RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 A0A1B0GW15 77 aa11.72□□□□□ -0.53
VPS35-202ENST00000561713 LINC00862A6NCI5 91 aa11.72□□□□□ -0.53
VPS35-202ENST00000561713 RPL32P62910 135 aaKnown RBP11.72□□□□□ -0.53
VPS35-202ENST00000561713 SPINK6Q6UWN8 80 aa11.72□□□□□ -0.53
VPS35-202ENST00000561713 Q6ZRP5 223 aa11.72□□□□□ -0.53
VPS35-202ENST00000561713 IFITM10A6NMD0 228 aa11.71□□□□□ -0.53
VPS35-202ENST00000561713 C9orf116Q5BN46 136 aaPredicted RBP11.71□□□□□ -0.53
VPS35-202ENST00000561713 REG3GQ6UW15 175 aa11.71□□□□□ -0.53
VPS35-202ENST00000561713 C2orf48Q96LS8 159 aa11.71□□□□□ -0.53
VPS35-202ENST00000561713 PHF5AQ7RTV0 110 aaKnown RBP11.7□□□□□ -0.54
VPS35-202ENST00000561713 SPANXA1Q9NS26 97 aa11.7□□□□□ -0.54
VPS35-202ENST00000561713 F8W036 122 aa11.69□□□□□ -0.54
VPS35-202ENST00000561713 S100A8P05109 93 aa11.68□□□□□ -0.54
VPS35-202ENST00000561713 SRSF9Q13242 221 aaKnown RBP eCLIP11.68□□□□□ -0.54
VPS35-202ENST00000561713 C10orf25Q5T742 122 aa11.68□□□□□ -0.54
VPS35-202ENST00000561713 OR10D4PQ8NGN7 298 aa11.68□□□□□ -0.54
VPS35-202ENST00000561713 IGHV3OR16-9A0A0B4J2B5 98 aa11.67□□□□□ -0.54
VPS35-202ENST00000561713 PSORS1C2Q9UIG4 136 aa11.67□□□□□ -0.54
VPS35-202ENST00000561713 FAM168BA1KXE4 195 aa11.66□□□□□ -0.54
VPS35-202ENST00000561713 MRPS36P82909 103 aaKnown RBP11.66□□□□□ -0.54
VPS35-202ENST00000561713 ORMDL3Q8N138 153 aa11.66□□□□□ -0.54
VPS35-202ENST00000561713 PRELID3AQ96N28 172 aa11.66□□□□□ -0.54
VPS35-202ENST00000561713 MT-ND6P03923 174 aa11.65□□□□□ -0.54
VPS35-202ENST00000561713 SMDT1Q9H4I9 107 aa11.65□□□□□ -0.54
VPS35-202ENST00000561713 UNQ6190/PRO20217Q6UXQ8 127 aa11.64□□□□□ -0.55
VPS35-202ENST00000561713 TMEM136Q6ZRR5 245 aa11.64□□□□□ -0.55
VPS35-202ENST00000561713 MRPL35Q9NZE8 188 aaKnown RBP11.64□□□□□ -0.55
VPS35-202ENST00000561713 C6orf48Q9UBA6 75 aa11.64□□□□□ -0.55
VPS35-202ENST00000561713 IGLV4-3A0A075B6K6 122 aa11.63□□□□□ -0.55
VPS35-202ENST00000561713 LOC389332A0A1B0GUA5 103 aa11.63□□□□□ -0.55
VPS35-202ENST00000561713 NDUFA1O15239 70 aa11.63□□□□□ -0.55
VPS35-202ENST00000561713 PPBPP02775 128 aa11.63□□□□□ -0.55
VPS35-202ENST00000561713 IFI27P40305 119 aaPredicted RBP11.63□□□□□ -0.55
VPS35-202ENST00000561713 C1orf137Q5JT78 98 aa11.63□□□□□ -0.55
VPS35-202ENST00000561713 ZC2HC1BQ5TFG8 222 aa11.63□□□□□ -0.55
VPS35-202ENST00000561713 ATP5L2Q7Z4Y8 100 aa11.63□□□□□ -0.55
VPS35-202ENST00000561713 FAM19A5Q7Z5A7 132 aaPredicted RBP11.63□□□□□ -0.55
VPS35-202ENST00000561713 TGIF2-C20orf24A0A0A6YYL0 155 aa11.62□□□□□ -0.55
VPS35-202ENST00000561713 RAB5AP20339 215 aa11.62□□□□□ -0.55
VPS35-202ENST00000561713 KRTAP11-1Q8IUC1 163 aa11.62□□□□□ -0.55
VPS35-202ENST00000561713 RNF151Q2KHN1 245 aa11.61□□□□□ -0.55
VPS35-202ENST00000561713 GAGE2EQ4V326 116 aa11.61□□□□□ -0.55
VPS35-202ENST00000561713 GAGE2DQ9UEU5 116 aa11.61□□□□□ -0.55
VPS35-202ENST00000561713 LINC00242Q5T6M2 205 aa11.6□□□□□ -0.55
VPS35-202ENST00000561713 C2orf82Q6UX34 121 aa11.59□□□□□ -0.55
VPS35-202ENST00000561713 TMEM141Q96I45 108 aa11.59□□□□□ -0.55
VPS35-202ENST00000561713 IMMP2LQ96T52 175 aa11.59□□□□□ -0.55
VPS35-202ENST00000561713 A0A087WZ39 114 aa11.58□□□□□ -0.56
VPS35-202ENST00000561713 KIAA0087Q14695 138 aa11.58□□□□□ -0.56
VPS35-202ENST00000561713 MAP1LC3AQ9H492 121 aa11.58□□□□□ -0.56
VPS35-202ENST00000561713 MUC2Q02817 5179 aa11.58□□□□□ -0.56
VPS35-202ENST00000561713 LINC00173Q6ZV60 143 aa11.57□□□□□ -0.56
VPS35-202ENST00000561713 KRTAP7-1Q8IUC3 87 aa11.57□□□□□ -0.56
VPS35-202ENST00000561713 PYGO1Q9Y3Y4 419 aa11.57□□□□□ -0.56
VPS35-202ENST00000561713 UBE2D1P51668 147 aa11.56□□□□□ -0.56
VPS35-202ENST00000561713 F8WDY8 70 aa11.55□□□□□ -0.56
VPS35-202ENST00000561713 TLX1NBP0CAT3 122 aa11.55□□□□□ -0.56
VPS35-202ENST00000561713 C2orf66Q6UXQ4 117 aa11.55□□□□□ -0.56
VPS35-202ENST00000561713 TEX43Q6ZNM6 134 aa11.55□□□□□ -0.56
VPS35-202ENST00000561713 M0QXV9 152 aa11.54□□□□□ -0.56
VPS35-202ENST00000561713 IGLV7-43P04211 117 aa11.54□□□□□ -0.56
VPS35-202ENST00000561713 Q8N8P6 123 aa11.54□□□□□ -0.56
VPS35-202ENST00000561713 CYSLTR1Q9Y271 337 aa11.54□□□□□ -0.56
VPS35-202ENST00000561713 C2orf88Q9BSF0 95 aa11.53□□□□□ -0.56
VPS35-202ENST00000561713 LAMTOR2Q9Y2Q5 125 aa11.53□□□□□ -0.56
VPS35-202ENST00000561713 MT-ND4LP03901 98 aa11.52□□□□□ -0.57
VPS35-202ENST00000561713 PNRC1Q12796 327 aaPredicted RBP11.52□□□□□ -0.57
VPS35-202ENST00000561713 C9orf129Q5T035 196 aaKnown RBP11.52□□□□□ -0.57
VPS35-202ENST00000561713 TOMM7Q9P0U1 55 aa11.52□□□□□ -0.57
VPS35-202ENST00000561713 PRSS47A8MTI9 375 aa11.51□□□□□ -0.57
VPS35-202ENST00000561713 Q6ZN92 141 aa11.51□□□□□ -0.57
VPS35-202ENST00000561713 PRR26Q8N8Z3 221 aa11.51□□□□□ -0.57
VPS35-202ENST00000561713 ANAPC16Q96DE5 110 aa11.51□□□□□ -0.57
VPS35-202ENST00000561713 TRBV30A0A0K0K1B3 111 aa11.5□□□□□ -0.57
VPS35-202ENST00000561713 UBE2BP63146 152 aa11.5□□□□□ -0.57
VPS35-202ENST00000561713 PACRGQ96M98 296 aaPredicted RBP11.5□□□□□ -0.57
VPS35-202ENST00000561713 AMELXQ99217 191 aa11.5□□□□□ -0.57
VPS35-202ENST00000561713 NDUFC2-KCTD14E9PQ53 114 aa11.49□□□□□ -0.57
VPS35-202ENST00000561713 LINC00469Q8N7U9 141 aa11.49□□□□□ -0.57
VPS35-202ENST00000561713 DIRC1Q969H9 104 aa11.49□□□□□ -0.57
VPS35-202ENST00000561713 H0Y9J4 135 aa11.48□□□□□ -0.57
VPS35-202ENST00000561713 ORMDL2Q53FV1 153 aa11.48□□□□□ -0.57
VPS35-202ENST00000561713 VCX2Q9H322 139 aa11.48□□□□□ -0.57
VPS35-202ENST00000561713 IGIPA6NJ69 53 aa11.47□□□□□ -0.57
VPS35-202ENST00000561713 PRSS2P07478 247 aa11.47□□□□□ -0.57
VPS35-202ENST00000561713 RAB14P61106 215 aa11.47□□□□□ -0.57
VPS35-202ENST00000561713 KIAA1644Q3SXP7 199 aa11.47□□□□□ -0.57
VPS35-202ENST00000561713 CTDSP1Q9GZU7 261 aa11.47□□□□□ -0.57
VPS35-202ENST00000561713 ADCYAP1P18509 176 aa11.46□□□□□ -0.57
VPS35-202ENST00000561713 XAGE1AQ9HD64 81 aa11.45□□□□□ -0.58
VPS35-202ENST00000561713 CKS1BP61024 79 aa11.44□□□□□ -0.58
VPS35-202ENST00000561713 LINC01561Q8N1V8 128 aa11.44□□□□□ -0.58
VPS35-202ENST00000561713 NXT2Q9NPJ8 142 aaKnown RBP11.44□□□□□ -0.58
VPS35-202ENST00000561713 CDKN2A-AS1Q9UH64 79 aa11.44□□□□□ -0.58
VPS35-202ENST00000561713 KRTAP1-4P0C5Y4 121 aa11.43□□□□□ -0.58
VPS35-202ENST00000561713 ALKBH7Q9BT30 221 aaPredicted RBP11.43□□□□□ -0.58
VPS35-202ENST00000561713 Q8IZM0 81 aa11.42□□□□□ -0.58
VPS35-202ENST00000561713 C6orf226Q5I0X4 101 aa11.41□□□□□ -0.58
VPS35-202ENST00000561713 FAM19A3Q7Z5A8 133 aa11.41□□□□□ -0.58
VPS35-202ENST00000561713 GEMIN7Q9H840 131 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms