RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ORMDL3Q8N138 153 aa10.97□□□□□ -0.65
HDDC3-205ENST00000559898 SPANXA1Q9NS26 97 aa10.97□□□□□ -0.65
HDDC3-205ENST00000559898 IGLV4-3A0A075B6K6 122 aa10.96□□□□□ -0.65
HDDC3-205ENST00000559898 IFITM10A6NMD0 228 aa10.96□□□□□ -0.65
HDDC3-205ENST00000559898 APOMO95445 188 aa10.96□□□□□ -0.65
HDDC3-205ENST00000559898 MRPS36P82909 103 aaKnown RBP10.96□□□□□ -0.65
HDDC3-205ENST00000559898 RPL18AQ02543 176 aaKnown RBP10.96□□□□□ -0.65
HDDC3-205ENST00000559898 SMAGPQ0VAQ4 97 aa10.96□□□□□ -0.65
HDDC3-205ENST00000559898 ORAOV1Q8WV07 137 aa10.96□□□□□ -0.65
HDDC3-205ENST00000559898 C2orf48Q96LS8 159 aa10.96□□□□□ -0.65
HDDC3-205ENST00000559898 LINC00474Q9P2X8 69 aa10.96□□□□□ -0.65
HDDC3-205ENST00000559898 PPBPP02775 128 aa10.95□□□□□ -0.66
HDDC3-205ENST00000559898 SRSF9Q13242 221 aaKnown RBP eCLIP10.95□□□□□ -0.66
HDDC3-205ENST00000559898 PHF5AQ7RTV0 110 aaKnown RBP10.95□□□□□ -0.66
HDDC3-205ENST00000559898 ATP5L2Q7Z4Y8 100 aa10.95□□□□□ -0.66
HDDC3-205ENST00000559898 FAM168BA1KXE4 195 aa10.94□□□□□ -0.66
HDDC3-205ENST00000559898 C9orf116Q5BN46 136 aaPredicted RBP10.94□□□□□ -0.66
HDDC3-205ENST00000559898 UNQ6190/PRO20217Q6UXQ8 127 aa10.94□□□□□ -0.66
HDDC3-205ENST00000559898 KRTAP11-1Q8IUC1 163 aa10.94□□□□□ -0.66
HDDC3-205ENST00000559898 LINC01600Q96MT4 127 aa10.94□□□□□ -0.66
HDDC3-205ENST00000559898 LINC00242Q5T6M2 205 aa10.93□□□□□ -0.66
HDDC3-205ENST00000559898 PRSS47A8MTI9 375 aa10.92□□□□□ -0.66
HDDC3-205ENST00000559898 ADCYAP1P18509 176 aa10.92□□□□□ -0.66
HDDC3-205ENST00000559898 KIAA0087Q14695 138 aa10.92□□□□□ -0.66
HDDC3-205ENST00000559898 LINC00173Q6ZV60 143 aa10.92□□□□□ -0.66
HDDC3-205ENST00000559898 OR10D4PQ8NGN7 298 aa10.92□□□□□ -0.66
HDDC3-205ENST00000559898 C6orf48Q9UBA6 75 aa10.92□□□□□ -0.66
HDDC3-205ENST00000559898 RAB5AP20339 215 aa10.91□□□□□ -0.66
HDDC3-205ENST00000559898 Q6ZRP5 223 aa10.91□□□□□ -0.66
HDDC3-205ENST00000559898 KRTAP7-1Q8IUC3 87 aa10.91□□□□□ -0.66
HDDC3-205ENST00000559898 PSORS1C2Q9UIG4 136 aa10.91□□□□□ -0.66
HDDC3-205ENST00000559898 IFI27P40305 119 aaPredicted RBP10.9□□□□□ -0.66
HDDC3-205ENST00000559898 SPINK6Q6UWN8 80 aa10.9□□□□□ -0.66
HDDC3-205ENST00000559898 ANAPC16Q96DE5 110 aa10.9□□□□□ -0.66
HDDC3-205ENST00000559898 MRPL35Q9NZE8 188 aaKnown RBP10.9□□□□□ -0.66
HDDC3-205ENST00000559898 PKIGQ9Y2B9 76 aa10.9□□□□□ -0.66
HDDC3-205ENST00000559898 PYGO1Q9Y3Y4 419 aa10.9□□□□□ -0.66
HDDC3-205ENST00000559898 MT-ND4LP03901 98 aa10.89□□□□□ -0.67
HDDC3-205ENST00000559898 KRTAP10-8P60410 259 aa10.89□□□□□ -0.67
HDDC3-205ENST00000559898 IFITM2Q01629 132 aa10.89□□□□□ -0.67
HDDC3-205ENST00000559898 PNRC1Q12796 327 aaPredicted RBP10.89□□□□□ -0.67
HDDC3-205ENST00000559898 RNF151Q2KHN1 245 aa10.89□□□□□ -0.67
HDDC3-205ENST00000559898 C2orf82Q6UX34 121 aa10.89□□□□□ -0.67
HDDC3-205ENST00000559898 Q8N8P6 123 aa10.89□□□□□ -0.67
HDDC3-205ENST00000559898 MAP1LC3AQ9H492 121 aa10.89□□□□□ -0.67
HDDC3-205ENST00000559898 A0A087WZ39 114 aa10.88□□□□□ -0.67
HDDC3-205ENST00000559898 UBE2D1P51668 147 aa10.88□□□□□ -0.67
HDDC3-205ENST00000559898 KIAA1644Q3SXP7 199 aa10.88□□□□□ -0.67
HDDC3-205ENST00000559898 C2orf66Q6UXQ4 117 aa10.88□□□□□ -0.67
HDDC3-205ENST00000559898 TMEM141Q96I45 108 aa10.88□□□□□ -0.67
HDDC3-205ENST00000559898 NDUFA1O15239 70 aa10.87□□□□□ -0.67
HDDC3-205ENST00000559898 TGIF2-C20orf24A0A0A6YYL0 155 aa10.86□□□□□ -0.67
HDDC3-205ENST00000559898 RAB14P61106 215 aa10.86□□□□□ -0.67
HDDC3-205ENST00000559898 GAGE2EQ4V326 116 aa10.86□□□□□ -0.67
HDDC3-205ENST00000559898 CLLU1Q5K131 121 aa10.86□□□□□ -0.67
HDDC3-205ENST00000559898 GAGE2DQ9UEU5 116 aa10.86□□□□□ -0.67
HDDC3-205ENST00000559898 FAM19A5Q7Z5A7 132 aaPredicted RBP10.85□□□□□ -0.67
HDDC3-205ENST00000559898 AMELXQ99217 191 aa10.85□□□□□ -0.67
HDDC3-205ENST00000559898 LAMTOR2Q9Y2Q5 125 aa10.85□□□□□ -0.67
HDDC3-205ENST00000559898 IGIPA6NJ69 53 aa10.84□□□□□ -0.67
HDDC3-205ENST00000559898 C1orf137Q5JT78 98 aa10.84□□□□□ -0.67
HDDC3-205ENST00000559898 TEX43Q6ZNM6 134 aa10.84□□□□□ -0.67
HDDC3-205ENST00000559898 CYSLTR1Q9Y271 337 aa10.84□□□□□ -0.67
HDDC3-205ENST00000559898 MT-ND6P03923 174 aa10.83□□□□□ -0.68
HDDC3-205ENST00000559898 TLX1NBP0CAT3 122 aa10.83□□□□□ -0.68
HDDC3-205ENST00000559898 IMMP2LQ96T52 175 aa10.83□□□□□ -0.68
HDDC3-205ENST00000559898 LRP2P98164 4655 aa10.83□□□□□ -0.68
HDDC3-205ENST00000559898 C9orf129Q5T035 196 aaKnown RBP10.82□□□□□ -0.68
HDDC3-205ENST00000559898 F8WDY8 70 aa10.81□□□□□ -0.68
HDDC3-205ENST00000559898 REG3GQ6UW15 175 aa10.81□□□□□ -0.68
HDDC3-205ENST00000559898 CTDSP1Q9GZU7 261 aa10.81□□□□□ -0.68
HDDC3-205ENST00000559898 TMEM218A2RU14 115 aa10.8□□□□□ -0.68
HDDC3-205ENST00000559898 ORMDL2Q53FV1 153 aa10.79□□□□□ -0.68
HDDC3-205ENST00000559898 VCX2Q9H322 139 aa10.79□□□□□ -0.68
HDDC3-205ENST00000559898 TOMM7Q9P0U1 55 aa10.79□□□□□ -0.68
HDDC3-205ENST00000559898 C2orf88Q9BSF0 95 aa10.78□□□□□ -0.68
HDDC3-205ENST00000559898 CDKN2A-AS1Q9UH64 79 aa10.78□□□□□ -0.68
HDDC3-205ENST00000559898 IGLV7-43P04211 117 aa10.77□□□□□ -0.69
HDDC3-205ENST00000559898 FAM19A3Q7Z5A8 133 aa10.77□□□□□ -0.69
HDDC3-205ENST00000559898 LINC00469Q8N7U9 141 aa10.77□□□□□ -0.69
HDDC3-205ENST00000559898 NXT2Q9NPJ8 142 aaKnown RBP10.77□□□□□ -0.69
HDDC3-205ENST00000559898 TRBV30A0A0K0K1B3 111 aa10.76□□□□□ -0.69
HDDC3-205ENST00000559898 Q6ZN92 141 aa10.76□□□□□ -0.69
HDDC3-205ENST00000559898 LINC01561Q8N1V8 128 aa10.76□□□□□ -0.69
HDDC3-205ENST00000559898 TOMM6Q96B49 74 aa10.76□□□□□ -0.69
HDDC3-205ENST00000559898 NDUFC2-KCTD14E9PQ53 114 aa10.75□□□□□ -0.69
HDDC3-205ENST00000559898 M0QXV9 152 aa10.75□□□□□ -0.69
HDDC3-205ENST00000559898 UQCC3Q6UW78 93 aa10.74□□□□□ -0.69
HDDC3-205ENST00000559898 PACRGQ96M98 296 aaPredicted RBP10.74□□□□□ -0.69
HDDC3-205ENST00000559898 PRR26Q8N8Z3 221 aa10.73□□□□□ -0.69
HDDC3-205ENST00000559898 TIMM17AQ99595 171 aa10.73□□□□□ -0.69
HDDC3-205ENST00000559898 ALKBH7Q9BT30 221 aaPredicted RBP10.73□□□□□ -0.69
HDDC3-205ENST00000559898 K7EMI3 77 aa10.72□□□□□ -0.69
HDDC3-205ENST00000559898 COMMD7Q86VX2 200 aa10.72□□□□□ -0.69
HDDC3-205ENST00000559898 Q8IZM0 81 aa10.72□□□□□ -0.69
HDDC3-205ENST00000559898 XAGE1AQ9HD64 81 aa10.72□□□□□ -0.69
HDDC3-205ENST00000559898 PRSS2P07478 247 aa10.71□□□□□ -0.69
HDDC3-205ENST00000559898 LPAP08519 4548 aa10.71□□□□□ -0.69
HDDC3-205ENST00000559898 NPSP0C0P6 89 aa10.71□□□□□ -0.69
HDDC3-205ENST00000559898 C6orf226Q5I0X4 101 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms