RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 MRPL35Q9NZE8 188 aaKnown RBP11.02□□□□□ -0.65
VPS4A-202ENST00000562754 CHTOPQ9Y3Y2 248 aaKnown RBP11.02□□□□□ -0.65
VPS4A-202ENST00000562754 CD164L2Q6UWJ8 174 aa11.01□□□□□ -0.65
VPS4A-202ENST00000562754 PMCHL2Q9BQD1 86 aa11.01□□□□□ -0.65
VPS4A-202ENST00000562754 TM2D2Q9BX73 214 aa11.01□□□□□ -0.65
VPS4A-202ENST00000562754 RYR2Q92736 4967 aa11□□□□□ -0.65
VPS4A-202ENST00000562754 IGHV3OR16-9A0A0B4J2B5 98 aa11□□□□□ -0.65
VPS4A-202ENST00000562754 TINCRA0A1B0GVN0 87 aa11□□□□□ -0.65
VPS4A-202ENST00000562754 C11orf86A6NJI1 115 aa11□□□□□ -0.65
VPS4A-202ENST00000562754 F8VRH5 84 aa11□□□□□ -0.65
VPS4A-202ENST00000562754 RTL8CO15255 209 aa11□□□□□ -0.65
VPS4A-202ENST00000562754 PET117Q6UWS5 81 aa11□□□□□ -0.65
VPS4A-202ENST00000562754 CHAC1Q9BUX1 264 aa11□□□□□ -0.65
VPS4A-202ENST00000562754 LINC01545Q5VT33 79 aa10.99□□□□□ -0.65
VPS4A-202ENST00000562754 GEMIN7Q9H840 131 aaKnown RBP10.99□□□□□ -0.65
VPS4A-202ENST00000562754 COX11Q9Y6N1 276 aa10.99□□□□□ -0.65
VPS4A-202ENST00000562754 DNAH2Q9P225 4427 aa10.98□□□□□ -0.65
VPS4A-202ENST00000562754 IGLV5-45A0A087WSX0 123 aa10.98□□□□□ -0.65
VPS4A-202ENST00000562754 HERVK_113P63121 156 aa10.98□□□□□ -0.65
VPS4A-202ENST00000562754 SEC11AP67812 179 aa10.98□□□□□ -0.65
VPS4A-202ENST00000562754 C5orf38Q86SI9 138 aa10.98□□□□□ -0.65
VPS4A-202ENST00000562754 OR10D4PQ8NGN7 298 aa10.98□□□□□ -0.65
VPS4A-202ENST00000562754 DNAH10Q8IVF4 4471 aa10.97□□□□□ -0.65
VPS4A-202ENST00000562754 PSCAO43653 123 aa10.97□□□□□ -0.65
VPS4A-202ENST00000562754 ZNF22P17026 224 aaPredicted RBP10.97□□□□□ -0.65
VPS4A-202ENST00000562754 WFDC2Q14508 124 aa10.97□□□□□ -0.65
VPS4A-202ENST00000562754 LINC00469Q8N7U9 141 aa10.97□□□□□ -0.65
VPS4A-202ENST00000562754 CDKN2A-AS1Q9UH64 79 aa10.97□□□□□ -0.65
VPS4A-202ENST00000562754 COX7A2LO14548 114 aa10.96□□□□□ -0.65
VPS4A-202ENST00000562754 A0A087WZ39 114 aa10.95□□□□□ -0.66
VPS4A-202ENST00000562754 LRCOL1A6NCL2 159 aa10.95□□□□□ -0.66
VPS4A-202ENST00000562754 DPM2O94777 84 aa10.95□□□□□ -0.66
VPS4A-202ENST00000562754 FRAS1Q86XX4 4008 aa10.94□□□□□ -0.66
VPS4A-202ENST00000562754 LECT2O14960 151 aa10.94□□□□□ -0.66
VPS4A-202ENST00000562754 C15orf56Q8N910 161 aa10.94□□□□□ -0.66
VPS4A-202ENST00000562754 USP17L23D6RBM5 183 aa10.93□□□□□ -0.66
VPS4A-202ENST00000562754 IGKCP01834 107 aa10.93□□□□□ -0.66
VPS4A-202ENST00000562754 PLNP26678 52 aa10.93□□□□□ -0.66
VPS4A-202ENST00000562754 DNAH17Q9UFH2 4485 aa10.93□□□□□ -0.66
VPS4A-202ENST00000562754 C20orf202A1L168 122 aa10.92□□□□□ -0.66
VPS4A-202ENST00000562754 SMIM1B2RUZ4 78 aa10.92□□□□□ -0.66
VPS4A-202ENST00000562754 SPINK8P0C7L1 97 aa10.92□□□□□ -0.66
VPS4A-202ENST00000562754 TNP2Q05952 138 aa10.92□□□□□ -0.66
VPS4A-202ENST00000562754 TMEM170BQ5T4T1 132 aa10.92□□□□□ -0.66
VPS4A-202ENST00000562754 LINC01561Q8N1V8 128 aa10.92□□□□□ -0.66
VPS4A-202ENST00000562754 A0A087WTM6 91 aa10.91□□□□□ -0.66
VPS4A-202ENST00000562754 MALP21145 153 aa10.91□□□□□ -0.66
VPS4A-202ENST00000562754 IGHV3-64A0A075B6Q5 118 aa10.9□□□□□ -0.66
VPS4A-202ENST00000562754 IGHV1-58A0A0C4DH39 117 aa10.9□□□□□ -0.66
VPS4A-202ENST00000562754 H3BRM9 83 aa10.9□□□□□ -0.66
VPS4A-202ENST00000562754 TMEM223A0PJW6 202 aa10.89□□□□□ -0.67
VPS4A-202ENST00000562754 HIGD2BQ4VC39 106 aa10.89□□□□□ -0.67
VPS4A-202ENST00000562754 ATOH7Q8N100 152 aa10.89□□□□□ -0.67
VPS4A-202ENST00000562754 ORAOV1Q8WV07 137 aa10.89□□□□□ -0.67
VPS4A-202ENST00000562754 GVQW2A0A096LPI5 108 aaPredicted RBP10.88□□□□□ -0.67
VPS4A-202ENST00000562754 APOMO95445 188 aa10.88□□□□□ -0.67
VPS4A-202ENST00000562754 IGLV5-39A0A0G2JS06 123 aa10.87□□□□□ -0.67
VPS4A-202ENST00000562754 CFAP161Q6P656 301 aa10.87□□□□□ -0.67
VPS4A-202ENST00000562754 LINC00526Q96FQ7 95 aa10.87□□□□□ -0.67
VPS4A-202ENST00000562754 FAT2Q9NYQ8 4349 aa10.86□□□□□ -0.67
VPS4A-202ENST00000562754 SCGB1D1O95968 90 aa10.86□□□□□ -0.67
VPS4A-202ENST00000562754 SPAG11BQ08648 103 aa10.86□□□□□ -0.67
VPS4A-202ENST00000562754 hDV102S1A0JD36 115 aa10.85□□□□□ -0.67
VPS4A-202ENST00000562754 AKR1D1P51857 326 aa10.85□□□□□ -0.67
VPS4A-202ENST00000562754 KIAA0087Q14695 138 aa10.85□□□□□ -0.67
VPS4A-202ENST00000562754 JOSD1Q15040 202 aaPredicted RBP10.85□□□□□ -0.67
VPS4A-202ENST00000562754 LINC00336Q6ZUF6 198 aa10.85□□□□□ -0.67
VPS4A-202ENST00000562754 Q8N814 137 aa10.85□□□□□ -0.67
VPS4A-202ENST00000562754 RYR3Q15413 4870 aa10.84□□□□□ -0.67
VPS4A-202ENST00000562754 LOC105371267A0A1B0GV96 52 aa10.84□□□□□ -0.67
VPS4A-202ENST00000562754 C14orf177Q52M58 125 aa10.84□□□□□ -0.67
VPS4A-202ENST00000562754 PYY3Q5JQD4 70 aa10.84□□□□□ -0.67
VPS4A-202ENST00000562754 STPG4Q8N801 248 aa10.84□□□□□ -0.67
VPS4A-202ENST00000562754 TOMM7Q9P0U1 55 aa10.84□□□□□ -0.67
VPS4A-202ENST00000562754 Q8IZM0 81 aa10.83□□□□□ -0.68
VPS4A-202ENST00000562754 COX7B2Q8TF08 81 aa10.83□□□□□ -0.68
VPS4A-202ENST00000562754 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-202ENST00000562754 ZNF561-AS1K7EIQ3 104 aa10.82□□□□□ -0.68
VPS4A-202ENST00000562754 SLPIP03973 132 aa10.82□□□□□ -0.68
VPS4A-202ENST00000562754 TSPEAR-AS2P59090 65 aa10.82□□□□□ -0.68
VPS4A-202ENST00000562754 HERVK_113P61574 105 aa10.82□□□□□ -0.68
VPS4A-202ENST00000562754 MAJINQ3KP22 176 aa10.82□□□□□ -0.68
VPS4A-202ENST00000562754 NTN5Q8WTR8 489 aaPredicted RBP10.82□□□□□ -0.68
VPS4A-202ENST00000562754 ANKRD39Q53RE8 183 aa10.81□□□□□ -0.68
VPS4A-202ENST00000562754 E9PLD3 99 aa10.8□□□□□ -0.68
VPS4A-202ENST00000562754 EREGO14944 169 aa10.8□□□□□ -0.68
VPS4A-202ENST00000562754 LEPROTO15243 131 aa10.8□□□□□ -0.68
VPS4A-202ENST00000562754 PRSS2P07478 247 aa10.8□□□□□ -0.68
VPS4A-202ENST00000562754 FUSP35637 526 aaKnown RBP eCLIP10.8□□□□□ -0.68
VPS4A-202ENST00000562754 CDPF1Q6NVV7 123 aa10.8□□□□□ -0.68
VPS4A-202ENST00000562754 C2orf82Q6UX34 121 aa10.8□□□□□ -0.68
VPS4A-202ENST00000562754 C2orf48Q96LS8 159 aa10.8□□□□□ -0.68
VPS4A-202ENST00000562754 IGKV2D-26A0A0A0MRZ7 120 aa10.79□□□□□ -0.68
VPS4A-202ENST00000562754 A0A1B0GVY2 172 aa10.79□□□□□ -0.68
VPS4A-202ENST00000562754 DNAH11Q96DT5 4516 aa10.79□□□□□ -0.68
VPS4A-202ENST00000562754 KRTAP10-2P60368 255 aa10.78□□□□□ -0.68
VPS4A-202ENST00000562754 CNBPP62633 177 aaKnown RBP10.78□□□□□ -0.68
VPS4A-202ENST00000562754 C6orf226Q5I0X4 101 aa10.78□□□□□ -0.68
VPS4A-202ENST00000562754 C10orf25Q5T742 122 aa10.78□□□□□ -0.68
VPS4A-202ENST00000562754 Q6ZRU5 148 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms