RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CSDC2Q9Y534 153 aaKnown RBP6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 V9GYV3 84 aa6.89□□□□□ -1.31
CCDC88C-213ENST00000557455 A0A0J9YXV3 536 aa6.88□□□□□ -1.31
CCDC88C-213ENST00000557455 RNASE13Q5GAN3 156 aaKnown RBP6.88□□□□□ -1.31
CCDC88C-213ENST00000557455 NRACQ8N912 160 aa6.88□□□□□ -1.31
CCDC88C-213ENST00000557455 TMEM18Q96B42 140 aa6.88□□□□□ -1.31
CCDC88C-213ENST00000557455 YPEL4Q96NS1 127 aa6.88□□□□□ -1.31
CCDC88C-213ENST00000557455 CAMK2N2Q96S95 79 aa6.88□□□□□ -1.31
CCDC88C-213ENST00000557455 NAT8BQ9UHF3 227 aa6.88□□□□□ -1.31
CCDC88C-213ENST00000557455 LRP2P98164 4655 aa6.88□□□□□ -1.31
CCDC88C-213ENST00000557455 TRAV13-1A0A0B4J241 112 aa6.87□□□□□ -1.31
CCDC88C-213ENST00000557455 SRSF9Q13242 221 aaKnown RBP eCLIP6.87□□□□□ -1.31
CCDC88C-213ENST00000557455 IMMP2LQ96T52 175 aa6.87□□□□□ -1.31
CCDC88C-213ENST00000557455 TRBV24-1A0A075B6N3 115 aa6.86□□□□□ -1.31
CCDC88C-213ENST00000557455 APOMO95445 188 aa6.86□□□□□ -1.31
CCDC88C-213ENST00000557455 ODF1Q14990 250 aa6.86□□□□□ -1.31
CCDC88C-213ENST00000557455 MRPL51Q4U2R6 128 aaKnown RBP6.86□□□□□ -1.31
CCDC88C-213ENST00000557455 FAM104BQ5XKR9 115 aa6.86□□□□□ -1.31
CCDC88C-213ENST00000557455 C5orf38Q86SI9 138 aa6.86□□□□□ -1.31
CCDC88C-213ENST00000557455 C2orf48Q96LS8 159 aa6.86□□□□□ -1.31
CCDC88C-213ENST00000557455 TGIF2-C20orf24A0A0A6YYL0 155 aa6.85□□□□□ -1.31
CCDC88C-213ENST00000557455 LOC105371267A0A1B0GV96 52 aa6.85□□□□□ -1.31
CCDC88C-213ENST00000557455 A0A1W2PNN7 141 aa6.85□□□□□ -1.31
CCDC88C-213ENST00000557455 KRTAP10-8P60410 259 aa6.85□□□□□ -1.31
CCDC88C-213ENST00000557455 RPL18AQ02543 176 aaKnown RBP6.85□□□□□ -1.31
CCDC88C-213ENST00000557455 Q6ZUT4 128 aa6.85□□□□□ -1.31
CCDC88C-213ENST00000557455 C20orf78Q9BR46 151 aa6.85□□□□□ -1.31
CCDC88C-213ENST00000557455 TIMM21Q9BVV7 248 aa6.85□□□□□ -1.31
CCDC88C-213ENST00000557455 RNF213Q63HN8 5207 aa6.85□□□□□ -1.31
CCDC88C-213ENST00000557455 TRAV9-1A0A075B6T8 112 aa6.84□□□□□ -1.31
CCDC88C-213ENST00000557455 SMIM27A0A1W2PRY6 76 aa6.84□□□□□ -1.31
CCDC88C-213ENST00000557455 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.84□□□□□ -1.31
CCDC88C-213ENST00000557455 TCAPO15273 167 aa6.84□□□□□ -1.31
CCDC88C-213ENST00000557455 CKS2P33552 79 aa6.84□□□□□ -1.31
CCDC88C-213ENST00000557455 C9orf116Q5BN46 136 aaPredicted RBP6.84□□□□□ -1.31
CCDC88C-213ENST00000557455 A0A1B0GW15 77 aa6.83□□□□□ -1.32
CCDC88C-213ENST00000557455 S100A6P06703 90 aa6.83□□□□□ -1.32
CCDC88C-213ENST00000557455 RPL39P62891 51 aaKnown RBP6.83□□□□□ -1.32
CCDC88C-213ENST00000557455 SPAG11BQ08648 103 aa6.83□□□□□ -1.32
CCDC88C-213ENST00000557455 OR10D4PQ8NGN7 298 aa6.83□□□□□ -1.32
CCDC88C-213ENST00000557455 OPRPNQ99935 248 aaPredicted RBP6.83□□□□□ -1.32
CCDC88C-213ENST00000557455 TNFRSF6BO95407 300 aa6.82□□□□□ -1.32
CCDC88C-213ENST00000557455 MT-ND6P03923 174 aa6.82□□□□□ -1.32
CCDC88C-213ENST00000557455 RPL32P62910 135 aaKnown RBP6.82□□□□□ -1.32
CCDC88C-213ENST00000557455 RNF151Q2KHN1 245 aa6.82□□□□□ -1.32
CCDC88C-213ENST00000557455 SMIM2Q9BVW6 85 aa6.82□□□□□ -1.32
CCDC88C-213ENST00000557455 PSORS1C2Q9UIG4 136 aa6.82□□□□□ -1.32
CCDC88C-213ENST00000557455 D6R8Y8 96 aa6.81□□□□□ -1.32
CCDC88C-213ENST00000557455 C1orf137Q5JT78 98 aa6.81□□□□□ -1.32
CCDC88C-213ENST00000557455 MRPL54Q6P161 138 aaKnown RBP6.81□□□□□ -1.32
CCDC88C-213ENST00000557455 ORAOV1Q8WV07 137 aa6.81□□□□□ -1.32
CCDC88C-213ENST00000557455 SPANXA1Q9NS26 97 aa6.81□□□□□ -1.32
CCDC88C-213ENST00000557455 IGHV3OR16-9A0A0B4J2B5 98 aa6.8□□□□□ -1.32
CCDC88C-213ENST00000557455 F8WDY8 70 aa6.8□□□□□ -1.32
CCDC88C-213ENST00000557455 S100A8P05109 93 aa6.8□□□□□ -1.32
CCDC88C-213ENST00000557455 PHF5AQ7RTV0 110 aaKnown RBP6.8□□□□□ -1.32
CCDC88C-213ENST00000557455 MRPL35Q9NZE8 188 aaKnown RBP6.8□□□□□ -1.32
CCDC88C-213ENST00000557455 IFITM10A6NMD0 228 aa6.79□□□□□ -1.32
CCDC88C-213ENST00000557455 NDUFA1O15239 70 aa6.79□□□□□ -1.32
CCDC88C-213ENST00000557455 HBBP68871 147 aa6.79□□□□□ -1.32
CCDC88C-213ENST00000557455 MRPS36P82909 103 aaKnown RBP6.79□□□□□ -1.32
CCDC88C-213ENST00000557455 COX19Q49B96 90 aa6.79□□□□□ -1.32
CCDC88C-213ENST00000557455 FAM104AQ969W3 186 aa6.79□□□□□ -1.32
CCDC88C-213ENST00000557455 NPYP01303 97 aa6.78□□□□□ -1.32
CCDC88C-213ENST00000557455 PPBPP02775 128 aa6.78□□□□□ -1.32
CCDC88C-213ENST00000557455 TRGC2P03986 189 aa6.78□□□□□ -1.32
CCDC88C-213ENST00000557455 A0A1B0GXF2 115 aa6.77□□□□□ -1.33
CCDC88C-213ENST00000557455 IFI27P40305 119 aaPredicted RBP6.77□□□□□ -1.33
CCDC88C-213ENST00000557455 C10orf25Q5T742 122 aa6.77□□□□□ -1.33
CCDC88C-213ENST00000557455 A0A087WZ39 114 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 FAM168BA1KXE4 195 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 C5orf52A6NGY3 159 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST1H2BKO60814 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 IGLV7-43P04211 117 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST1H2BJP06899 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 TLX1NBP0CAT3 122 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST1H2BOP23527 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST1H2BBP33778 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST1H2BDP58876 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 SNRPEP62304 92 aaKnown RBP6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST1H2BCP62807 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST2H2BEQ16778 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 UNQ6190/PRO20217Q6UXQ8 127 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 ORMDL3Q8N138 153 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST1H2BHQ93079 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST1H2BNQ99877 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 HIST1H2BMQ99879 126 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 C6orf48Q9UBA6 75 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 TRAPPC1Q9Y5R8 145 aa6.76□□□□□ -1.33
CCDC88C-213ENST00000557455 AKR1D1P51857 326 aa6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 NDUFA6P56556 154 aa6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 FABP9Q0Z7S8 132 aa6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 GAGE2EQ4V326 116 aa6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 TMEM136Q6ZRR5 245 aa6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 ATP5L2Q7Z4Y8 100 aa6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 FAM19A5Q7Z5A7 132 aaPredicted RBP6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 DIRC1Q969H9 104 aa6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 PRELID3AQ96N28 172 aa6.75□□□□□ -1.33
CCDC88C-213ENST00000557455 GAGE2DQ9UEU5 116 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms