RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CKS2P33552 79 aa10.23□□□□□ -0.77
CLN3-211ENST00000564091 RPL23P62829 140 aaKnown RBP10.23□□□□□ -0.77
CLN3-211ENST00000564091 TMEM241Q24JQ0 296 aa10.23□□□□□ -0.77
CLN3-211ENST00000564091 UNQ6190/PRO20217Q6UXQ8 127 aa10.23□□□□□ -0.77
CLN3-211ENST00000564091 DIRC1Q969H9 104 aa10.23□□□□□ -0.77
CLN3-211ENST00000564091 IMMP2LQ96T52 175 aa10.23□□□□□ -0.77
CLN3-211ENST00000564091 LINC00862A6NCI5 91 aa10.22□□□□□ -0.77
CLN3-211ENST00000564091 NDUFA1O15239 70 aa10.22□□□□□ -0.77
CLN3-211ENST00000564091 TNFRSF6BO95407 300 aa10.22□□□□□ -0.77
CLN3-211ENST00000564091 FAM74A3Q4VXF1 159 aa10.22□□□□□ -0.77
CLN3-211ENST00000564091 C6orf48Q9UBA6 75 aa10.22□□□□□ -0.77
CLN3-211ENST00000564091 MUC2Q02817 5179 aa10.22□□□□□ -0.77
CLN3-211ENST00000564091 hCG_2014768A0A024R1R8 64 aa10.21□□□□□ -0.77
CLN3-211ENST00000564091 SMIM27A0A1W2PRY6 76 aa10.21□□□□□ -0.77
CLN3-211ENST00000564091 RPL32P62910 135 aaKnown RBP10.21□□□□□ -0.77
CLN3-211ENST00000564091 ADIRFQ15847 76 aa10.21□□□□□ -0.77
CLN3-211ENST00000564091 GAGE2EQ4V326 116 aa10.21□□□□□ -0.77
CLN3-211ENST00000564091 FAM19A5Q7Z5A7 132 aaPredicted RBP10.21□□□□□ -0.77
CLN3-211ENST00000564091 GAGE2DQ9UEU5 116 aa10.21□□□□□ -0.77
CLN3-211ENST00000564091 IFITM10A6NMD0 228 aa10.2□□□□□ -0.78
CLN3-211ENST00000564091 F8WDY8 70 aa10.2□□□□□ -0.78
CLN3-211ENST00000564091 H0Y9J4 135 aa10.2□□□□□ -0.78
CLN3-211ENST00000564091 TCAPO15273 167 aa10.2□□□□□ -0.78
CLN3-211ENST00000564091 SMIM2Q9BVW6 85 aa10.2□□□□□ -0.78
CLN3-211ENST00000564091 SPANXA1Q9NS26 97 aa10.2□□□□□ -0.78
CLN3-211ENST00000564091 C9JQL5 133 aa10.19□□□□□ -0.78
CLN3-211ENST00000564091 D6R8Y8 96 aa10.19□□□□□ -0.78
CLN3-211ENST00000564091 TLX1NBP0CAT3 122 aa10.19□□□□□ -0.78
CLN3-211ENST00000564091 HBBP68871 147 aa10.19□□□□□ -0.78
CLN3-211ENST00000564091 MRPS36P82909 103 aaKnown RBP10.19□□□□□ -0.78
CLN3-211ENST00000564091 KRTAP7-1Q8IUC3 87 aa10.19□□□□□ -0.78
CLN3-211ENST00000564091 NPYP01303 97 aa10.18□□□□□ -0.78
CLN3-211ENST00000564091 MRPL54Q6P161 138 aaKnown RBP10.18□□□□□ -0.78
CLN3-211ENST00000564091 KIAA0087Q14695 138 aa10.17□□□□□ -0.78
CLN3-211ENST00000564091 SMDT1Q9H4I9 107 aa10.17□□□□□ -0.78
CLN3-211ENST00000564091 NAT8Q9UHE5 227 aa10.17□□□□□ -0.78
CLN3-211ENST00000564091 A0A1B0GW15 77 aa10.16□□□□□ -0.78
CLN3-211ENST00000564091 KRTAP1-4P0C5Y4 121 aa10.16□□□□□ -0.78
CLN3-211ENST00000564091 TGIF2-C20orf24A0A0A6YYL0 155 aa10.15□□□□□ -0.78
CLN3-211ENST00000564091 UBE2BP63146 152 aa10.15□□□□□ -0.78
CLN3-211ENST00000564091 SRSF3P84103 164 aaKnown RBP10.15□□□□□ -0.78
CLN3-211ENST00000564091 F8W036 122 aa10.14□□□□□ -0.79
CLN3-211ENST00000564091 M0QXV9 152 aa10.14□□□□□ -0.79
CLN3-211ENST00000564091 LINC00242Q5T6M2 205 aa10.14□□□□□ -0.79
CLN3-211ENST00000564091 C2orf82Q6UX34 121 aa10.14□□□□□ -0.79
CLN3-211ENST00000564091 IGLV1-50A0A075B6I6 118 aa10.13□□□□□ -0.79
CLN3-211ENST00000564091 A0A1B0GXF2 115 aa10.13□□□□□ -0.79
CLN3-211ENST00000564091 IFI27P40305 119 aaPredicted RBP10.13□□□□□ -0.79
CLN3-211ENST00000564091 IGLV4-3A0A075B6K6 122 aa10.12□□□□□ -0.79
CLN3-211ENST00000564091 S100A8P05109 93 aa10.12□□□□□ -0.79
CLN3-211ENST00000564091 RAB5AP20339 215 aa10.12□□□□□ -0.79
CLN3-211ENST00000564091 C9orf129Q5T035 196 aaKnown RBP10.12□□□□□ -0.79
CLN3-211ENST00000564091 PPBPP02775 128 aa10.11□□□□□ -0.79
CLN3-211ENST00000564091 TMEM136Q6ZRR5 245 aa10.11□□□□□ -0.79
CLN3-211ENST00000564091 TRBV30A0A0K0K1B3 111 aa10.1□□□□□ -0.79
CLN3-211ENST00000564091 NDUFC2-KCTD14E9PQ53 114 aa10.1□□□□□ -0.79
CLN3-211ENST00000564091 UBE2D1P51668 147 aa10.1□□□□□ -0.79
CLN3-211ENST00000564091 ORMDL3Q8N138 153 aa10.1□□□□□ -0.79
CLN3-211ENST00000564091 PACRGQ96M98 296 aaPredicted RBP10.1□□□□□ -0.79
CLN3-211ENST00000564091 PYGO1Q9Y3Y4 419 aa10.1□□□□□ -0.79
CLN3-211ENST00000564091 PEA15Q15121 130 aa10.09□□□□□ -0.79
CLN3-211ENST00000564091 PRR4Q16378 134 aa10.09□□□□□ -0.79
CLN3-211ENST00000564091 ZC2HC1BQ5TFG8 222 aa10.09□□□□□ -0.79
CLN3-211ENST00000564091 TMEM141Q96I45 108 aa10.09□□□□□ -0.79
CLN3-211ENST00000564091 PRELID3AQ96N28 172 aa10.09□□□□□ -0.79
CLN3-211ENST00000564091 LOC389332A0A1B0GUA5 103 aa10.08□□□□□ -0.8
CLN3-211ENST00000564091 TEX43Q6ZNM6 134 aa10.07□□□□□ -0.8
CLN3-211ENST00000564091 LINC00469Q8N7U9 141 aa10.06□□□□□ -0.8
CLN3-211ENST00000564091 RPL13AP40429 203 aaKnown RBP10.05□□□□□ -0.8
CLN3-211ENST00000564091 TOMM7Q9P0U1 55 aa10.05□□□□□ -0.8
CLN3-211ENST00000564091 ZNF861PO60384 105 aa10.04□□□□□ -0.8
CLN3-211ENST00000564091 ATP5L2Q7Z4Y8 100 aa10.04□□□□□ -0.8
CLN3-211ENST00000564091 LINC01561Q8N1V8 128 aa10.04□□□□□ -0.8
CLN3-211ENST00000564091 C2orf88Q9BSF0 95 aa10.04□□□□□ -0.8
CLN3-211ENST00000564091 C22orf24Q9Y442 160 aa10.04□□□□□ -0.8
CLN3-211ENST00000564091 PRSS2P07478 247 aa10.03□□□□□ -0.8
CLN3-211ENST00000564091 C2orf66Q6UXQ4 117 aa10.03□□□□□ -0.8
CLN3-211ENST00000564091 LINC00173Q6ZV60 143 aa10.03□□□□□ -0.8
CLN3-211ENST00000564091 VCX2Q9H322 139 aa10.03□□□□□ -0.8
CLN3-211ENST00000564091 XAGE1AQ9HD64 81 aa10.03□□□□□ -0.8
CLN3-211ENST00000564091 CARHSP1Q9Y2V2 147 aaKnown RBP10.03□□□□□ -0.8
CLN3-211ENST00000564091 PRSS47A8MTI9 375 aa10.02□□□□□ -0.81
CLN3-211ENST00000564091 CKS1BP61024 79 aa10.02□□□□□ -0.81
CLN3-211ENST00000564091 C6orf226Q5I0X4 101 aa10.02□□□□□ -0.81
CLN3-211ENST00000564091 Q6ZN92 141 aa10.02□□□□□ -0.81
CLN3-211ENST00000564091 AMELXQ99217 191 aa10.02□□□□□ -0.81
CLN3-211ENST00000564091 MAP1LC3AQ9H492 121 aa10.02□□□□□ -0.81
CLN3-211ENST00000564091 CYSLTR1Q9Y271 337 aa10.02□□□□□ -0.81
CLN3-211ENST00000564091 TSPAN13O95857 204 aa10.01□□□□□ -0.81
CLN3-211ENST00000564091 Q8N8P6 123 aa10.01□□□□□ -0.81
CLN3-211ENST00000564091 CTDSP1Q9GZU7 261 aa10.01□□□□□ -0.81
CLN3-211ENST00000564091 FAT4Q6V0I7 4981 aa10□□□□□ -0.81
CLN3-211ENST00000564091 ALKBH7Q9BT30 221 aaPredicted RBP10□□□□□ -0.81
CLN3-211ENST00000564091 LAMTOR2Q9Y2Q5 125 aa10□□□□□ -0.81
CLN3-211ENST00000564091 A0A1B0GVG6 124 aa9.99□□□□□ -0.81
CLN3-211ENST00000564091 IGIPA6NJ69 53 aa9.99□□□□□ -0.81
CLN3-211ENST00000564091 LBHQ53QV2 105 aaPredicted RBP9.99□□□□□ -0.81
CLN3-211ENST00000564091 Q8IZM0 81 aa9.99□□□□□ -0.81
CLN3-211ENST00000564091 NUPR1O60356 82 aa9.98□□□□□ -0.81
CLN3-211ENST00000564091 ORMDL2Q53FV1 153 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms