RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 IFI27P40305 119 aaPredicted RBP13.01□□□□□ -0.33
CLN3-219ENST00000565778 CLLU1Q5K131 121 aa13.01□□□□□ -0.33
CLN3-219ENST00000565778 C2orf48Q96LS8 159 aa13.01□□□□□ -0.33
CLN3-219ENST00000565778 MAP1LC3AQ9H492 121 aa13.01□□□□□ -0.33
CLN3-219ENST00000565778 PRSS47A8MTI9 375 aa13□□□□□ -0.33
CLN3-219ENST00000565778 SPAG11BQ08648 103 aa13□□□□□ -0.33
CLN3-219ENST00000565778 LAMTOR2Q9Y2Q5 125 aa13□□□□□ -0.33
CLN3-219ENST00000565778 PTTG1IPP53801 180 aa12.99□□□□□ -0.33
CLN3-219ENST00000565778 IGHV3OR16-9A0A0B4J2B5 98 aa12.98□□□□□ -0.33
CLN3-219ENST00000565778 OR10D4PQ8NGN7 298 aa12.98□□□□□ -0.33
CLN3-219ENST00000565778 PYGO1Q9Y3Y4 419 aa12.98□□□□□ -0.33
CLN3-219ENST00000565778 ORAOV1Q8WV07 137 aa12.97□□□□□ -0.33
CLN3-219ENST00000565778 FAT3Q8TDW7 4589 aa12.97□□□□□ -0.33
CLN3-219ENST00000565778 A0A0J9YXV3 536 aa12.96□□□□□ -0.33
CLN3-219ENST00000565778 Q8N8P6 123 aa12.96□□□□□ -0.33
CLN3-219ENST00000565778 CTDSP1Q9GZU7 261 aa12.96□□□□□ -0.33
CLN3-219ENST00000565778 IGLV4-3A0A075B6K6 122 aa12.95□□□□□ -0.34
CLN3-219ENST00000565778 TGIF2-C20orf24A0A0A6YYL0 155 aa12.95□□□□□ -0.34
CLN3-219ENST00000565778 PRR3P79522 188 aaKnown RBP12.95□□□□□ -0.34
CLN3-219ENST00000565778 TMEM141Q96I45 108 aa12.95□□□□□ -0.34
CLN3-219ENST00000565778 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.94□□□□□ -0.34
CLN3-219ENST00000565778 RPL18AQ02543 176 aaKnown RBP12.94□□□□□ -0.34
CLN3-219ENST00000565778 RNF151Q2KHN1 245 aa12.94□□□□□ -0.34
CLN3-219ENST00000565778 F8WDY8 70 aa12.93□□□□□ -0.34
CLN3-219ENST00000565778 UQCC3Q6UW78 93 aa12.93□□□□□ -0.34
CLN3-219ENST00000565778 IMMP2LQ96T52 175 aa12.93□□□□□ -0.34
CLN3-219ENST00000565778 CYSLTR1Q9Y271 337 aa12.93□□□□□ -0.34
CLN3-219ENST00000565778 A0A1W2PNN7 141 aa12.92□□□□□ -0.34
CLN3-219ENST00000565778 TMEM218A2RU14 115 aa12.92□□□□□ -0.34
CLN3-219ENST00000565778 NDUFA1O15239 70 aa12.92□□□□□ -0.34
CLN3-219ENST00000565778 ORMDL2Q53FV1 153 aa12.92□□□□□ -0.34
CLN3-219ENST00000565778 C2orf66Q6UXQ4 117 aa12.92□□□□□ -0.34
CLN3-219ENST00000565778 TEX43Q6ZNM6 134 aa12.92□□□□□ -0.34
CLN3-219ENST00000565778 IFITM2Q01629 132 aa12.91□□□□□ -0.34
CLN3-219ENST00000565778 LINC00242Q5T6M2 205 aa12.91□□□□□ -0.34
CLN3-219ENST00000565778 Q6ZRP5 223 aa12.91□□□□□ -0.34
CLN3-219ENST00000565778 MRPL35Q9NZE8 188 aaKnown RBP12.91□□□□□ -0.34
CLN3-219ENST00000565778 A0A087WZ39 114 aa12.9□□□□□ -0.34
CLN3-219ENST00000565778 MT1HL1P0DM35 61 aa12.9□□□□□ -0.34
CLN3-219ENST00000565778 C9orf116Q5BN46 136 aaPredicted RBP12.9□□□□□ -0.34
CLN3-219ENST00000565778 UNQ6190/PRO20217Q6UXQ8 127 aa12.9□□□□□ -0.34
CLN3-219ENST00000565778 Q6ZN92 141 aa12.9□□□□□ -0.34
CLN3-219ENST00000565778 C2orf88Q9BSF0 95 aa12.9□□□□□ -0.34
CLN3-219ENST00000565778 VCX2Q9H322 139 aa12.9□□□□□ -0.34
CLN3-219ENST00000565778 K7EMI3 77 aa12.89□□□□□ -0.35
CLN3-219ENST00000565778 ADCYAP1P18509 176 aa12.89□□□□□ -0.35
CLN3-219ENST00000565778 NXT2Q9NPJ8 142 aaKnown RBP12.89□□□□□ -0.35
CLN3-219ENST00000565778 KIAA1644Q3SXP7 199 aa12.88□□□□□ -0.35
CLN3-219ENST00000565778 C10orf25Q5T742 122 aa12.88□□□□□ -0.35
CLN3-219ENST00000565778 ZC2HC1BQ5TFG8 222 aa12.88□□□□□ -0.35
CLN3-219ENST00000565778 UBE2D1P51668 147 aa12.87□□□□□ -0.35
CLN3-219ENST00000565778 SPINK6Q6UWN8 80 aa12.87□□□□□ -0.35
CLN3-219ENST00000565778 G0S2P27469 103 aa12.86□□□□□ -0.35
CLN3-219ENST00000565778 PLA2G2DQ9UNK4 145 aa12.86□□□□□ -0.35
CLN3-219ENST00000565778 IGIPA6NJ69 53 aa12.85□□□□□ -0.35
CLN3-219ENST00000565778 KIAA0087Q14695 138 aa12.85□□□□□ -0.35
CLN3-219ENST00000565778 AMELXQ99217 191 aa12.85□□□□□ -0.35
CLN3-219ENST00000565778 SEC11CQ9BY50 192 aa12.85□□□□□ -0.35
CLN3-219ENST00000565778 C6orf48Q9UBA6 75 aa12.85□□□□□ -0.35
CLN3-219ENST00000565778 TRAV9-1A0A075B6T8 112 aa12.84□□□□□ -0.35
CLN3-219ENST00000565778 NPSP0C0P6 89 aa12.84□□□□□ -0.35
CLN3-219ENST00000565778 S100PP25815 95 aa12.84□□□□□ -0.35
CLN3-219ENST00000565778 SRSF9Q13242 221 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLN3-219ENST00000565778 LINC00173Q6ZV60 143 aa12.83□□□□□ -0.36
CLN3-219ENST00000565778 PHF5AQ7RTV0 110 aaKnown RBP12.83□□□□□ -0.36
CLN3-219ENST00000565778 LINC01561Q8N1V8 128 aa12.83□□□□□ -0.36
CLN3-219ENST00000565778 LINC01600Q96MT4 127 aa12.83□□□□□ -0.36
CLN3-219ENST00000565778 MT-ND6P03923 174 aa12.82□□□□□ -0.36
CLN3-219ENST00000565778 TLX1NBP0CAT3 122 aa12.82□□□□□ -0.36
CLN3-219ENST00000565778 GAGE2EQ4V326 116 aa12.82□□□□□ -0.36
CLN3-219ENST00000565778 PAPPA-AS1Q5QFB9 102 aa12.82□□□□□ -0.36
CLN3-219ENST00000565778 GAGE2DQ9UEU5 116 aa12.82□□□□□ -0.36
CLN3-219ENST00000565778 REG3GQ6UW15 175 aa12.81□□□□□ -0.36
CLN3-219ENST00000565778 C2orf82Q6UX34 121 aa12.81□□□□□ -0.36
CLN3-219ENST00000565778 PACRGQ96M98 296 aaPredicted RBP12.81□□□□□ -0.36
CLN3-219ENST00000565778 PRSS2P07478 247 aa12.8□□□□□ -0.36
CLN3-219ENST00000565778 COMMD7Q86VX2 200 aa12.8□□□□□ -0.36
CLN3-219ENST00000565778 TOMM6Q96B49 74 aa12.8□□□□□ -0.36
CLN3-219ENST00000565778 GNB1LQ9BYB4 327 aa12.8□□□□□ -0.36
CLN3-219ENST00000565778 TOMM7Q9P0U1 55 aa12.8□□□□□ -0.36
CLN3-219ENST00000565778 PSORS1C2Q9UIG4 136 aa12.8□□□□□ -0.36
CLN3-219ENST00000565778 TRBV30A0A0K0K1B3 111 aa12.79□□□□□ -0.36
CLN3-219ENST00000565778 SEC11AP67812 179 aa12.79□□□□□ -0.36
CLN3-219ENST00000565778 C6orf226Q5I0X4 101 aa12.79□□□□□ -0.36
CLN3-219ENST00000565778 FAM168BA1KXE4 195 aa12.78□□□□□ -0.36
CLN3-219ENST00000565778 FAM19A3Q7Z5A8 133 aa12.78□□□□□ -0.36
CLN3-219ENST00000565778 SCGB3A1Q96QR1 104 aa12.78□□□□□ -0.36
CLN3-219ENST00000565778 TIMM17AQ99595 171 aa12.78□□□□□ -0.36
CLN3-219ENST00000565778 CKS1BP61024 79 aa12.77□□□□□ -0.37
CLN3-219ENST00000565778 HERVK_113P63121 156 aa12.77□□□□□ -0.37
CLN3-219ENST00000565778 C1orf137Q5JT78 98 aa12.77□□□□□ -0.37
CLN3-219ENST00000565778 ERASQ7Z444 233 aa12.77□□□□□ -0.37
CLN3-219ENST00000565778 FAM19A5Q7Z5A7 132 aaPredicted RBP12.77□□□□□ -0.37
CLN3-219ENST00000565778 GEMIN7Q9H840 131 aaKnown RBP12.77□□□□□ -0.37
CLN3-219ENST00000565778 COX19Q49B96 90 aa12.76□□□□□ -0.37
CLN3-219ENST00000565778 ALKBH7Q9BT30 221 aaPredicted RBP12.76□□□□□ -0.37
CLN3-219ENST00000565778 NDUFC2-KCTD14E9PQ53 114 aa12.75□□□□□ -0.37
CLN3-219ENST00000565778 RPS10P5Q9NQ39 176 aa12.75□□□□□ -0.37
CLN3-219ENST00000565778 CDKN2A-AS1Q9UH64 79 aa12.75□□□□□ -0.37
CLN3-219ENST00000565778 FABP9Q0Z7S8 132 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms