RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 TRAV13-1A0A0B4J241 112 aa7.23□□□□□ -1.25
CHD3-216ENST00000573936 EPM2AB3EWF7 344 aa7.23□□□□□ -1.25
CHD3-216ENST00000573936 HSBP1O75506 76 aa7.23□□□□□ -1.25
CHD3-216ENST00000573936 XCL1P47992 114 aa7.23□□□□□ -1.25
CHD3-216ENST00000573936 FOXI1Q12951 378 aa7.23□□□□□ -1.25
CHD3-216ENST00000573936 RNASE13Q5GAN3 156 aaKnown RBP7.23□□□□□ -1.25
CHD3-216ENST00000573936 PAPPA-AS1Q5QFB9 102 aa7.23□□□□□ -1.25
CHD3-216ENST00000573936 Q6ZN92 141 aa7.23□□□□□ -1.25
CHD3-216ENST00000573936 TOMM6Q96B49 74 aa7.23□□□□□ -1.25
CHD3-216ENST00000573936 TMEM141Q96I45 108 aa7.23□□□□□ -1.25
CHD3-216ENST00000573936 TMA7Q9Y2S6 64 aaKnown RBP7.23□□□□□ -1.25
CHD3-216ENST00000573936 IGLV4-3A0A075B6K6 122 aa7.22□□□□□ -1.25
CHD3-216ENST00000573936 IFITM10A6NMD0 228 aa7.22□□□□□ -1.25
CHD3-216ENST00000573936 HBDP02042 147 aa7.22□□□□□ -1.25
CHD3-216ENST00000573936 FUSP35637 526 aaKnown RBP eCLIP7.22□□□□□ -1.25
CHD3-216ENST00000573936 TEX43Q6ZNM6 134 aa7.22□□□□□ -1.25
CHD3-216ENST00000573936 FAM19A2Q8N3H0 131 aa7.22□□□□□ -1.25
CHD3-216ENST00000573936 TIMM17AQ99595 171 aa7.22□□□□□ -1.25
CHD3-216ENST00000573936 DMBT1Q9UGM3 2413 aaPredicted RBP7.21□□□□□ -1.25
CHD3-216ENST00000573936 IGHV1-58A0A0C4DH39 117 aa7.21□□□□□ -1.26
CHD3-216ENST00000573936 hDV102S1A0JD36 115 aa7.21□□□□□ -1.26
CHD3-216ENST00000573936 S100A6P06703 90 aa7.21□□□□□ -1.26
CHD3-216ENST00000573936 PRSS1P07477 247 aa7.21□□□□□ -1.26
CHD3-216ENST00000573936 PDZD11Q5EBL8 140 aa7.21□□□□□ -1.26
CHD3-216ENST00000573936 FAM104AQ969W3 186 aa7.21□□□□□ -1.26
CHD3-216ENST00000573936 OPRPNQ99935 248 aaPredicted RBP7.21□□□□□ -1.26
CHD3-216ENST00000573936 C2orf88Q9BSF0 95 aa7.21□□□□□ -1.26
CHD3-216ENST00000573936 VCX2Q9H322 139 aa7.21□□□□□ -1.26
CHD3-216ENST00000573936 MYCBP2O75592 4640 aa7.21□□□□□ -1.26
CHD3-216ENST00000573936 VPS13BQ7Z7G8 4022 aa7.2□□□□□ -1.26
CHD3-216ENST00000573936 IGIPA6NJ69 53 aa7.2□□□□□ -1.26
CHD3-216ENST00000573936 COX7A2LO14548 114 aa7.2□□□□□ -1.26
CHD3-216ENST00000573936 INAFM2P0DMQ5 153 aa7.2□□□□□ -1.26
CHD3-216ENST00000573936 ERASQ7Z444 233 aa7.2□□□□□ -1.26
CHD3-216ENST00000573936 SCGB3A1Q96QR1 104 aa7.2□□□□□ -1.26
CHD3-216ENST00000573936 APOMO95445 188 aa7.19□□□□□ -1.26
CHD3-216ENST00000573936 MALP21145 153 aa7.19□□□□□ -1.26
CHD3-216ENST00000573936 SNRPEP62304 92 aaKnown RBP7.19□□□□□ -1.26
CHD3-216ENST00000573936 HIST3H2BBQ8N257 126 aa7.19□□□□□ -1.26
CHD3-216ENST00000573936 AMELXQ99217 191 aa7.19□□□□□ -1.26
CHD3-216ENST00000573936 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.18□□□□□ -1.26
CHD3-216ENST00000573936 C5orf52A6NGY3 159 aa7.18□□□□□ -1.26
CHD3-216ENST00000573936 KRTAP10-1P60331 282 aa7.18□□□□□ -1.26
CHD3-216ENST00000573936 CNBPP62633 177 aaKnown RBP7.18□□□□□ -1.26
CHD3-216ENST00000573936 SEC11AP67812 179 aa7.18□□□□□ -1.26
CHD3-216ENST00000573936 LINC00173Q6ZV60 143 aa7.18□□□□□ -1.26
CHD3-216ENST00000573936 C15orf56Q8N910 161 aa7.18□□□□□ -1.26
CHD3-216ENST00000573936 GVQW2A0A096LPI5 108 aaPredicted RBP7.17□□□□□ -1.26
CHD3-216ENST00000573936 ZNF561-AS1K7EIQ3 104 aa7.17□□□□□ -1.26
CHD3-216ENST00000573936 FABP4P15090 132 aa7.17□□□□□ -1.26
CHD3-216ENST00000573936 UBE2D1P51668 147 aa7.17□□□□□ -1.26
CHD3-216ENST00000573936 C5orf38Q86SI9 138 aa7.17□□□□□ -1.26
CHD3-216ENST00000573936 IGHV3OR16-9A0A0B4J2B5 98 aa7.16□□□□□ -1.26
CHD3-216ENST00000573936 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.16□□□□□ -1.26
CHD3-216ENST00000573936 ATP5LO75964 103 aa7.16□□□□□ -1.26
CHD3-216ENST00000573936 LEPROTL1O95214 131 aa7.16□□□□□ -1.26
CHD3-216ENST00000573936 HIGD2BQ4VC39 106 aa7.16□□□□□ -1.26
CHD3-216ENST00000573936 FAM19A3Q7Z5A8 133 aa7.16□□□□□ -1.26
CHD3-216ENST00000573936 C9orf163Q8N9P6 203 aa7.16□□□□□ -1.26
CHD3-216ENST00000573936 SRRM2Q9UQ35 2752 aaKnown RBP7.16□□□□□ -1.26
CHD3-216ENST00000573936 LINC00242Q5T6M2 205 aa7.15□□□□□ -1.26
CHD3-216ENST00000573936 ZC2HC1BQ5TFG8 222 aa7.15□□□□□ -1.26
CHD3-216ENST00000573936 LINC01561Q8N1V8 128 aa7.15□□□□□ -1.26
CHD3-216ENST00000573936 IFI27L1Q96BM0 104 aa7.15□□□□□ -1.26
CHD3-216ENST00000573936 PACRGQ96M98 296 aaPredicted RBP7.15□□□□□ -1.26
CHD3-216ENST00000573936 HIST1H2BLQ99880 126 aa7.15□□□□□ -1.26
CHD3-216ENST00000573936 HSPB8Q9UJY1 196 aa7.15□□□□□ -1.26
CHD3-216ENST00000573936 IGHV3-64A0A075B6Q5 118 aa7.14□□□□□ -1.27
CHD3-216ENST00000573936 F8WDY8 70 aa7.14□□□□□ -1.27
CHD3-216ENST00000573936 S100A2P29034 98 aa7.14□□□□□ -1.27
CHD3-216ENST00000573936 HERVK_113P63121 156 aa7.14□□□□□ -1.27
CHD3-216ENST00000573936 PMVKQ15126 192 aa7.14□□□□□ -1.27
CHD3-216ENST00000573936 OR10D4PQ8NGN7 298 aa7.14□□□□□ -1.27
CHD3-216ENST00000573936 PKIGQ9Y2B9 76 aa7.14□□□□□ -1.27
CHD3-216ENST00000573936 A0A087WZ39 114 aa7.13□□□□□ -1.27
CHD3-216ENST00000573936 SLPIP03973 132 aa7.13□□□□□ -1.27
CHD3-216ENST00000573936 COX6A2Q02221 97 aa7.13□□□□□ -1.27
CHD3-216ENST00000573936 C2orf48Q96LS8 159 aa7.13□□□□□ -1.27
CHD3-216ENST00000573936 CST9LQ9H4G1 147 aa7.13□□□□□ -1.27
CHD3-216ENST00000573936 GEMIN7Q9H840 131 aaKnown RBP7.13□□□□□ -1.27
CHD3-216ENST00000573936 DNAH8Q96JB1 4490 aa7.12□□□□□ -1.27
CHD3-216ENST00000573936 XGP55808 180 aa7.12□□□□□ -1.27
CHD3-216ENST00000573936 SPAG11BQ08648 103 aa7.12□□□□□ -1.27
CHD3-216ENST00000573936 LINC01620Q4KN68 170 aa7.12□□□□□ -1.27
CHD3-216ENST00000573936 Q6ZSA8 131 aa7.12□□□□□ -1.27
CHD3-216ENST00000573936 ORAOV1Q8WV07 137 aa7.12□□□□□ -1.27
CHD3-216ENST00000573936 FLG2Q5D862 2391 aaPredicted RBP7.11□□□□□ -1.27
CHD3-216ENST00000573936 IGLV4-69A0A075B6H9 119 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 A0A0J9YXV3 536 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 TINCRA0A1B0GVN0 87 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 C3orf79P0CE67 100 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 SYCNQ0VAF6 134 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 Q5VSD8 79 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 SDIM1Q6ZPB5 146 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 CARD19Q96LW7 228 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 CAMK2N2Q96S95 79 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 MAP1LC3CQ9BXW4 147 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 FAM30AQ9NZY2 134 aa7.11□□□□□ -1.27
CHD3-216ENST00000573936 TRAV12-1A0A0B4J245 112 aa7.1□□□□□ -1.27
CHD3-216ENST00000573936 H0Y8G0 127 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 164.3 ms