RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 LINC01547P58512 204 aaPredicted RBP4.19□□□□□ -1.74
VPS39-209ENST00000568029 EGFEM1PQ0D2K5 195 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 SMAGPQ0VAQ4 97 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 TAL2Q16559 108 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 UFSP1Q6NVU6 142 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 C11orf72Q8NBR9 251 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 OR4C5Q8NGB2 326 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 TMEM263Q8WUH6 116 aaKnown RBP4.19□□□□□ -1.74
VPS39-209ENST00000568029 VCX2Q9H322 139 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 MRPL16Q9NX20 251 aaKnown RBP4.19□□□□□ -1.74
VPS39-209ENST00000568029 PYGO1Q9Y3Y4 419 aa4.19□□□□□ -1.74
VPS39-209ENST00000568029 TRBV25-1A0A075B6N4 114 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 IGKV2D-26A0A0A0MRZ7 120 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 TRGV1A0A0A0MS02 117 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 MYMXA0A1B0GTQ4 84 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 C11orf86A6NJI1 115 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 H3BRM9 83 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 SMIM13P0DJ93 91 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 P0DMU3 169 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 FAM231AP0DMU4 169 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 FAM231CP0DMU5 169 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 RPL35AP18077 110 aaKnown RBP4.18□□□□□ -1.74
VPS39-209ENST00000568029 RPL39P62891 51 aaKnown RBP4.18□□□□□ -1.74
VPS39-209ENST00000568029 DAZ2Q13117 558 aaKnown RBP4.18□□□□□ -1.74
VPS39-209ENST00000568029 COTL1Q14019 142 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 VAMP3Q15836 100 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 RRN3P1Q2M238 152 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 C9orf66Q5T8R8 295 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 WFDC9Q8NEX5 89 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 C16orf74Q96GX8 76 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 SPANXA1Q9NS26 97 aa4.18□□□□□ -1.74
VPS39-209ENST00000568029 HSPG2P98160 4391 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 TRAV4A0A0B4J268 109 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 TRBV10-1A0A0K0K1A3 114 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 TAX1BP3O14907 124 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 PRM2P04554 102 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 TMEM170BQ5T4T1 132 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 RNASE8Q8TDE3 154 aaKnown RBP4.17□□□□□ -1.74
VPS39-209ENST00000568029 HIST1H4GQ99525 98 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 PRADC1Q9BSG0 188 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 CHAC1Q9BUX1 264 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 TP73-AS1Q9UF72 201 aa4.17□□□□□ -1.74
VPS39-209ENST00000568029 DNAH11Q96DT5 4516 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 IGLV4-69A0A075B6H9 119 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 IGLV4-3A0A075B6K6 122 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 TRBV7-3A0A075B6L6 115 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 CDK2AP2O75956 126 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 DAZ4Q86SG3 579 aaKnown RBP4.16□□□□□ -1.74
VPS39-209ENST00000568029 CEND1Q8N111 149 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 DEFB104AQ8WTQ1 72 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 PLEKHB2Q96CS7 222 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 OVOL2Q9BRP0 275 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 TIMM21Q9BVV7 248 aa4.16□□□□□ -1.74
VPS39-209ENST00000568029 NOP10Q9NPE3 64 aaKnown RBP4.16□□□□□ -1.74
VPS39-209ENST00000568029 DAZ3Q9NR90 486 aaKnown RBP4.16□□□□□ -1.74
VPS39-209ENST00000568029 TRGV2A0A075B6R0 118 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 SMIM9A6NGZ8 99 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 ZNF815PA8K554 130 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 K7EQD1 137 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 LEPROTO15243 131 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 GIG44P09565 113 aaPredicted RBP4.15□□□□□ -1.75
VPS39-209ENST00000568029 LGALS3P17931 250 aaKnown RBP4.15□□□□□ -1.75
VPS39-209ENST00000568029 MT3P25713 68 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 MRPS36P82909 103 aaKnown RBP4.15□□□□□ -1.75
VPS39-209ENST00000568029 SRSF9Q13242 221 aaKnown RBP eCLIP4.15□□□□□ -1.75
VPS39-209ENST00000568029 AMMECR1LQ6DCA0 310 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 SCGB1D4Q6XE38 83 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 Q6ZTI0 123 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 GTF2H5Q6ZYL4 71 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 SBSPONQ8IVN8 264 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 CSNK1G2-AS1Q8NCQ2 148 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 ZNRF2Q8NHG8 242 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 AMELXQ99217 191 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 TTTY13Q9BZ97 58 aa4.15□□□□□ -1.75
VPS39-209ENST00000568029 PKD1P98161 4303 aa4.14□□□□□ -1.75
VPS39-209ENST00000568029 MUC4Q99102 2169 aa4.14□□□□□ -1.75
VPS39-209ENST00000568029 TRGV4A0A0C4DH28 118 aa4.14□□□□□ -1.75
VPS39-209ENST00000568029 A0A0J9YXV3 536 aa4.14□□□□□ -1.75
VPS39-209ENST00000568029 TINCRA0A1B0GVN0 87 aa4.14□□□□□ -1.75
VPS39-209ENST00000568029 TRBV6-4A0A1B0GX49 114 aa4.14□□□□□ -1.75
VPS39-209ENST00000568029 J3QQQ9 107 aa4.14□□□□□ -1.75
VPS39-209ENST00000568029 EMP1P54849 157 aa4.14□□□□□ -1.75
VPS39-209ENST00000568029 OPRPNQ99935 248 aaPredicted RBP4.14□□□□□ -1.75
VPS39-209ENST00000568029 CHCHD7Q9BUK0 85 aa4.14□□□□□ -1.75
VPS39-209ENST00000568029 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.13□□□□□ -1.75
VPS39-209ENST00000568029 IGHV3-38A0A0C4DH36 116 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 TMEM223A0PJW6 202 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 IGKV2-29A2NJV5 120 aaPredicted RBP4.13□□□□□ -1.75
VPS39-209ENST00000568029 H7C423 109 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 CCL25O15444 150 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 FABP2P12104 132 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 FXYD2P54710 66 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 APOC4P55056 127 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 UBE2D3P61077 147 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 UBE2D2P62837 147 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 Q6ZVH6 145 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 KIR2DL5BQ8NHK3 375 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 RAB37Q96AX2 223 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 TMEM101Q96IK0 257 aa4.13□□□□□ -1.75
VPS39-209ENST00000568029 WFDC10AQ9H1F0 79 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms