RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 KIAA1644Q3SXP7 199 aa8.58□□□□□ -1.04
CLK3-213ENST00000563842 Q6ZN92 141 aa8.58□□□□□ -1.04
CLK3-213ENST00000563842 C5orf38Q86SI9 138 aa8.58□□□□□ -1.04
CLK3-213ENST00000563842 SVBPQ8N300 66 aa8.58□□□□□ -1.04
CLK3-213ENST00000563842 CARD19Q96LW7 228 aa8.58□□□□□ -1.04
CLK3-213ENST00000563842 OPRPNQ99935 248 aaPredicted RBP8.58□□□□□ -1.04
CLK3-213ENST00000563842 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.58□□□□□ -1.04
CLK3-213ENST00000563842 VPS13BQ7Z7G8 4022 aa8.58□□□□□ -1.04
CLK3-213ENST00000563842 IGLV4-3A0A075B6K6 122 aa8.57□□□□□ -1.04
CLK3-213ENST00000563842 LINC01549A6NIU2 74 aa8.57□□□□□ -1.04
CLK3-213ENST00000563842 COX6A2Q02221 97 aa8.57□□□□□ -1.04
CLK3-213ENST00000563842 SYCNQ0VAF6 134 aa8.57□□□□□ -1.04
CLK3-213ENST00000563842 PAPPA-AS1Q5QFB9 102 aa8.57□□□□□ -1.04
CLK3-213ENST00000563842 TEX43Q6ZNM6 134 aa8.57□□□□□ -1.04
CLK3-213ENST00000563842 PRSS3P2Q8NHM4 247 aa8.57□□□□□ -1.04
CLK3-213ENST00000563842 FAM104AQ969W3 186 aa8.57□□□□□ -1.04
CLK3-213ENST00000563842 C2orf88Q9BSF0 95 aa8.57□□□□□ -1.04
CLK3-213ENST00000563842 SRRM2Q9UQ35 2752 aaKnown RBP8.56□□□□□ -1.04
CLK3-213ENST00000563842 TGIF2-C20orf24A0A0A6YYL0 155 aa8.56□□□□□ -1.04
CLK3-213ENST00000563842 FABP9Q0Z7S8 132 aa8.56□□□□□ -1.04
CLK3-213ENST00000563842 OR10D4PQ8NGN7 298 aa8.56□□□□□ -1.04
CLK3-213ENST00000563842 C2orf48Q96LS8 159 aa8.56□□□□□ -1.04
CLK3-213ENST00000563842 VCX2Q9H322 139 aa8.56□□□□□ -1.04
CLK3-213ENST00000563842 LINC00474Q9P2X8 69 aa8.56□□□□□ -1.04
CLK3-213ENST00000563842 FAT1Q14517 4588 aa8.56□□□□□ -1.04
CLK3-213ENST00000563842 IGLV4-69A0A075B6H9 119 aa8.55□□□□□ -1.04
CLK3-213ENST00000563842 IGHV3OR16-9A0A0B4J2B5 98 aa8.55□□□□□ -1.04
CLK3-213ENST00000563842 F8WDY8 70 aa8.55□□□□□ -1.04
CLK3-213ENST00000563842 SPACA4Q8TDM5 124 aa8.55□□□□□ -1.04
CLK3-213ENST00000563842 LINC00526Q96FQ7 95 aa8.55□□□□□ -1.04
CLK3-213ENST00000563842 CAMK2N2Q96S95 79 aa8.55□□□□□ -1.04
CLK3-213ENST00000563842 ALKBH7Q9BT30 221 aaPredicted RBP8.55□□□□□ -1.04
CLK3-213ENST00000563842 MRPL18Q9H0U6 180 aaKnown RBP8.55□□□□□ -1.04
CLK3-213ENST00000563842 PANO1I0J062 215 aa8.54□□□□□ -1.04
CLK3-213ENST00000563842 FLG2Q5D862 2391 aaPredicted RBP8.54□□□□□ -1.04
CLK3-213ENST00000563842 A0A087WYN8 130 aa8.53□□□□□ -1.04
CLK3-213ENST00000563842 IGIPA6NJ69 53 aa8.53□□□□□ -1.04
CLK3-213ENST00000563842 CHTF8P0CG12 524 aa8.53□□□□□ -1.04
CLK3-213ENST00000563842 SPAG11BQ08648 103 aa8.53□□□□□ -1.04
CLK3-213ENST00000563842 ORAOV1Q8WV07 137 aa8.53□□□□□ -1.04
CLK3-213ENST00000563842 TOMM6Q96B49 74 aa8.53□□□□□ -1.04
CLK3-213ENST00000563842 AMELXQ99217 191 aa8.53□□□□□ -1.04
CLK3-213ENST00000563842 TIMM17AQ99595 171 aa8.53□□□□□ -1.04
CLK3-213ENST00000563842 SMCO4Q9NRQ5 59 aa8.53□□□□□ -1.04
CLK3-213ENST00000563842 A0A087WZ39 114 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 IGKV2-24A0A0C4DH68 120 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 UBE2D1P51668 147 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 RPL37AP61513 92 aaKnown RBP8.52□□□□□ -1.05
CLK3-213ENST00000563842 SEC11AP67812 179 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 MAJINQ3KP22 176 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 LINC00242Q5T6M2 205 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 FA2HQ7L5A8 372 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 LINC01561Q8N1V8 128 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 PLAC8Q9NZF1 115 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 TRAPPC1Q9Y5R8 145 aa8.52□□□□□ -1.05
CLK3-213ENST00000563842 LOC107984640A0A0U1RRK4 108 aa8.51□□□□□ -1.05
CLK3-213ENST00000563842 LINC01546A6NGU7 62 aa8.51□□□□□ -1.05
CLK3-213ENST00000563842 RNF151Q2KHN1 245 aa8.51□□□□□ -1.05
CLK3-213ENST00000563842 Q6ZRU5 148 aa8.51□□□□□ -1.05
CLK3-213ENST00000563842 ERASQ7Z444 233 aa8.51□□□□□ -1.05
CLK3-213ENST00000563842 SCGB3A1Q96QR1 104 aa8.51□□□□□ -1.05
CLK3-213ENST00000563842 A0A096LNI7 61 aa8.5□□□□□ -1.05
CLK3-213ENST00000563842 STPG4Q8N801 248 aa8.5□□□□□ -1.05
CLK3-213ENST00000563842 C7orf33Q8WU49 177 aa8.5□□□□□ -1.05
CLK3-213ENST00000563842 NDUFA1O15239 70 aa8.49□□□□□ -1.05
CLK3-213ENST00000563842 HERVK_113P63121 156 aa8.49□□□□□ -1.05
CLK3-213ENST00000563842 LINC00173Q6ZV60 143 aa8.49□□□□□ -1.05
CLK3-213ENST00000563842 FAM19A3Q7Z5A8 133 aa8.49□□□□□ -1.05
CLK3-213ENST00000563842 MRPL35Q9NZE8 188 aaKnown RBP8.49□□□□□ -1.05
CLK3-213ENST00000563842 PTTG1IPP53801 180 aa8.47□□□□□ -1.05
CLK3-213ENST00000563842 KRTAP10-4P60372 401 aaPredicted RBP8.47□□□□□ -1.05
CLK3-213ENST00000563842 GAGE2BQ13066 116 aa8.47□□□□□ -1.05
CLK3-213ENST00000563842 ZC2HC1BQ5TFG8 222 aa8.47□□□□□ -1.05
CLK3-213ENST00000563842 GEMIN7Q9H840 131 aaKnown RBP8.47□□□□□ -1.05
CLK3-213ENST00000563842 PRSS2P07478 247 aa8.46□□□□□ -1.06
CLK3-213ENST00000563842 RAB5BP61020 215 aa8.46□□□□□ -1.06
CLK3-213ENST00000563842 PACRGQ96M98 296 aaPredicted RBP8.46□□□□□ -1.06
CLK3-213ENST00000563842 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.45□□□□□ -1.06
CLK3-213ENST00000563842 LINC00614P0C842 121 aa8.45□□□□□ -1.06
CLK3-213ENST00000563842 RPL18AQ02543 176 aaKnown RBP8.45□□□□□ -1.06
CLK3-213ENST00000563842 C18orf32Q8TCD1 76 aa8.45□□□□□ -1.06
CLK3-213ENST00000563842 TRBV30A0A0K0K1B3 111 aa8.44□□□□□ -1.06
CLK3-213ENST00000563842 KIAA0087Q14695 138 aa8.44□□□□□ -1.06
CLK3-213ENST00000563842 UNQ6190/PRO20217Q6UXQ8 127 aa8.44□□□□□ -1.06
CLK3-213ENST00000563842 TINCRA0A1B0GVN0 87 aa8.43□□□□□ -1.06
CLK3-213ENST00000563842 TLX1NBP0CAT3 122 aa8.43□□□□□ -1.06
CLK3-213ENST00000563842 PMVKQ15126 192 aa8.43□□□□□ -1.06
CLK3-213ENST00000563842 C6orf226Q5I0X4 101 aa8.43□□□□□ -1.06
CLK3-213ENST00000563842 A0A0J9YXV3 536 aa8.42□□□□□ -1.06
CLK3-213ENST00000563842 J3QL48 77 aa8.42□□□□□ -1.06
CLK3-213ENST00000563842 HBDP02042 147 aa8.42□□□□□ -1.06
CLK3-213ENST00000563842 CKS1BP61024 79 aa8.42□□□□□ -1.06
CLK3-213ENST00000563842 Q8IZM0 81 aa8.42□□□□□ -1.06
CLK3-213ENST00000563842 YPEL4Q96NS1 127 aa8.42□□□□□ -1.06
CLK3-213ENST00000563842 CST9LQ9H4G1 147 aa8.42□□□□□ -1.06
CLK3-213ENST00000563842 TOMM7Q9P0U1 55 aa8.42□□□□□ -1.06
CLK3-213ENST00000563842 CDKN2A-AS1Q9UH64 79 aa8.42□□□□□ -1.06
CLK3-213ENST00000563842 KRTAP29-1A8MX34 341 aaPredicted RBP8.41□□□□□ -1.06
CLK3-213ENST00000563842 C10orf25Q5T742 122 aa8.41□□□□□ -1.06
CLK3-213ENST00000563842 LINC00469Q8N7U9 141 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms