RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NCR3O14931 201 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 UBE2E2Q96LR5 201 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 KLKP1Q107X0 134 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 KLK9Q2XQG4 91 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 FAM222AQ5U5X8 452 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 ITLN2Q8WWU7 325 aaPredicted RBP7.89□□□□□ -1.15
CLK3-226ENST00000569406 KLK9Q9UKQ9 250 aa7.89□□□□□ -1.15
CLK3-226ENST00000569406 A0A0J9YX75 114 aa7.88□□□□□ -1.15
CLK3-226ENST00000569406 TRAV21A0A0B4J279 112 aa7.88□□□□□ -1.15
CLK3-226ENST00000569406 LMO4P61968 165 aa7.88□□□□□ -1.15
CLK3-226ENST00000569406 COX8CQ7Z4L0 72 aa7.88□□□□□ -1.15
CLK3-226ENST00000569406 TIMM17AQ99595 171 aa7.88□□□□□ -1.15
CLK3-226ENST00000569406 LAMTOR3Q9UHA4 124 aa7.88□□□□□ -1.15
CLK3-226ENST00000569406 IGHV7-81A0A0B4J1V7 117 aa7.87□□□□□ -1.15
CLK3-226ENST00000569406 Q8N9W7 124 aa7.87□□□□□ -1.15
CLK3-226ENST00000569406 POLQO75417 2590 aa7.87□□□□□ -1.15
CLK3-226ENST00000569406 CENPEQ02224 2701 aa7.87□□□□□ -1.15
CLK3-226ENST00000569406 BEAN1Q3B7T3 259 aa7.87□□□□□ -1.15
CLK3-226ENST00000569406 A0A087WWL8 130 aa7.86□□□□□ -1.15
CLK3-226ENST00000569406 TRAV13-2A0A0B4J235 113 aa7.86□□□□□ -1.15
CLK3-226ENST00000569406 SMAD5-AS1Q9Y6J3 95 aa7.86□□□□□ -1.15
CLK3-226ENST00000569406 F6UB75 175 aa7.86□□□□□ -1.15
CLK3-226ENST00000569406 PSPHP1O15172 72 aa7.86□□□□□ -1.15
CLK3-226ENST00000569406 CTSGP08311 255 aa7.86□□□□□ -1.15
CLK3-226ENST00000569406 RNF223E7ERA6 249 aa7.85□□□□□ -1.15
CLK3-226ENST00000569406 ESRGQ1W209 222 aa7.85□□□□□ -1.15
CLK3-226ENST00000569406 ATP6V0E1O15342 81 aa7.85□□□□□ -1.15
CLK3-226ENST00000569406 PIK3CD-AS1Q5SR53 167 aa7.85□□□□□ -1.15
CLK3-226ENST00000569406 UBR5O95071 2799 aaPredicted RBP7.85□□□□□ -1.15
CLK3-226ENST00000569406 PF4P02776 101 aa7.84□□□□□ -1.15
CLK3-226ENST00000569406 RNASE13Q5GAN3 156 aaKnown RBP7.84□□□□□ -1.15
CLK3-226ENST00000569406 VCYO14598 125 aa7.84□□□□□ -1.16
CLK3-226ENST00000569406 IGHV1-58A0A0C4DH39 117 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 PPP1R17O96001 155 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 ATP5EP56381 51 aaPredicted RBP7.83□□□□□ -1.16
CLK3-226ENST00000569406 DOPEY1Q5JWR5 2465 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 TRAV10A0A0B4J240 114 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 CLPSL1A2RUU4 121 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 IGF1P05019 195 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 C19orf54Q5BKX5 351 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 MINOS1Q5TGZ0 78 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 BRD3OSQ6XYD6 125 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 MINOS1-NBL1R4GNA1 71 aa7.83□□□□□ -1.16
CLK3-226ENST00000569406 IGHV1OR15-1A0A075B7D0 117 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 MIFP14174 115 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 C9orf47Q6ZRZ4 202 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 GNRH2O43555 120 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 GPHB5Q86YW7 130 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 ZFAND3Q9H8U3 227 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 USP24Q9UPU5 2620 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 NDUFC1O43677 76 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 KHDC1LQ5JSQ8 128 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 DGAT2L7PQ6IED9 249 aa7.82□□□□□ -1.16
CLK3-226ENST00000569406 IGHV3-73A0A0B4J1V6 119 aa7.81□□□□□ -1.16
CLK3-226ENST00000569406 GNLYP22749 145 aa7.81□□□□□ -1.16
CLK3-226ENST00000569406 CCDC140Q96MF4 163 aa7.81□□□□□ -1.16
CLK3-226ENST00000569406 FN1P02751 2386 aaKnown RBP7.81□□□□□ -1.16
CLK3-226ENST00000569406 IGHV4-4A0A075B6R2 117 aa7.81□□□□□ -1.16
CLK3-226ENST00000569406 SLPIP03973 132 aa7.81□□□□□ -1.16
CLK3-226ENST00000569406 LINC00308Q8TCZ7 52 aa7.81□□□□□ -1.16
CLK3-226ENST00000569406 UNQ9165/PRO28630Q6UXU0 137 aa7.8□□□□□ -1.16
CLK3-226ENST00000569406 UBL5Q9BZL1 73 aa7.8□□□□□ -1.16
CLK3-226ENST00000569406 A0A087WYN8 130 aa7.8□□□□□ -1.16
CLK3-226ENST00000569406 ATP5EP2Q5VTU8 51 aa7.8□□□□□ -1.16
CLK3-226ENST00000569406 JMJD1CQ15652 2540 aa7.8□□□□□ -1.16
CLK3-226ENST00000569406 KTN1-AS1Q86SY8 53 aa7.79□□□□□ -1.16
CLK3-226ENST00000569406 SPTSSBQ8NFR3 76 aa7.79□□□□□ -1.16
CLK3-226ENST00000569406 HAMPP81172 84 aa7.79□□□□□ -1.16
CLK3-226ENST00000569406 MIR7-3HGQ8N6C7 128 aa7.79□□□□□ -1.16
CLK3-226ENST00000569406 RNASE1P07998 156 aaKnown RBP7.79□□□□□ -1.16
CLK3-226ENST00000569406 CD28P10747 220 aa7.79□□□□□ -1.16
CLK3-226ENST00000569406 C5orf56Q8N8D9 126 aa7.78□□□□□ -1.16
CLK3-226ENST00000569406 TM2D3Q9BRN9 247 aa7.78□□□□□ -1.16
CLK3-226ENST00000569406 LECT2O14960 151 aa7.78□□□□□ -1.16
CLK3-226ENST00000569406 POLR2KP53803 58 aaKnown RBP7.77□□□□□ -1.16
CLK3-226ENST00000569406 A8MU10 97 aa7.77□□□□□ -1.17
CLK3-226ENST00000569406 K7EMT4 169 aa7.77□□□□□ -1.17
CLK3-226ENST00000569406 IGHV1-69P01742 117 aa7.77□□□□□ -1.17
CLK3-226ENST00000569406 FUSP35637 526 aaKnown RBP eCLIP7.77□□□□□ -1.17
CLK3-226ENST00000569406 SUMO4Q6EEV6 95 aa7.77□□□□□ -1.17
CLK3-226ENST00000569406 IBA57-AS1B1ANH7 110 aa7.76□□□□□ -1.17
CLK3-226ENST00000569406 IGLV4-3A0A075B6K6 122 aa7.76□□□□□ -1.17
CLK3-226ENST00000569406 IGHV4-61A0A0C4DH41 118 aa7.76□□□□□ -1.17
CLK3-226ENST00000569406 TMEM256-PLSCR3K7ERE1 68 aa7.76□□□□□ -1.17
CLK3-226ENST00000569406 NAV2Q8IVL1 2488 aa7.76□□□□□ -1.17
CLK3-226ENST00000569406 Q9H8V8 135 aa7.75□□□□□ -1.17
CLK3-226ENST00000569406 IGHV3OR16-12A0A075B7B8 117 aa7.75□□□□□ -1.17
CLK3-226ENST00000569406 PRR9Q5T870 116 aa7.75□□□□□ -1.17
CLK3-226ENST00000569406 TEX15Q9BXT5 2789 aa7.74□□□□□ -1.17
CLK3-226ENST00000569406 RHPN1-AS1Q9BWJ2 59 aa7.74□□□□□ -1.17
CLK3-226ENST00000569406 HIVEP2P31629 2446 aa7.74□□□□□ -1.17
CLK3-226ENST00000569406 M0R378 163 aa7.74□□□□□ -1.17
CLK3-226ENST00000569406 CRPP02741 224 aa7.74□□□□□ -1.17
CLK3-226ENST00000569406 TMEM254Q8TBM7 123 aa7.74□□□□□ -1.17
CLK3-226ENST00000569406 APCP25054 2843 aa7.73□□□□□ -1.17
CLK3-226ENST00000569406 PRB2P02812 416 aaPredicted RBP7.73□□□□□ -1.17
CLK3-226ENST00000569406 IGHV4-38-2P0DP08 117 aa7.73□□□□□ -1.17
CLK3-226ENST00000569406 RPL36AP83881 106 aaKnown RBP7.73□□□□□ -1.17
CLK3-226ENST00000569406 DYNLRB2Q8TF09 96 aa7.73□□□□□ -1.17
CLK3-226ENST00000569406 RPL36ALQ969Q0 106 aaKnown RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms