RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 C7orf33Q8WU49 177 aa6.37□□□□□ -1.39
SF3B3-204ENST00000563739 TMEM18Q96B42 140 aa6.37□□□□□ -1.39
SF3B3-204ENST00000563739 PACRGQ96M98 296 aaPredicted RBP6.37□□□□□ -1.39
SF3B3-204ENST00000563739 ALKBH7Q9BT30 221 aaPredicted RBP6.37□□□□□ -1.39
SF3B3-204ENST00000563739 IQCJQ1A5X6 159 aa6.36□□□□□ -1.39
SF3B3-204ENST00000563739 C18orf32Q8TCD1 76 aa6.36□□□□□ -1.39
SF3B3-204ENST00000563739 IGKV2-24A0A0C4DH68 120 aa6.35□□□□□ -1.39
SF3B3-204ENST00000563739 MAJINQ3KP22 176 aa6.35□□□□□ -1.39
SF3B3-204ENST00000563739 PYY3Q5JQD4 70 aa6.35□□□□□ -1.39
SF3B3-204ENST00000563739 AMN1Q8IY45 258 aa6.35□□□□□ -1.39
SF3B3-204ENST00000563739 STPG4Q8N801 248 aa6.35□□□□□ -1.39
SF3B3-204ENST00000563739 NIT2Q9NQR4 276 aa6.35□□□□□ -1.39
SF3B3-204ENST00000563739 JOSD1Q15040 202 aaPredicted RBP6.34□□□□□ -1.39
SF3B3-204ENST00000563739 REG3GQ6UW15 175 aa6.34□□□□□ -1.39
SF3B3-204ENST00000563739 RPL39LQ96EH5 51 aaKnown RBP6.34□□□□□ -1.39
SF3B3-204ENST00000563739 MRAP2Q96G30 205 aa6.34□□□□□ -1.39
SF3B3-204ENST00000563739 NCR2O95944 276 aa6.33□□□□□ -1.4
SF3B3-204ENST00000563739 RAB4AP20338 218 aa6.33□□□□□ -1.4
SF3B3-204ENST00000563739 HIGD2BQ4VC39 106 aa6.33□□□□□ -1.4
SF3B3-204ENST00000563739 TMEM97Q5BJF2 176 aa6.33□□□□□ -1.4
SF3B3-204ENST00000563739 FAM104BQ5XKR9 115 aa6.33□□□□□ -1.4
SF3B3-204ENST00000563739 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.32□□□□□ -1.4
SF3B3-204ENST00000563739 TRBV6-5A0A0K0K1A5 114 aa6.32□□□□□ -1.4
SF3B3-204ENST00000563739 SMKR1H3BMG3 65 aa6.32□□□□□ -1.4
SF3B3-204ENST00000563739 PKIAP61925 76 aa6.32□□□□□ -1.4
SF3B3-204ENST00000563739 MRPL51Q4U2R6 128 aaKnown RBP6.32□□□□□ -1.4
SF3B3-204ENST00000563739 TRBV25-1A0A075B6N4 114 aa6.31□□□□□ -1.4
SF3B3-204ENST00000563739 GVQW2A0A096LPI5 108 aaPredicted RBP6.31□□□□□ -1.4
SF3B3-204ENST00000563739 TRAV8-4A0A0B4J246 113 aa6.31□□□□□ -1.4
SF3B3-204ENST00000563739 A0A1B0GUV1 79 aa6.31□□□□□ -1.4
SF3B3-204ENST00000563739 SDHAF1A6NFY7 115 aa6.31□□□□□ -1.4
SF3B3-204ENST00000563739 NRACQ8N912 160 aa6.31□□□□□ -1.4
SF3B3-204ENST00000563739 CHCHD1Q96BP2 118 aaKnown RBP6.31□□□□□ -1.4
SF3B3-204ENST00000563739 DPH3Q96FX2 82 aa6.31□□□□□ -1.4
SF3B3-204ENST00000563739 URB1-AS1Q96HZ7 61 aa6.31□□□□□ -1.4
SF3B3-204ENST00000563739 AP5S1Q9NUS5 200 aa6.31□□□□□ -1.4
SF3B3-204ENST00000563739 IGHV1-24A0A0C4DH33 117 aa6.3□□□□□ -1.4
SF3B3-204ENST00000563739 GAGE12HA6NDE8 117 aa6.3□□□□□ -1.4
SF3B3-204ENST00000563739 HSBP1O75506 76 aa6.3□□□□□ -1.4
SF3B3-204ENST00000563739 PPP1R17O96001 155 aa6.3□□□□□ -1.4
SF3B3-204ENST00000563739 LINC00614P0C842 121 aa6.3□□□□□ -1.4
SF3B3-204ENST00000563739 AMTP48728 403 aa6.3□□□□□ -1.4
SF3B3-204ENST00000563739 COTL1Q14019 142 aa6.3□□□□□ -1.4
SF3B3-204ENST00000563739 RNASEKQ6P5S7 137 aaKnown RBP6.3□□□□□ -1.4
SF3B3-204ENST00000563739 ORMDL3Q8N138 153 aa6.3□□□□□ -1.4
SF3B3-204ENST00000563739 ST20Q9HBF5 79 aa6.3□□□□□ -1.4
SF3B3-204ENST00000563739 KRTAP9-7A8MTY7 169 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 D6R8Y8 96 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 PPBPP02775 128 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 PMCHP20382 165 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 CKS2P33552 79 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 S100A12P80511 92 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 FAM19A2Q8N3H0 131 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 PRR26Q8N8Z3 221 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 PRELID3AQ96N28 172 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 TMEM243Q9BU79 118 aa6.29□□□□□ -1.4
SF3B3-204ENST00000563739 TRBV27A0A0K0K1C4 114 aa6.28□□□□□ -1.4
SF3B3-204ENST00000563739 PCP4L1A6NKN8 68 aa6.28□□□□□ -1.4
SF3B3-204ENST00000563739 I3L3M4 83 aa6.28□□□□□ -1.4
SF3B3-204ENST00000563739 TSHBP01222 138 aa6.28□□□□□ -1.4
SF3B3-204ENST00000563739 POLR2KP53803 58 aaKnown RBP6.28□□□□□ -1.4
SF3B3-204ENST00000563739 SUMO2P61956 95 aaKnown RBP6.28□□□□□ -1.4
SF3B3-204ENST00000563739 Q6ZRP5 223 aa6.28□□□□□ -1.4
SF3B3-204ENST00000563739 LINC00526Q96FQ7 95 aa6.28□□□□□ -1.4
SF3B3-204ENST00000563739 LAMTOR2Q9Y2Q5 125 aa6.28□□□□□ -1.4
SF3B3-204ENST00000563739 A0A1W2PNN7 141 aa6.27□□□□□ -1.41
SF3B3-204ENST00000563739 TNFRSF6BO95407 300 aa6.27□□□□□ -1.41
SF3B3-204ENST00000563739 SCGB1D1O95968 90 aa6.27□□□□□ -1.41
SF3B3-204ENST00000563739 NPYP01303 97 aa6.27□□□□□ -1.41
SF3B3-204ENST00000563739 KRTAP1-4P0C5Y4 121 aa6.27□□□□□ -1.41
SF3B3-204ENST00000563739 FOXI1Q12951 378 aa6.27□□□□□ -1.41
SF3B3-204ENST00000563739 KRTAP11-1Q8IUC1 163 aa6.27□□□□□ -1.41
SF3B3-204ENST00000563739 C20orf78Q9BR46 151 aa6.27□□□□□ -1.41
SF3B3-204ENST00000563739 PRSS47A8MTI9 375 aa6.26□□□□□ -1.41
SF3B3-204ENST00000563739 UBE2L6O14933 153 aa6.26□□□□□ -1.41
SF3B3-204ENST00000563739 C3orf79P0CE67 100 aa6.26□□□□□ -1.41
SF3B3-204ENST00000563739 IFI27P40305 119 aaPredicted RBP6.26□□□□□ -1.41
SF3B3-204ENST00000563739 RPL32P62910 135 aaKnown RBP6.26□□□□□ -1.41
SF3B3-204ENST00000563739 FA2HQ7L5A8 372 aa6.26□□□□□ -1.41
SF3B3-204ENST00000563739 SMIM2Q9BVW6 85 aa6.26□□□□□ -1.41
SF3B3-204ENST00000563739 PSORS1C2Q9UIG4 136 aa6.26□□□□□ -1.41
SF3B3-204ENST00000563739 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.25□□□□□ -1.41
SF3B3-204ENST00000563739 IGKV2-29A2NJV5 120 aaPredicted RBP6.25□□□□□ -1.41
SF3B3-204ENST00000563739 LINC01546A6NGU7 62 aa6.25□□□□□ -1.41
SF3B3-204ENST00000563739 VCYO14598 125 aa6.25□□□□□ -1.41
SF3B3-204ENST00000563739 KRTDAPP60985 99 aa6.25□□□□□ -1.41
SF3B3-204ENST00000563739 CHCHD10Q8WYQ3 142 aaPredicted RBP6.25□□□□□ -1.41
SF3B3-204ENST00000563739 KIR2DL4Q99706 377 aa6.25□□□□□ -1.41
SF3B3-204ENST00000563739 MAP1LC3AQ9H492 121 aa6.25□□□□□ -1.41
SF3B3-204ENST00000563739 LOC389332A0A1B0GUA5 103 aa6.24□□□□□ -1.41
SF3B3-204ENST00000563739 H7C423 109 aa6.24□□□□□ -1.41
SF3B3-204ENST00000563739 FCER1GP30273 86 aa6.24□□□□□ -1.41
SF3B3-204ENST00000563739 PMCHL1Q16048 86 aa6.24□□□□□ -1.41
SF3B3-204ENST00000563739 TEX43Q6ZNM6 134 aa6.24□□□□□ -1.41
SF3B3-204ENST00000563739 NXT2Q9NPJ8 142 aaKnown RBP6.24□□□□□ -1.41
SF3B3-204ENST00000563739 TCAPO15273 167 aa6.23□□□□□ -1.41
SF3B3-204ENST00000563739 LEPROTL1O95214 131 aa6.23□□□□□ -1.41
SF3B3-204ENST00000563739 FGF6P10767 208 aa6.23□□□□□ -1.41
SF3B3-204ENST00000563739 PTTG1IPP53801 180 aa6.23□□□□□ -1.41
SF3B3-204ENST00000563739 AMMECR1LQ6DCA0 310 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms