RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 MRPL54Q6P161 138 aaKnown RBP4.75□□□□□ -1.65
NUP88-205ENST00000572809 C20orf78Q9BR46 151 aa4.75□□□□□ -1.65
NUP88-205ENST00000572809 CSDC2Q9Y534 153 aaKnown RBP4.75□□□□□ -1.65
NUP88-205ENST00000572809 VPS13BQ7Z7G8 4022 aa4.74□□□□□ -1.65
NUP88-205ENST00000572809 TCAPO15273 167 aa4.74□□□□□ -1.65
NUP88-205ENST00000572809 RPL32P62910 135 aaKnown RBP4.74□□□□□ -1.65
NUP88-205ENST00000572809 HBBP68871 147 aa4.74□□□□□ -1.65
NUP88-205ENST00000572809 CD164L2Q6UWJ8 174 aa4.74□□□□□ -1.65
NUP88-205ENST00000572809 UBE2D4Q9Y2X8 147 aa4.74□□□□□ -1.65
NUP88-205ENST00000572809 FLG2Q5D862 2391 aaPredicted RBP4.73□□□□□ -1.65
NUP88-205ENST00000572809 A0A087WYN8 130 aa4.73□□□□□ -1.65
NUP88-205ENST00000572809 GVQW2A0A096LPI5 108 aaPredicted RBP4.73□□□□□ -1.65
NUP88-205ENST00000572809 IGHV1-58A0A0C4DH39 117 aa4.73□□□□□ -1.65
NUP88-205ENST00000572809 A0A1B0GXF2 115 aa4.73□□□□□ -1.65
NUP88-205ENST00000572809 C1orf196B1AJZ1 125 aa4.73□□□□□ -1.65
NUP88-205ENST00000572809 D6R8Y8 96 aa4.73□□□□□ -1.65
NUP88-205ENST00000572809 PPBPP02775 128 aa4.73□□□□□ -1.65
NUP88-205ENST00000572809 KRTAP10-4P60372 401 aaPredicted RBP4.73□□□□□ -1.65
NUP88-205ENST00000572809 SEC61BP60468 96 aaKnown RBP4.73□□□□□ -1.65
NUP88-205ENST00000572809 RPL37AP61513 92 aaKnown RBP4.73□□□□□ -1.65
NUP88-205ENST00000572809 COX6A2Q02221 97 aa4.73□□□□□ -1.65
NUP88-205ENST00000572809 PNRC1Q12796 327 aaPredicted RBP4.73□□□□□ -1.65
NUP88-205ENST00000572809 CIRBPQ14011 172 aaKnown RBP4.73□□□□□ -1.65
NUP88-205ENST00000572809 TIMM21Q9BVV7 248 aa4.73□□□□□ -1.65
NUP88-205ENST00000572809 PHOX2AO14813 284 aa4.72□□□□□ -1.65
NUP88-205ENST00000572809 MT-ND4LP03901 98 aa4.72□□□□□ -1.65
NUP88-205ENST00000572809 CHTF8P0CG12 524 aa4.72□□□□□ -1.65
NUP88-205ENST00000572809 RNASE13Q5GAN3 156 aaKnown RBP4.72□□□□□ -1.65
NUP88-205ENST00000572809 TMEM136Q6ZRR5 245 aa4.72□□□□□ -1.65
NUP88-205ENST00000572809 ATP5L2Q7Z4Y8 100 aa4.72□□□□□ -1.65
NUP88-205ENST00000572809 SMIM2Q9BVW6 85 aa4.72□□□□□ -1.65
NUP88-205ENST00000572809 DMBT1Q9UGM3 2413 aaPredicted RBP4.71□□□□□ -1.66
NUP88-205ENST00000572809 TRAV13-1A0A0B4J241 112 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 NPYP01303 97 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 RPL39P62891 51 aaKnown RBP4.71□□□□□ -1.66
NUP88-205ENST00000572809 GAGE2BQ13066 116 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 GAGE2EQ4V326 116 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 CLLU1Q5K131 121 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 GAGE2AQ6NT46 116 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 ORMDL3Q8N138 153 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 PRR26Q8N8Z3 221 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 SPACA4Q8TDM5 124 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 LINC00526Q96FQ7 95 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 PRELID3AQ96N28 172 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 GAGE2DQ9UEU5 116 aa4.71□□□□□ -1.66
NUP88-205ENST00000572809 IGKV2-24A0A0C4DH68 120 aa4.7□□□□□ -1.66
NUP88-205ENST00000572809 COX7A2LO14548 114 aa4.7□□□□□ -1.66
NUP88-205ENST00000572809 RAB5AP20339 215 aa4.7□□□□□ -1.66
NUP88-205ENST00000572809 SNRPEP62304 92 aaKnown RBP4.7□□□□□ -1.66
NUP88-205ENST00000572809 SYCNQ0VAF6 134 aa4.7□□□□□ -1.66
NUP88-205ENST00000572809 MAJINQ3KP22 176 aa4.7□□□□□ -1.66
NUP88-205ENST00000572809 Q6ZUT4 128 aa4.7□□□□□ -1.66
NUP88-205ENST00000572809 C5orf38Q86SI9 138 aa4.7□□□□□ -1.66
NUP88-205ENST00000572809 OPRPNQ99935 248 aaPredicted RBP4.7□□□□□ -1.66
NUP88-205ENST00000572809 SPANXA1Q9NS26 97 aa4.7□□□□□ -1.66
NUP88-205ENST00000572809 PLAC8Q9NZF1 115 aa4.7□□□□□ -1.66
NUP88-205ENST00000572809 IGLV4-69A0A075B6H9 119 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 A0A096LNI7 61 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 LOC389332A0A1B0GUA5 103 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 APOMO95445 188 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 OXTP01178 125 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 PRSS2P07478 247 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 MRPS36P82909 103 aaKnown RBP4.69□□□□□ -1.66
NUP88-205ENST00000572809 STPG4Q8N801 248 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 FAM104AQ969W3 186 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 CARD19Q96LW7 228 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 LINC00474Q9P2X8 69 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 PKIGQ9Y2B9 76 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 LAMTOR2Q9Y2Q5 125 aa4.69□□□□□ -1.66
NUP88-205ENST00000572809 HNRNPA3P51991 378 aaKnown RBP4.68□□□□□ -1.66
NUP88-205ENST00000572809 IFITM2Q01629 132 aa4.68□□□□□ -1.66
NUP88-205ENST00000572809 UBE2V1Q13404 147 aa4.68□□□□□ -1.66
NUP88-205ENST00000572809 PAPPA-AS1Q5QFB9 102 aa4.68□□□□□ -1.66
NUP88-205ENST00000572809 UQCC3Q6UW78 93 aa4.68□□□□□ -1.66
NUP88-205ENST00000572809 PET117Q6UWS5 81 aa4.68□□□□□ -1.66
NUP88-205ENST00000572809 C7orf33Q8WU49 177 aa4.68□□□□□ -1.66
NUP88-205ENST00000572809 C2orf48Q96LS8 159 aa4.68□□□□□ -1.66
NUP88-205ENST00000572809 MAP1LC3AQ9H492 121 aa4.68□□□□□ -1.66
NUP88-205ENST00000572809 PYGO1Q9Y3Y4 419 aa4.68□□□□□ -1.66
NUP88-205ENST00000572809 LOC107984640A0A0U1RRK4 108 aa4.67□□□□□ -1.66
NUP88-205ENST00000572809 TMEM218A2RU14 115 aa4.67□□□□□ -1.66
NUP88-205ENST00000572809 IFI27P40305 119 aaPredicted RBP4.67□□□□□ -1.66
NUP88-205ENST00000572809 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.67□□□□□ -1.66
NUP88-205ENST00000572809 Q6ZRU5 148 aa4.67□□□□□ -1.66
NUP88-205ENST00000572809 Q8N8P6 123 aa4.67□□□□□ -1.66
NUP88-205ENST00000572809 CAMK2N2Q96S95 79 aa4.67□□□□□ -1.66
NUP88-205ENST00000572809 IMMP2LQ96T52 175 aa4.67□□□□□ -1.66
NUP88-205ENST00000572809 MYCBP2O75592 4640 aa4.66□□□□□ -1.66
NUP88-205ENST00000572809 IGHV3OR16-9A0A0B4J2B5 98 aa4.66□□□□□ -1.66
NUP88-205ENST00000572809 IFITM10A6NMD0 228 aa4.66□□□□□ -1.66
NUP88-205ENST00000572809 OR10D4PQ8NGN7 298 aa4.66□□□□□ -1.66
NUP88-205ENST00000572809 IGLV4-3A0A075B6K6 122 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 F8WDY8 70 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 K7EMI3 77 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 ADCYAP1P18509 176 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 SPAG11BQ08648 103 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 ORMDL2Q53FV1 153 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 C2orf66Q6UXQ4 117 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 ORAOV1Q8WV07 137 aa4.65□□□□□ -1.67
NUP88-205ENST00000572809 TMEM141Q96I45 108 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms