RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 FAM19A3Q7Z5A8 133 aa12.23□□□□□ -0.45
SHOX-204ENST00000554971 ATP6V0E2Q8NHE4 81 aa12.23□□□□□ -0.45
SHOX-204ENST00000554971 C11orf68Q9H3H3 251 aaKnown RBP12.23□□□□□ -0.45
SHOX-204ENST00000554971 GEMIN7Q9H840 131 aaKnown RBP12.23□□□□□ -0.45
SHOX-204ENST00000554971 SMIM9A6NGZ8 99 aa12.23□□□□□ -0.45
SHOX-204ENST00000554971 DGAT2L7PQ6IED9 249 aa12.23□□□□□ -0.45
SHOX-204ENST00000554971 Q9UF83 564 aa12.23□□□□□ -0.45
SHOX-204ENST00000554971 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.22□□□□□ -0.45
SHOX-204ENST00000554971 IGKV2-29A2NJV5 120 aaPredicted RBP12.22□□□□□ -0.45
SHOX-204ENST00000554971 K7EQD1 137 aa12.22□□□□□ -0.45
SHOX-204ENST00000554971 TIMM17BO60830 172 aa12.22□□□□□ -0.45
SHOX-204ENST00000554971 C16orf74Q96GX8 76 aa12.22□□□□□ -0.45
SHOX-204ENST00000554971 SPANXDQ9BXN6 97 aa12.22□□□□□ -0.45
SHOX-204ENST00000554971 SPANXCQ9NY87 97 aa12.22□□□□□ -0.45
SHOX-204ENST00000554971 LOC107984156A0A0G2JMH3 177 aa12.21□□□□□ -0.45
SHOX-204ENST00000554971 A4D1N5 150 aa12.21□□□□□ -0.45
SHOX-204ENST00000554971 CEMP1Q6PRD7 247 aaPredicted RBP12.21□□□□□ -0.45
SHOX-204ENST00000554971 ARL17AQ8IVW1 177 aa12.21□□□□□ -0.45
SHOX-204ENST00000554971 MUSTN1Q8IVN3 82 aa12.21□□□□□ -0.46
SHOX-204ENST00000554971 NDUFA12Q9UI09 145 aa12.21□□□□□ -0.46
SHOX-204ENST00000554971 CELA1Q9UNI1 258 aa12.21□□□□□ -0.46
SHOX-204ENST00000554971 ZFAND6Q6FIF0 208 aa12.2□□□□□ -0.46
SHOX-204ENST00000554971 Q6ZUT4 128 aa12.2□□□□□ -0.46
SHOX-204ENST00000554971 HERVK_113P63121 156 aa12.19□□□□□ -0.46
SHOX-204ENST00000554971 GTSF1LQ9H1H1 148 aa12.19□□□□□ -0.46
SHOX-204ENST00000554971 ERG28Q9UKR5 140 aa12.19□□□□□ -0.46
SHOX-204ENST00000554971 IGHV3-64A0A075B6Q5 118 aa12.19□□□□□ -0.46
SHOX-204ENST00000554971 LITAFQ99732 161 aa12.19□□□□□ -0.46
SHOX-204ENST00000554971 IGHV3-38A0A0C4DH36 116 aa12.18□□□□□ -0.46
SHOX-204ENST00000554971 H7C423 109 aa12.18□□□□□ -0.46
SHOX-204ENST00000554971 IGHV3-33P01772 117 aa12.18□□□□□ -0.46
SHOX-204ENST00000554971 IFITM1P13164 125 aa12.18□□□□□ -0.46
SHOX-204ENST00000554971 PSMB2P49721 201 aa12.18□□□□□ -0.46
SHOX-204ENST00000554971 ETDBQ3ZM63 59 aa12.18□□□□□ -0.46
SHOX-204ENST00000554971 M0QXV9 152 aa12.17□□□□□ -0.46
SHOX-204ENST00000554971 Q6ZTI0 123 aa12.17□□□□□ -0.46
SHOX-204ENST00000554971 TRAV8-3A0A0A6YYJ7 113 aa12.16□□□□□ -0.46
SHOX-204ENST00000554971 TRBV6-4A0A1B0GX49 114 aa12.16□□□□□ -0.46
SHOX-204ENST00000554971 SCGB1C2P0DMR2 95 aa12.16□□□□□ -0.46
SHOX-204ENST00000554971 WWC2-AS2Q96NR7 200 aa12.16□□□□□ -0.46
SHOX-204ENST00000554971 NDUFA1O15239 70 aa12.15□□□□□ -0.46
SHOX-204ENST00000554971 MIAQ16674 131 aa12.15□□□□□ -0.46
SHOX-204ENST00000554971 FAM222AQ5U5X8 452 aa12.15□□□□□ -0.46
SHOX-204ENST00000554971 KMT2CQ8NEZ4 4911 aaKnown RBP12.15□□□□□ -0.46
SHOX-204ENST00000554971 RNASE13Q5GAN3 156 aaKnown RBP12.15□□□□□ -0.46
SHOX-204ENST00000554971 NOP10Q9NPE3 64 aaKnown RBP12.15□□□□□ -0.46
SHOX-204ENST00000554971 IGLV5-39A0A0G2JS06 123 aa12.14□□□□□ -0.47
SHOX-204ENST00000554971 TCL1BO95988 128 aa12.14□□□□□ -0.47
SHOX-204ENST00000554971 NANOS2P60321 138 aaKnown RBP12.14□□□□□ -0.47
SHOX-204ENST00000554971 CIRBPQ14011 172 aaKnown RBP12.14□□□□□ -0.47
SHOX-204ENST00000554971 SH2D6Q7Z4S9 175 aa12.14□□□□□ -0.47
SHOX-204ENST00000554971 COPS9Q8WXC6 57 aa12.14□□□□□ -0.47
SHOX-204ENST00000554971 CDKN2A-AS1Q9UH64 79 aa12.14□□□□□ -0.47
SHOX-204ENST00000554971 SPINK8P0C7L1 97 aa12.13□□□□□ -0.47
SHOX-204ENST00000554971 TRBV30A0A0K0K1B3 111 aa12.13□□□□□ -0.47
SHOX-204ENST00000554971 LINC00242Q5T6M2 205 aa12.13□□□□□ -0.47
SHOX-204ENST00000554971 C11orf45Q8TAV5 145 aa12.13□□□□□ -0.47
SHOX-204ENST00000554971 TMEM101Q96IK0 257 aa12.13□□□□□ -0.47
SHOX-204ENST00000554971 SMCPP49901 116 aaPredicted RBP12.12□□□□□ -0.47
SHOX-204ENST00000554971 NTM-AS1Q6ZSK4 140 aa12.12□□□□□ -0.47
SHOX-204ENST00000554971 TRGV2A0A075B6R0 118 aa12.11□□□□□ -0.47
SHOX-204ENST00000554971 PRSS2P07478 247 aa12.11□□□□□ -0.47
SHOX-204ENST00000554971 TMEM243Q9BU79 118 aa12.11□□□□□ -0.47
SHOX-204ENST00000554971 PPDPFQ9H3Y8 114 aa12.11□□□□□ -0.47
SHOX-204ENST00000554971 CDC42SE2Q9NRR3 84 aa12.11□□□□□ -0.47
SHOX-204ENST00000554971 EIF4EBP3O60516 100 aaPredicted RBP12.11□□□□□ -0.47
SHOX-204ENST00000554971 SPART-AS1P0CW21 52 aa12.11□□□□□ -0.47
SHOX-204ENST00000554971 FOXI1Q12951 378 aa12.11□□□□□ -0.47
SHOX-204ENST00000554971 Q6ZTC4 211 aa12.11□□□□□ -0.47
SHOX-204ENST00000554971 LINC01600Q96MT4 127 aa12.11□□□□□ -0.47
SHOX-204ENST00000554971 TEN1Q86WV5 123 aa12.1□□□□□ -0.47
SHOX-204ENST00000554971 GAGE12HA6NDE8 117 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 GAGE12JA6NER3 117 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 LYRM9A8MSI8 78 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 GAGE4Q13068 117 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 GAGE5Q13069 117 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 ADAMTSL4-AS1Q5T5F5 129 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 LINC00612Q8N6U2 182 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 MUC7Q8TAX7 377 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 SACSQ9NZJ4 4579 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 UBE2L6O14933 153 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 SCGB1A1P11684 91 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 ATXN8Q156A1 80 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 PPDPFLQ8WWR9 84 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 SIGMAR1Q99720 223 aa12.09□□□□□ -0.47
SHOX-204ENST00000554971 DNAH1Q9P2D7 4330 aa12.08□□□□□ -0.47
SHOX-204ENST00000554971 LINC00694P0DN24 101 aa12.08□□□□□ -0.48
SHOX-204ENST00000554971 DEFB130BP0DP73 79 aa12.08□□□□□ -0.48
SHOX-204ENST00000554971 DEFB130AP0DP74 79 aa12.08□□□□□ -0.48
SHOX-204ENST00000554971 SFTA2Q6UW10 78 aa12.08□□□□□ -0.48
SHOX-204ENST00000554971 GAGE7O76087 117 aa12.07□□□□□ -0.48
SHOX-204ENST00000554971 COX6CP09669 75 aa12.07□□□□□ -0.48
SHOX-204ENST00000554971 GAGE12FP0CL80 117 aa12.07□□□□□ -0.48
SHOX-204ENST00000554971 GAGE12GP0CL81 117 aa12.07□□□□□ -0.48
SHOX-204ENST00000554971 GAGE12IP0CL82 117 aa12.07□□□□□ -0.48
SHOX-204ENST00000554971 HERV-K104P63124 156 aa12.07□□□□□ -0.48
SHOX-204ENST00000554971 COX6A2Q02221 97 aa12.07□□□□□ -0.48
SHOX-204ENST00000554971 VPS13DQ5THJ4 4388 aa12.07□□□□□ -0.48
SHOX-204ENST00000554971 C21orf62-AS1Q17RA5 79 aa12.07□□□□□ -0.48
SHOX-204ENST00000554971 Q1RN00 199 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms