7orf33Q8WU49 177 aa7.88□□□□□ -1.15
SS18-225ENST00000585121 SYCNQ0VAF6 134 aa7.87□□□□□ -1.15
SS18-225ENST00000585121 OR10D4PQ8NGN7 298 aa7.87□□□□□ -1.15
SS18-225ENST00000585121 LINC00526Q96FQ7 95 aa7.87□□□□□ -1.15
SS18-225ENST00000585121 PLAC8Q9NZF1 115 aa7.87□□□□□ -1.15
SS18-225ENST00000585121 OXTP01178 125 aa7.86□□□□□ -1.15
SS18-225ENST00000585121 MRPS36P82909 103 aaKnown RBP7.86□□□□□ -1.15
SS18-225ENST00000585121 C5orf38Q86SI9 138 aa7.85□□□□□ -1.15
SS18-225ENST00000585121 FAM19A2Q8N3H0 131 aa7.85□□□□□ -1.15
SS18-225ENST00000585121 STPG4Q8N801 248 aa7.85□□□□□ -1.15
SS18-225ENST00000585121 PKHD1L1Q86WI1 4243 aa7.85□□□□□ -1.15
SS18-225ENST00000585121 IGLV4-69A0A075B6H9 119 aa7.84□□□□□ -1.15
SS18-225ENST00000585121 CAMK2N2Q96S95 79 aa7.84□□□□□ -1.15
SS18-225ENST00000585121 A0A096LNI7 61 aa7.83□□□□□ -1.16
SS18-225ENST00000585121 LEPROTL1O95214 131 aa7.83□□□□□ -1.16
SS18-225ENST00000585121 G0S2P27469 103 aa7.83□□□□□ -1.16
SS18-225ENST00000585121 ORMDL2Q53FV1 153 aa7.83□□□□□ -1.16
SS18-225ENST00000585121 C2orf48Q96LS8 159 aa7.83□□□□□ -1.16
SS18-225ENST00000585121 FAT3Q8TDW7 4589 aa7.83□□□□□ -1.16
SS18-225ENST00000585121 LOC107984640A0A0U1RRK4 108 aa7.83□□□□□ -1.16
SS18-225ENST00000585121 OPRPNQ99935 248 aaPredicted RBP7.83□□□□□ -1.16
SS18-225ENST00000585121 HSPB8Q9UJY1 196 aa7.83□□□□□ -1.16
SS18-225ENST00000585121 PYGO1Q9Y3Y4 419 aa7.83□□□□□ -1.16
SS18-225ENST00000585121 LRP1Q07954 4544 aaKnown RBP7.82□□□□□ -1.16
SS18-225ENST00000585121 LINC01549A6NIU2 74 aa7.82□□□□□ -1.16
SS18-225ENST00000585121 HBDP02042 147 aa7.82□□□□□ -1.16
SS18-225ENST00000585121 SMIM6P0DI80 62 aa7.82□□□□□ -1.16
SS18-225ENST00000585121 SPAG11BQ08648 103 aa7.82□□□□□ -1.16
SS18-225ENST00000585121 JOSD1Q15040 202 aaPredicted RBP7.82□□□□□ -1.16
SS18-225ENST00000585121 Q6ZRU5 148 aa7.82□□□□□ -1.16
SS18-225ENST00000585121 GAGE2BQ13066 116 aa7.81□□□□□ -1.16
SS18-225ENST00000585121 PMCHL1Q16048 86 aa7.81□□□□□ -1.16
SS18-225ENST00000585121 ORAOV1Q8WV07 137 aa7.81□□□□□ -1.16
SS18-225ENST00000585121 TMEM141Q96I45 108 aa7.81□□□□□ -1.16
SS18-225ENST00000585121 CYSLTR1Q9Y271 337 aa7.81□□□□□ -1.16
SS18-225ENST00000585121 A0A096LNJ9 63 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms