RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 LINC00526Q96FQ7 95 aa7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 AMELXQ99217 191 aa7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 LINC00242Q5T6M2 205 aa7.43□□□□□ -1.22
CCDC88C-212ENST00000556767 IGHV3OR16-9A0A0B4J2B5 98 aa7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 SLPIP03973 132 aa7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 NDUFA6P56556 154 aa7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 CNBPP62633 177 aaKnown RBP7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 HAMPP81172 84 aa7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 COX6A2Q02221 97 aa7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 C9orf163Q8N9P6 203 aa7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 CHCHD1Q96BP2 118 aaKnown RBP7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 GEMIN7Q9H840 131 aaKnown RBP7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 FAM30AQ9NZY2 134 aa7.42□□□□□ -1.22
CCDC88C-212ENST00000556767 IGLV4-69A0A075B6H9 119 aa7.41□□□□□ -1.22
CCDC88C-212ENST00000556767 IGHV3-64A0A075B6Q5 118 aa7.41□□□□□ -1.22
CCDC88C-212ENST00000556767 A0A096LNJ9 63 aa7.41□□□□□ -1.22
CCDC88C-212ENST00000556767 HSBP1O75506 76 aa7.41□□□□□ -1.22
CCDC88C-212ENST00000556767 SPAG11BQ08648 103 aa7.41□□□□□ -1.22
CCDC88C-212ENST00000556767 ORAOV1Q8WV07 137 aa7.41□□□□□ -1.22
CCDC88C-212ENST00000556767 A0A0J9YXV3 536 aa7.4□□□□□ -1.22
CCDC88C-212ENST00000556767 XGP55808 180 aa7.4□□□□□ -1.22
CCDC88C-212ENST00000556767 SEC11AP67812 179 aa7.4□□□□□ -1.22
CCDC88C-212ENST00000556767 PMVKQ15126 192 aa7.4□□□□□ -1.22
CCDC88C-212ENST00000556767 CAMK2N2Q96S95 79 aa7.4□□□□□ -1.22
CCDC88C-212ENST00000556767 CST9LQ9H4G1 147 aa7.4□□□□□ -1.22
CCDC88C-212ENST00000556767 A0A087WZ39 114 aa7.39□□□□□ -1.23
CCDC88C-212ENST00000556767 ATP5LO75964 103 aa7.39□□□□□ -1.23
CCDC88C-212ENST00000556767 S100A1P23297 94 aa7.39□□□□□ -1.23
CCDC88C-212ENST00000556767 HERVK_113P63121 156 aa7.39□□□□□ -1.23
CCDC88C-212ENST00000556767 SYCNQ0VAF6 134 aa7.39□□□□□ -1.23
CCDC88C-212ENST00000556767 DPH3Q96FX2 82 aa7.39□□□□□ -1.23
CCDC88C-212ENST00000556767 CARD19Q96LW7 228 aa7.39□□□□□ -1.23
CCDC88C-212ENST00000556767 DNAH5Q8TE73 4624 aa7.39□□□□□ -1.23
CCDC88C-212ENST00000556767 KIAA1109Q2LD37 5005 aa7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 ATP6V1G1O75348 118 aa7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 SERF1AO75920 110 aa7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 PDZD11Q5EBL8 140 aa7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 SDIM1Q6ZPB5 146 aa7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 FAM19A2Q8N3H0 131 aa7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 LINC00469Q8N7U9 141 aa7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 OR10D4PQ8NGN7 298 aa7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 PACRGQ96M98 296 aaPredicted RBP7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 PKHD1P08F94 4074 aa7.38□□□□□ -1.23
CCDC88C-212ENST00000556767 LRP1BQ9NZR2 4599 aa7.37□□□□□ -1.23
CCDC88C-212ENST00000556767 FAM19A3Q7Z5A8 133 aa7.37□□□□□ -1.23
CCDC88C-212ENST00000556767 C2orf48Q96LS8 159 aa7.37□□□□□ -1.23
CCDC88C-212ENST00000556767 TOMM7Q9P0U1 55 aa7.37□□□□□ -1.23
CCDC88C-212ENST00000556767 CDKN2A-AS1Q9UH64 79 aa7.37□□□□□ -1.23
CCDC88C-212ENST00000556767 TINCRA0A1B0GVN0 87 aa7.36□□□□□ -1.23
CCDC88C-212ENST00000556767 SMR3BP02814 79 aaPredicted RBP7.36□□□□□ -1.23
CCDC88C-212ENST00000556767 PRSS2P07478 247 aa7.36□□□□□ -1.23
CCDC88C-212ENST00000556767 Q6ZRU5 148 aa7.36□□□□□ -1.23
CCDC88C-212ENST00000556767 Q6ZSA8 131 aa7.36□□□□□ -1.23
CCDC88C-212ENST00000556767 SCXQ7RTU7 201 aa7.36□□□□□ -1.23
CCDC88C-212ENST00000556767 IGKV2-24A0A0C4DH68 120 aa7.35□□□□□ -1.23
CCDC88C-212ENST00000556767 NDUFA1O15239 70 aa7.35□□□□□ -1.23
CCDC88C-212ENST00000556767 CHTF8P0CG12 524 aa7.35□□□□□ -1.23
CCDC88C-212ENST00000556767 LINC01561Q8N1V8 128 aa7.35□□□□□ -1.23
CCDC88C-212ENST00000556767 IFI27L1Q96BM0 104 aa7.35□□□□□ -1.23
CCDC88C-212ENST00000556767 CHAC1Q9BUX1 264 aa7.35□□□□□ -1.23
CCDC88C-212ENST00000556767 PKIGQ9Y2B9 76 aa7.35□□□□□ -1.23
CCDC88C-212ENST00000556767 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.35□□□□□ -1.23
CCDC88C-212ENST00000556767 CIRBP-AS1Q8TBR5 109 aa7.34□□□□□ -1.23
CCDC88C-212ENST00000556767 F8WDY8 70 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 H0Y8G0 127 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 H3BRM9 83 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 PANO1I0J062 215 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 NUPR1O60356 82 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST1H2BKO60814 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 LEPROTL1O95214 131 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST1H2BJP06899 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 SPINK8P0C7L1 97 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST1H2BOP23527 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST1H2BBP33778 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST1H2BDP58876 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 LINC00310P59036 64 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 CKS1BP61024 79 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST1H2BCP62807 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 GAGE2BQ13066 116 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST2H2BEQ16778 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 MAJINQ3KP22 176 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 C6orf226Q5I0X4 101 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 UNQ6190/PRO20217Q6UXQ8 127 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 Q8N1X5 172 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST1H2BHQ93079 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST1H2BNQ99877 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 HIST1H2BMQ99879 126 aa7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 CHTOPQ9Y3Y2 248 aaKnown RBP7.33□□□□□ -1.24
CCDC88C-212ENST00000556767 LOC107984640A0A0U1RRK4 108 aa7.32□□□□□ -1.24
CCDC88C-212ENST00000556767 IGLC3P0DOY3 106 aa7.32□□□□□ -1.24
CCDC88C-212ENST00000556767 FABP4P15090 132 aa7.32□□□□□ -1.24
CCDC88C-212ENST00000556767 KIAA0087Q14695 138 aa7.32□□□□□ -1.24
CCDC88C-212ENST00000556767 C10orf25Q5T742 122 aa7.32□□□□□ -1.24
CCDC88C-212ENST00000556767 C2orf82Q6UX34 121 aa7.32□□□□□ -1.24
CCDC88C-212ENST00000556767 MRPL35Q9NZE8 188 aaKnown RBP7.32□□□□□ -1.24
CCDC88C-212ENST00000556767 RYR1P21817 5038 aa7.31□□□□□ -1.24
CCDC88C-212ENST00000556767 IGLV5-45A0A087WSX0 123 aa7.31□□□□□ -1.24
CCDC88C-212ENST00000556767 A0A096LNI7 61 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms