RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 LINC01600Q96MT4 127 aa6.34□□□□□ -1.39
LDLR-214ENST00000560628 SPANXA1Q9NS26 97 aa6.34□□□□□ -1.39
LDLR-214ENST00000560628 HMCN2Q8NDA2 5059 aa6.33□□□□□ -1.4
LDLR-214ENST00000560628 IFITM10A6NMD0 228 aa6.33□□□□□ -1.4
LDLR-214ENST00000560628 PPBPP02775 128 aa6.33□□□□□ -1.4
LDLR-214ENST00000560628 RAB5AP20339 215 aa6.33□□□□□ -1.4
LDLR-214ENST00000560628 SRSF9Q13242 221 aaKnown RBP eCLIP6.33□□□□□ -1.4
LDLR-214ENST00000560628 C9orf116Q5BN46 136 aaPredicted RBP6.33□□□□□ -1.4
LDLR-214ENST00000560628 SPINK6Q6UWN8 80 aa6.33□□□□□ -1.4
LDLR-214ENST00000560628 ORMDL3Q8N138 153 aa6.33□□□□□ -1.4
LDLR-214ENST00000560628 ORAOV1Q8WV07 137 aa6.33□□□□□ -1.4
LDLR-214ENST00000560628 PRELID3AQ96N28 172 aa6.33□□□□□ -1.4
LDLR-214ENST00000560628 TMA7Q9Y2S6 64 aaKnown RBP6.33□□□□□ -1.4
LDLR-214ENST00000560628 IGHV3OR16-9A0A0B4J2B5 98 aa6.32□□□□□ -1.4
LDLR-214ENST00000560628 LOC389332A0A1B0GUA5 103 aa6.32□□□□□ -1.4
LDLR-214ENST00000560628 MRPS36P82909 103 aaKnown RBP6.32□□□□□ -1.4
LDLR-214ENST00000560628 C10orf25Q5T742 122 aa6.32□□□□□ -1.4
LDLR-214ENST00000560628 RNF151Q2KHN1 245 aa6.31□□□□□ -1.4
LDLR-214ENST00000560628 REG3GQ6UW15 175 aa6.31□□□□□ -1.4
LDLR-214ENST00000560628 UNQ6190/PRO20217Q6UXQ8 127 aa6.31□□□□□ -1.4
LDLR-214ENST00000560628 PHF5AQ7RTV0 110 aaKnown RBP6.31□□□□□ -1.4
LDLR-214ENST00000560628 ATP5L2Q7Z4Y8 100 aa6.31□□□□□ -1.4
LDLR-214ENST00000560628 OR10D4PQ8NGN7 298 aa6.31□□□□□ -1.4
LDLR-214ENST00000560628 MT-ND6P03923 174 aa6.3□□□□□ -1.4
LDLR-214ENST00000560628 IFI27P40305 119 aaPredicted RBP6.3□□□□□ -1.4
LDLR-214ENST00000560628 KRTAP10-8P60410 259 aa6.3□□□□□ -1.4
LDLR-214ENST00000560628 MRPL35Q9NZE8 188 aaKnown RBP6.3□□□□□ -1.4
LDLR-214ENST00000560628 PSORS1C2Q9UIG4 136 aa6.3□□□□□ -1.4
LDLR-214ENST00000560628 IGLV4-3A0A075B6K6 122 aa6.29□□□□□ -1.4
LDLR-214ENST00000560628 TGIF2-C20orf24A0A0A6YYL0 155 aa6.29□□□□□ -1.4
LDLR-214ENST00000560628 NDUFA1O15239 70 aa6.29□□□□□ -1.4
LDLR-214ENST00000560628 LINC00242Q5T6M2 205 aa6.29□□□□□ -1.4
LDLR-214ENST00000560628 ZC2HC1BQ5TFG8 222 aa6.29□□□□□ -1.4
LDLR-214ENST00000560628 IMMP2LQ96T52 175 aa6.29□□□□□ -1.4
LDLR-214ENST00000560628 PYGO1Q9Y3Y4 419 aa6.29□□□□□ -1.4
LDLR-214ENST00000560628 FAM168BA1KXE4 195 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 F8WDY8 70 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 MT-ND4LP03901 98 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 RAB14P61106 215 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 GAGE2EQ4V326 116 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 C1orf137Q5JT78 98 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 TMEM141Q96I45 108 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 MAP1LC3AQ9H492 121 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 C6orf48Q9UBA6 75 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 GAGE2DQ9UEU5 116 aa6.28□□□□□ -1.4
LDLR-214ENST00000560628 A0A087WZ39 114 aa6.27□□□□□ -1.41
LDLR-214ENST00000560628 PRSS47A8MTI9 375 aa6.27□□□□□ -1.41
LDLR-214ENST00000560628 PNRC1Q12796 327 aaPredicted RBP6.27□□□□□ -1.41
LDLR-214ENST00000560628 KIAA0087Q14695 138 aa6.27□□□□□ -1.41
LDLR-214ENST00000560628 C2orf82Q6UX34 121 aa6.27□□□□□ -1.41
LDLR-214ENST00000560628 Q8N8P6 123 aa6.27□□□□□ -1.41
LDLR-214ENST00000560628 ANAPC16Q96DE5 110 aa6.27□□□□□ -1.41
LDLR-214ENST00000560628 UBR4Q5T4S7 5183 aa6.27□□□□□ -1.41
LDLR-214ENST00000560628 TNXBP22105 4242 aa6.26□□□□□ -1.41
LDLR-214ENST00000560628 UBE2D1P51668 147 aa6.26□□□□□ -1.41
LDLR-214ENST00000560628 C2orf66Q6UXQ4 117 aa6.26□□□□□ -1.41
LDLR-214ENST00000560628 TEX43Q6ZNM6 134 aa6.26□□□□□ -1.41
LDLR-214ENST00000560628 FAM19A5Q7Z5A7 132 aaPredicted RBP6.26□□□□□ -1.41
LDLR-214ENST00000560628 KRTAP11-1Q8IUC1 163 aa6.26□□□□□ -1.41
LDLR-214ENST00000560628 CYSLTR1Q9Y271 337 aa6.26□□□□□ -1.41
LDLR-214ENST00000560628 LAMTOR2Q9Y2Q5 125 aa6.26□□□□□ -1.41
LDLR-214ENST00000560628 TLX1NBP0CAT3 122 aa6.25□□□□□ -1.41
LDLR-214ENST00000560628 C2orf88Q9BSF0 95 aa6.25□□□□□ -1.41
LDLR-214ENST00000560628 CTDSP1Q9GZU7 261 aa6.25□□□□□ -1.41
LDLR-214ENST00000560628 VCX2Q9H322 139 aa6.25□□□□□ -1.41
LDLR-214ENST00000560628 IGLV7-43P04211 117 aa6.24□□□□□ -1.41
LDLR-214ENST00000560628 KIAA1644Q3SXP7 199 aa6.24□□□□□ -1.41
LDLR-214ENST00000560628 Q6ZN92 141 aa6.24□□□□□ -1.41
LDLR-214ENST00000560628 LINC00173Q6ZV60 143 aa6.24□□□□□ -1.41
LDLR-214ENST00000560628 KRTAP7-1Q8IUC3 87 aa6.24□□□□□ -1.41
LDLR-214ENST00000560628 PACRGQ96M98 296 aaPredicted RBP6.24□□□□□ -1.41
LDLR-214ENST00000560628 AMELXQ99217 191 aa6.24□□□□□ -1.41
LDLR-214ENST00000560628 TOMM7Q9P0U1 55 aa6.24□□□□□ -1.41
LDLR-214ENST00000560628 IGIPA6NJ69 53 aa6.23□□□□□ -1.41
LDLR-214ENST00000560628 ORMDL2Q53FV1 153 aa6.23□□□□□ -1.41
LDLR-214ENST00000560628 TRBV30A0A0K0K1B3 111 aa6.22□□□□□ -1.41
LDLR-214ENST00000560628 PRSS2P07478 247 aa6.22□□□□□ -1.41
LDLR-214ENST00000560628 LINC01561Q8N1V8 128 aa6.22□□□□□ -1.41
LDLR-214ENST00000560628 NXT2Q9NPJ8 142 aaKnown RBP6.22□□□□□ -1.41
LDLR-214ENST00000560628 NDUFC2-KCTD14E9PQ53 114 aa6.21□□□□□ -1.42
LDLR-214ENST00000560628 M0QXV9 152 aa6.21□□□□□ -1.42
LDLR-214ENST00000560628 CKS1BP61024 79 aa6.21□□□□□ -1.42
LDLR-214ENST00000560628 UBE2BP63146 152 aa6.21□□□□□ -1.42
LDLR-214ENST00000560628 C6orf226Q5I0X4 101 aa6.21□□□□□ -1.42
LDLR-214ENST00000560628 CLLU1Q5K131 121 aa6.21□□□□□ -1.42
LDLR-214ENST00000560628 C9orf129Q5T035 196 aaKnown RBP6.21□□□□□ -1.42
LDLR-214ENST00000560628 LINC00469Q8N7U9 141 aa6.21□□□□□ -1.42
LDLR-214ENST00000560628 PRR26Q8N8Z3 221 aa6.21□□□□□ -1.42
LDLR-214ENST00000560628 DIRC1Q969H9 104 aa6.21□□□□□ -1.42
LDLR-214ENST00000560628 ALKBH7Q9BT30 221 aaPredicted RBP6.21□□□□□ -1.42
LDLR-214ENST00000560628 K7EMI3 77 aa6.2□□□□□ -1.42
LDLR-214ENST00000560628 GEMIN7Q9H840 131 aaKnown RBP6.2□□□□□ -1.42
LDLR-214ENST00000560628 CDKN2A-AS1Q9UH64 79 aa6.2□□□□□ -1.42
LDLR-214ENST00000560628 H0Y9J4 135 aa6.19□□□□□ -1.42
LDLR-214ENST00000560628 NPSP0C0P6 89 aa6.19□□□□□ -1.42
LDLR-214ENST00000560628 ADCYAP1P18509 176 aa6.19□□□□□ -1.42
LDLR-214ENST00000560628 TOMM6Q96B49 74 aa6.19□□□□□ -1.42
LDLR-214ENST00000560628 SCGB3A1Q96QR1 104 aa6.19□□□□□ -1.42
LDLR-214ENST00000560628 TMEM218A2RU14 115 aa6.18□□□□□ -1.42
LDLR-214ENST00000560628 G0S2P27469 103 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms