RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 TCAPO15273 167 aa11.47□□□□□ -0.57
TOP3A-220ENST00000585031 KRTAP9-6A0A140TA67 174 aa11.46□□□□□ -0.57
TOP3A-220ENST00000585031 LINC01549A6NIU2 74 aa11.46□□□□□ -0.57
TOP3A-220ENST00000585031 CIRBPQ14011 172 aaKnown RBP11.46□□□□□ -0.57
TOP3A-220ENST00000585031 PET117Q6UWS5 81 aa11.46□□□□□ -0.57
TOP3A-220ENST00000585031 C1orf43Q9BWL3 253 aa11.46□□□□□ -0.57
TOP3A-220ENST00000585031 MUC2Q02817 5179 aa11.46□□□□□ -0.58
TOP3A-220ENST00000585031 A0A087WX48 190 aa11.45□□□□□ -0.58
TOP3A-220ENST00000585031 DGAT2L7PQ6IED9 249 aa11.45□□□□□ -0.58
TOP3A-220ENST00000585031 KIR2DL4Q99706 377 aa11.45□□□□□ -0.58
TOP3A-220ENST00000585031 A0A096LNJ9 63 aa11.44□□□□□ -0.58
TOP3A-220ENST00000585031 SDHAF1A6NFY7 115 aa11.44□□□□□ -0.58
TOP3A-220ENST00000585031 SYS1-DBNDD2H3BUS1 97 aa11.44□□□□□ -0.58
TOP3A-220ENST00000585031 ATP5LO75964 103 aa11.44□□□□□ -0.58
TOP3A-220ENST00000585031 POLR2KP53803 58 aaKnown RBP11.44□□□□□ -0.58
TOP3A-220ENST00000585031 KRTAP26-1Q6PEX3 210 aa11.44□□□□□ -0.58
TOP3A-220ENST00000585031 KRTAP10-8P60410 259 aa11.43□□□□□ -0.58
TOP3A-220ENST00000585031 TEX43Q6ZNM6 134 aa11.43□□□□□ -0.58
TOP3A-220ENST00000585031 IFI27L1Q96BM0 104 aa11.43□□□□□ -0.58
TOP3A-220ENST00000585031 CHCHD7Q9BUK0 85 aa11.43□□□□□ -0.58
TOP3A-220ENST00000585031 TRBV27A0A0K0K1C4 114 aa11.42□□□□□ -0.58
TOP3A-220ENST00000585031 CHTF8P0CG12 524 aa11.42□□□□□ -0.58
TOP3A-220ENST00000585031 LINC00173Q6ZV60 143 aa11.42□□□□□ -0.58
TOP3A-220ENST00000585031 A0A087WYN8 130 aa11.41□□□□□ -0.58
TOP3A-220ENST00000585031 VAMP8Q9BV40 100 aa11.41□□□□□ -0.58
TOP3A-220ENST00000585031 TSTD3H0UI37 97 aa11.4□□□□□ -0.58
TOP3A-220ENST00000585031 I3L3M4 83 aa11.4□□□□□ -0.58
TOP3A-220ENST00000585031 PKIAP61925 76 aa11.4□□□□□ -0.58
TOP3A-220ENST00000585031 MPV17L2Q567V2 206 aa11.4□□□□□ -0.58
TOP3A-220ENST00000585031 PCP4L1A6NKN8 68 aa11.39□□□□□ -0.59
TOP3A-220ENST00000585031 SLPIP03973 132 aa11.39□□□□□ -0.59
TOP3A-220ENST00000585031 CYSLTR1Q9Y271 337 aa11.39□□□□□ -0.59
TOP3A-220ENST00000585031 TRBV10-1A0A0K0K1A3 114 aa11.38□□□□□ -0.59
TOP3A-220ENST00000585031 TMEM262E9PQX1 116 aa11.38□□□□□ -0.59
TOP3A-220ENST00000585031 H0Y8G0 127 aa11.38□□□□□ -0.59
TOP3A-220ENST00000585031 LINC01545Q5VT33 79 aa11.38□□□□□ -0.59
TOP3A-220ENST00000585031 TOMM6Q96B49 74 aa11.38□□□□□ -0.59
TOP3A-220ENST00000585031 FAT4Q6V0I7 4981 aa11.37□□□□□ -0.59
TOP3A-220ENST00000585031 A0A0J9YXV3 536 aa11.37□□□□□ -0.59
TOP3A-220ENST00000585031 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.37□□□□□ -0.59
TOP3A-220ENST00000585031 UBE2D3P61077 147 aa11.37□□□□□ -0.59
TOP3A-220ENST00000585031 UBE2D2P62837 147 aa11.37□□□□□ -0.59
TOP3A-220ENST00000585031 C2orf66Q6UXQ4 117 aa11.37□□□□□ -0.59
TOP3A-220ENST00000585031 SCGB3A1Q96QR1 104 aa11.37□□□□□ -0.59
TOP3A-220ENST00000585031 ANGP03950 147 aaKnown RBP11.36□□□□□ -0.59
TOP3A-220ENST00000585031 Q6ZN92 141 aa11.36□□□□□ -0.59
TOP3A-220ENST00000585031 NEXN-AS1Q8NBZ9 246 aa11.36□□□□□ -0.59
TOP3A-220ENST00000585031 SPACA4Q8TDM5 124 aa11.36□□□□□ -0.59
TOP3A-220ENST00000585031 HSBP1L1C9JCN9 74 aa11.35□□□□□ -0.59
TOP3A-220ENST00000585031 CRPP02741 224 aa11.35□□□□□ -0.59
TOP3A-220ENST00000585031 RPL36AP83881 106 aaKnown RBP11.35□□□□□ -0.59
TOP3A-220ENST00000585031 RPL36ALQ969Q0 106 aaKnown RBP11.35□□□□□ -0.59
TOP3A-220ENST00000585031 TRBV6-8A0A0A6YYG3 113 aa11.34□□□□□ -0.59
TOP3A-220ENST00000585031 TSHBP01222 138 aa11.34□□□□□ -0.59
TOP3A-220ENST00000585031 CNBPP62633 177 aaKnown RBP11.34□□□□□ -0.59
TOP3A-220ENST00000585031 CLPSL2Q6UWE3 100 aa11.34□□□□□ -0.59
TOP3A-220ENST00000585031 ERASQ7Z444 233 aa11.34□□□□□ -0.59
TOP3A-220ENST00000585031 ZNF664Q8N3J9 261 aa11.34□□□□□ -0.59
TOP3A-220ENST00000585031 DPH3Q96FX2 82 aa11.34□□□□□ -0.59
TOP3A-220ENST00000585031 PLAC8Q9NZF1 115 aa11.34□□□□□ -0.59
TOP3A-220ENST00000585031 PAM16Q9Y3D7 125 aa11.34□□□□□ -0.59
TOP3A-220ENST00000585031 PRO1933Q9H354 126 aa11.33□□□□□ -0.6
TOP3A-220ENST00000585031 PRR34Q9NV39 138 aa11.33□□□□□ -0.6
TOP3A-220ENST00000585031 TRBV7-3A0A075B6L6 115 aa11.32□□□□□ -0.6
TOP3A-220ENST00000585031 COTL1Q14019 142 aa11.32□□□□□ -0.6
TOP3A-220ENST00000585031 MIAQ16674 131 aa11.32□□□□□ -0.6
TOP3A-220ENST00000585031 SPATA45Q537H7 98 aa11.32□□□□□ -0.6
TOP3A-220ENST00000585031 ATOH7Q8N100 152 aa11.32□□□□□ -0.6
TOP3A-220ENST00000585031 TMEM141Q96I45 108 aa11.32□□□□□ -0.6
TOP3A-220ENST00000585031 TRAV12-1A0A0B4J245 112 aa11.31□□□□□ -0.6
TOP3A-220ENST00000585031 PRR3P79522 188 aaKnown RBP11.31□□□□□ -0.6
TOP3A-220ENST00000585031 TIMM17AQ99595 171 aa11.31□□□□□ -0.6
TOP3A-220ENST00000585031 NTM-AS1Q6ZSK4 140 aa11.3□□□□□ -0.6
TOP3A-220ENST00000585031 LINC00269Q8N2A0 174 aa11.3□□□□□ -0.6
TOP3A-220ENST00000585031 IGHV3-64A0A075B6Q5 118 aa11.29□□□□□ -0.6
TOP3A-220ENST00000585031 PAPPA-AS1Q5QFB9 102 aa11.29□□□□□ -0.6
TOP3A-220ENST00000585031 C20orf203Q8NBC4 194 aa11.29□□□□□ -0.6
TOP3A-220ENST00000585031 PMCHL2Q9BQD1 86 aa11.29□□□□□ -0.6
TOP3A-220ENST00000585031 hDV102S1A0JD36 115 aa11.28□□□□□ -0.6
TOP3A-220ENST00000585031 DPM2O94777 84 aa11.28□□□□□ -0.6
TOP3A-220ENST00000585031 CHCHD5Q9BSY4 110 aa11.28□□□□□ -0.6
TOP3A-220ENST00000585031 IGLV10-54A0A075B6I4 117 aa11.27□□□□□ -0.61
TOP3A-220ENST00000585031 IGIPA6NJ69 53 aa11.27□□□□□ -0.61
TOP3A-220ENST00000585031 NPSP0C0P6 89 aa11.27□□□□□ -0.61
TOP3A-220ENST00000585031 RBX1P62877 108 aa11.27□□□□□ -0.61
TOP3A-220ENST00000585031 RPL39P62891 51 aaKnown RBP11.27□□□□□ -0.61
TOP3A-220ENST00000585031 SMAGPQ0VAQ4 97 aa11.27□□□□□ -0.61
TOP3A-220ENST00000585031 C7orf33Q8WU49 177 aa11.27□□□□□ -0.61
TOP3A-220ENST00000585031 IGKCP01834 107 aa11.26□□□□□ -0.61
TOP3A-220ENST00000585031 PLNP26678 52 aa11.26□□□□□ -0.61
TOP3A-220ENST00000585031 DDTP30046 118 aa11.26□□□□□ -0.61
TOP3A-220ENST00000585031 CHTOPQ9Y3Y2 248 aaKnown RBP11.26□□□□□ -0.61
TOP3A-220ENST00000585031 F8VRH5 84 aa11.25□□□□□ -0.61
TOP3A-220ENST00000585031 PMVKQ15126 192 aa11.25□□□□□ -0.61
TOP3A-220ENST00000585031 TMEM97Q5BJF2 176 aa11.25□□□□□ -0.61
TOP3A-220ENST00000585031 SPANXA1Q9NS26 97 aa11.25□□□□□ -0.61
TOP3A-220ENST00000585031 PYGO1Q9Y3Y4 419 aa11.25□□□□□ -0.61
TOP3A-220ENST00000585031 GAGE6Q13070 117 aa11.24□□□□□ -0.61
TOP3A-220ENST00000585031 SRSF9Q13242 221 aaKnown RBP eCLIP11.24□□□□□ -0.61
TOP3A-220ENST00000585031 MIEN1Q9BRT3 115 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms