RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 IFI27P40305 119 aaPredicted RBP7.86□□□□□ -1.15
SNX1-209ENST00000559961 RNF151Q2KHN1 245 aa7.86□□□□□ -1.15
SNX1-209ENST00000559961 ORMDL3Q8N138 153 aa7.86□□□□□ -1.15
SNX1-209ENST00000559961 ORAOV1Q8WV07 137 aa7.86□□□□□ -1.15
SNX1-209ENST00000559961 FAT3Q8TDW7 4589 aa7.85□□□□□ -1.15
SNX1-209ENST00000559961 MT1HL1P0DM35 61 aa7.85□□□□□ -1.15
SNX1-209ENST00000559961 RPL39P62891 51 aaKnown RBP7.85□□□□□ -1.15
SNX1-209ENST00000559961 TMEM136Q6ZRR5 245 aa7.85□□□□□ -1.15
SNX1-209ENST00000559961 ATP5L2Q7Z4Y8 100 aa7.85□□□□□ -1.15
SNX1-209ENST00000559961 RAB14P61106 215 aa7.84□□□□□ -1.15
SNX1-209ENST00000559961 MRPS36P82909 103 aaKnown RBP7.84□□□□□ -1.15
SNX1-209ENST00000559961 PRELID3AQ96N28 172 aa7.84□□□□□ -1.15
SNX1-209ENST00000559961 C9JQL5 133 aa7.83□□□□□ -1.16
SNX1-209ENST00000559961 C9orf116Q5BN46 136 aaPredicted RBP7.83□□□□□ -1.16
SNX1-209ENST00000559961 Q6ZN92 141 aa7.83□□□□□ -1.16
SNX1-209ENST00000559961 OPRPNQ99935 248 aaPredicted RBP7.83□□□□□ -1.16
SNX1-209ENST00000559961 C2orf88Q9BSF0 95 aa7.83□□□□□ -1.16
SNX1-209ENST00000559961 MRPL35Q9NZE8 188 aaKnown RBP7.83□□□□□ -1.16
SNX1-209ENST00000559961 A0A0J9YXV3 536 aa7.82□□□□□ -1.16
SNX1-209ENST00000559961 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.82□□□□□ -1.16
SNX1-209ENST00000559961 NPYP01303 97 aa7.82□□□□□ -1.16
SNX1-209ENST00000559961 MT-ND4LP03901 98 aa7.82□□□□□ -1.16
SNX1-209ENST00000559961 SRSF3P84103 164 aaKnown RBP7.82□□□□□ -1.16
SNX1-209ENST00000559961 MAP1LC3AQ9H492 121 aa7.82□□□□□ -1.16
SNX1-209ENST00000559961 LAMTOR2Q9Y2Q5 125 aa7.82□□□□□ -1.16
SNX1-209ENST00000559961 PNRC1Q12796 327 aaPredicted RBP7.81□□□□□ -1.16
SNX1-209ENST00000559961 C1orf137Q5JT78 98 aa7.81□□□□□ -1.16
SNX1-209ENST00000559961 TEX43Q6ZNM6 134 aa7.81□□□□□ -1.16
SNX1-209ENST00000559961 PACRGQ96M98 296 aaPredicted RBP7.81□□□□□ -1.16
SNX1-209ENST00000559961 IGHV3OR16-9A0A0B4J2B5 98 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 LOC389332A0A1B0GUA5 103 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 A0A1B0GVG6 124 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 A0A1B0GXF2 115 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 A0A1W2PNN7 141 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 PRSS2P07478 247 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 G0S2P27469 103 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 ANAPC16Q96DE5 110 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 TMEM141Q96I45 108 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 PYGO1Q9Y3Y4 419 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 HMCN2Q8NDA2 5059 aa7.8□□□□□ -1.16
SNX1-209ENST00000559961 PKHD1L1Q86WI1 4243 aa7.79□□□□□ -1.16
SNX1-209ENST00000559961 A0A087WZ39 114 aa7.79□□□□□ -1.16
SNX1-209ENST00000559961 SRSF9Q13242 221 aaKnown RBP eCLIP7.79□□□□□ -1.16
SNX1-209ENST00000559961 GAGE2EQ4V326 116 aa7.79□□□□□ -1.16
SNX1-209ENST00000559961 ORMDL2Q53FV1 153 aa7.79□□□□□ -1.16
SNX1-209ENST00000559961 PAPPA-AS1Q5QFB9 102 aa7.79□□□□□ -1.16
SNX1-209ENST00000559961 VCX2Q9H322 139 aa7.79□□□□□ -1.16
SNX1-209ENST00000559961 GAGE2DQ9UEU5 116 aa7.79□□□□□ -1.16
SNX1-209ENST00000559961 PSORS1C2Q9UIG4 136 aa7.79□□□□□ -1.16
SNX1-209ENST00000559961 CYSLTR1Q9Y271 337 aa7.79□□□□□ -1.16
SNX1-209ENST00000559961 DIRC1Q969H9 104 aa7.78□□□□□ -1.16
SNX1-209ENST00000559961 TRBV30A0A0K0K1B3 111 aa7.77□□□□□ -1.17
SNX1-209ENST00000559961 CKS1BP61024 79 aa7.77□□□□□ -1.17
SNX1-209ENST00000559961 UBE2BP63146 152 aa7.77□□□□□ -1.17
SNX1-209ENST00000559961 UNQ6190/PRO20217Q6UXQ8 127 aa7.77□□□□□ -1.17
SNX1-209ENST00000559961 PHF5AQ7RTV0 110 aaKnown RBP7.77□□□□□ -1.17
SNX1-209ENST00000559961 IGLV4-3A0A075B6K6 122 aa7.76□□□□□ -1.17
SNX1-209ENST00000559961 K7EMI3 77 aa7.76□□□□□ -1.17
SNX1-209ENST00000559961 TLX1NBP0CAT3 122 aa7.76□□□□□ -1.17
SNX1-209ENST00000559961 SEC11AP67812 179 aa7.76□□□□□ -1.17
SNX1-209ENST00000559961 FAM19A5Q7Z5A7 132 aaPredicted RBP7.76□□□□□ -1.17
SNX1-209ENST00000559961 Q8N8P6 123 aa7.76□□□□□ -1.17
SNX1-209ENST00000559961 CTDSP1Q9GZU7 261 aa7.76□□□□□ -1.17
SNX1-209ENST00000559961 PRSS47A8MTI9 375 aa7.75□□□□□ -1.17
SNX1-209ENST00000559961 NPSP0C0P6 89 aa7.75□□□□□ -1.17
SNX1-209ENST00000559961 KRTAP10-8P60410 259 aa7.75□□□□□ -1.17
SNX1-209ENST00000559961 ODF1Q14990 250 aa7.75□□□□□ -1.17
SNX1-209ENST00000559961 C6orf226Q5I0X4 101 aa7.75□□□□□ -1.17
SNX1-209ENST00000559961 LINC00242Q5T6M2 205 aa7.75□□□□□ -1.17
SNX1-209ENST00000559961 C2orf66Q6UXQ4 117 aa7.75□□□□□ -1.17
SNX1-209ENST00000559961 LINC01561Q8N1V8 128 aa7.75□□□□□ -1.17
SNX1-209ENST00000559961 NXT2Q9NPJ8 142 aaKnown RBP7.75□□□□□ -1.17
SNX1-209ENST00000559961 C10orf25Q5T742 122 aa7.74□□□□□ -1.17
SNX1-209ENST00000559961 TOMM7Q9P0U1 55 aa7.74□□□□□ -1.17
SNX1-209ENST00000559961 C6orf48Q9UBA6 75 aa7.74□□□□□ -1.17
SNX1-209ENST00000559961 NDUFC2-KCTD14E9PQ53 114 aa7.73□□□□□ -1.17
SNX1-209ENST00000559961 IGLV7-43P04211 117 aa7.73□□□□□ -1.17
SNX1-209ENST00000559961 UBE2D1P51668 147 aa7.73□□□□□ -1.17
SNX1-209ENST00000559961 GEMIN7Q9H840 131 aaKnown RBP7.73□□□□□ -1.17
SNX1-209ENST00000559961 M0QXV9 152 aa7.72□□□□□ -1.17
SNX1-209ENST00000559961 LCE2BO14633 110 aa7.72□□□□□ -1.17
SNX1-209ENST00000559961 HERVK_113P63121 156 aa7.72□□□□□ -1.17
SNX1-209ENST00000559961 FAM104AQ969W3 186 aa7.72□□□□□ -1.17
SNX1-209ENST00000559961 ALKBH7Q9BT30 221 aaPredicted RBP7.72□□□□□ -1.17
SNX1-209ENST00000559961 FAM168BA1KXE4 195 aa7.71□□□□□ -1.18
SNX1-209ENST00000559961 C2orf82Q6UX34 121 aa7.71□□□□□ -1.18
SNX1-209ENST00000559961 LINC01549A6NIU2 74 aa7.7□□□□□ -1.18
SNX1-209ENST00000559961 S100PP25815 95 aa7.7□□□□□ -1.18
SNX1-209ENST00000559961 KIAA0087Q14695 138 aa7.7□□□□□ -1.18
SNX1-209ENST00000559961 LBHQ53QV2 105 aaPredicted RBP7.7□□□□□ -1.18
SNX1-209ENST00000559961 UBR4Q5T4S7 5183 aa7.7□□□□□ -1.18
SNX1-209ENST00000559961 Q8IZM0 81 aa7.69□□□□□ -1.18
SNX1-209ENST00000559961 AMELXQ99217 191 aa7.69□□□□□ -1.18
SNX1-209ENST00000559961 H0Y9J4 135 aa7.68□□□□□ -1.18
SNX1-209ENST00000559961 SCGB3A1Q96QR1 104 aa7.68□□□□□ -1.18
SNX1-209ENST00000559961 IGLV1-50A0A075B6I6 118 aa7.67□□□□□ -1.18
SNX1-209ENST00000559961 TRAV9-1A0A075B6T8 112 aa7.67□□□□□ -1.18
SNX1-209ENST00000559961 IGIPA6NJ69 53 aa7.67□□□□□ -1.18
SNX1-209ENST00000559961 CXCL5P42830 114 aa7.67□□□□□ -1.18
SNX1-209ENST00000559961 TIMM17AQ99595 171 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms