RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 IMMP2LQ96T52 175 aa7.53□□□□□ -1.2
SCAF11-208ENST00000546534 MRPL35Q9NZE8 188 aaKnown RBP7.53□□□□□ -1.2
SCAF11-208ENST00000546534 POLR2KP53803 58 aaKnown RBP7.52□□□□□ -1.21
SCAF11-208ENST00000546534 C10orf25Q5T742 122 aa7.52□□□□□ -1.21
SCAF11-208ENST00000546534 OR10D4PQ8NGN7 298 aa7.52□□□□□ -1.21
SCAF11-208ENST00000546534 TRBV27A0A0K0K1C4 114 aa7.51□□□□□ -1.21
SCAF11-208ENST00000546534 M0QXV9 152 aa7.51□□□□□ -1.21
SCAF11-208ENST00000546534 GAGE2EQ4V326 116 aa7.51□□□□□ -1.21
SCAF11-208ENST00000546534 LCE5AQ5TCM9 118 aa7.51□□□□□ -1.21
SCAF11-208ENST00000546534 MED9Q9NWA0 146 aa7.51□□□□□ -1.21
SCAF11-208ENST00000546534 GAGE2DQ9UEU5 116 aa7.51□□□□□ -1.21
SCAF11-208ENST00000546534 UBE2D4Q9Y2X8 147 aa7.51□□□□□ -1.21
SCAF11-208ENST00000546534 SMLR1H3BR10 107 aa7.5□□□□□ -1.21
SCAF11-208ENST00000546534 PDE6DO43924 150 aa7.5□□□□□ -1.21
SCAF11-208ENST00000546534 TLX1NBP0CAT3 122 aa7.5□□□□□ -1.21
SCAF11-208ENST00000546534 UNQ6190/PRO20217Q6UXQ8 127 aa7.5□□□□□ -1.21
SCAF11-208ENST00000546534 ORAOV1Q8WV07 137 aa7.5□□□□□ -1.21
SCAF11-208ENST00000546534 CSDC2Q9Y534 153 aaKnown RBP7.5□□□□□ -1.21
SCAF11-208ENST00000546534 F8WDY8 70 aa7.49□□□□□ -1.21
SCAF11-208ENST00000546534 K7EN84 100 aa7.49□□□□□ -1.21
SCAF11-208ENST00000546534 NDUFA1O15239 70 aa7.49□□□□□ -1.21
SCAF11-208ENST00000546534 ZNF345Q14585 488 aa7.49□□□□□ -1.21
SCAF11-208ENST00000546534 Q6ZUT4 128 aa7.49□□□□□ -1.21
SCAF11-208ENST00000546534 SMDT1Q9H4I9 107 aa7.49□□□□□ -1.21
SCAF11-208ENST00000546534 C6orf48Q9UBA6 75 aa7.49□□□□□ -1.21
SCAF11-208ENST00000546534 ZNF861PO60384 105 aa7.48□□□□□ -1.21
SCAF11-208ENST00000546534 FCER1GP30273 86 aa7.48□□□□□ -1.21
SCAF11-208ENST00000546534 TMEM241Q24JQ0 296 aa7.48□□□□□ -1.21
SCAF11-208ENST00000546534 OCC1Q8TAD7 63 aa7.48□□□□□ -1.21
SCAF11-208ENST00000546534 KRTAP9-3Q9BYQ3 159 aa7.48□□□□□ -1.21
SCAF11-208ENST00000546534 A0A087X002 238 aa7.47□□□□□ -1.21
SCAF11-208ENST00000546534 RETNLBQ9BQ08 111 aa7.47□□□□□ -1.21
SCAF11-208ENST00000546534 IGHV3OR16-9A0A0B4J2B5 98 aa7.46□□□□□ -1.22
SCAF11-208ENST00000546534 VCYO14598 125 aa7.46□□□□□ -1.22
SCAF11-208ENST00000546534 SMAGPQ0VAQ4 97 aa7.46□□□□□ -1.22
SCAF11-208ENST00000546534 CRCT1Q9UGL9 99 aa7.46□□□□□ -1.22
SCAF11-208ENST00000546534 KANTRA0A1W2PQU2 76 aa7.45□□□□□ -1.22
SCAF11-208ENST00000546534 RAB4AP20338 218 aa7.45□□□□□ -1.22
SCAF11-208ENST00000546534 C9orf129Q5T035 196 aaKnown RBP7.45□□□□□ -1.22
SCAF11-208ENST00000546534 TYMSOSQ8TAI1 123 aa7.45□□□□□ -1.22
SCAF11-208ENST00000546534 TIMM21Q9BVV7 248 aa7.45□□□□□ -1.22
SCAF11-208ENST00000546534 A8MWL6 223 aa7.44□□□□□ -1.22
SCAF11-208ENST00000546534 SMKR1H3BMG3 65 aa7.44□□□□□ -1.22
SCAF11-208ENST00000546534 TEX46H3BTG2 121 aa7.44□□□□□ -1.22
SCAF11-208ENST00000546534 GATCO43716 136 aaKnown RBP7.44□□□□□ -1.22
SCAF11-208ENST00000546534 TMEM191AQ9H0A3 160 aa7.44□□□□□ -1.22
SCAF11-208ENST00000546534 MUC17Q685J3 4493 aa7.44□□□□□ -1.22
SCAF11-208ENST00000546534 CRYGAP11844 174 aa7.43□□□□□ -1.22
SCAF11-208ENST00000546534 KIAA0087Q14695 138 aa7.43□□□□□ -1.22
SCAF11-208ENST00000546534 TPRXLQ17RH7 258 aa7.43□□□□□ -1.22
SCAF11-208ENST00000546534 AMN1Q8IY45 258 aa7.43□□□□□ -1.22
SCAF11-208ENST00000546534 FAM104AQ969W3 186 aa7.43□□□□□ -1.22
SCAF11-208ENST00000546534 HMSDA8MTL9 139 aa7.42□□□□□ -1.22
SCAF11-208ENST00000546534 NDUFC2-KCTD14E9PQ53 114 aa7.42□□□□□ -1.22
SCAF11-208ENST00000546534 BORCS7Q96B45 105 aa7.42□□□□□ -1.22
SCAF11-208ENST00000546534 KIR2DL4Q99706 377 aa7.42□□□□□ -1.22
SCAF11-208ENST00000546534 A0A1B0GUT8 65 aa7.41□□□□□ -1.22
SCAF11-208ENST00000546534 SUMO2P61956 95 aaKnown RBP7.41□□□□□ -1.22
SCAF11-208ENST00000546534 C2orf82Q6UX34 121 aa7.41□□□□□ -1.22
SCAF11-208ENST00000546534 NRACQ8N912 160 aa7.41□□□□□ -1.22
SCAF11-208ENST00000546534 TMEM18Q96B42 140 aa7.41□□□□□ -1.22
SCAF11-208ENST00000546534 KRTAP9-8Q9BYQ0 159 aa7.41□□□□□ -1.22
SCAF11-208ENST00000546534 CTDSP1Q9GZU7 261 aa7.41□□□□□ -1.22
SCAF11-208ENST00000546534 ANAPC11Q9NYG5 84 aa7.41□□□□□ -1.22
SCAF11-208ENST00000546534 FSIP2Q5CZC0 6907 aa7.4□□□□□ -1.22
SCAF11-208ENST00000546534 TRBV30A0A0K0K1B3 111 aa7.4□□□□□ -1.22
SCAF11-208ENST00000546534 NUPR1O60356 82 aa7.4□□□□□ -1.22
SCAF11-208ENST00000546534 RPL39P62891 51 aaKnown RBP7.4□□□□□ -1.22
SCAF11-208ENST00000546534 FAM231DQ6ZW35 169 aa7.4□□□□□ -1.22
SCAF11-208ENST00000546534 IGLV7-46A0A075B6I9 117 aa7.39□□□□□ -1.23
SCAF11-208ENST00000546534 KRTAP13-2Q52LG2 175 aa7.39□□□□□ -1.23
SCAF11-208ENST00000546534 C22orf24Q9Y442 160 aa7.39□□□□□ -1.23
SCAF11-208ENST00000546534 IFITM10A6NMD0 228 aa7.38□□□□□ -1.23
SCAF11-208ENST00000546534 HIGD1CA8MV81 97 aa7.38□□□□□ -1.23
SCAF11-208ENST00000546534 PPP1R17O96001 155 aa7.38□□□□□ -1.23
SCAF11-208ENST00000546534 RPL28P46779 137 aaKnown RBP7.38□□□□□ -1.23
SCAF11-208ENST00000546534 TAGLN2P37802 199 aaKnown RBP7.37□□□□□ -1.23
SCAF11-208ENST00000546534 LINC00173Q6ZV60 143 aa7.37□□□□□ -1.23
SCAF11-208ENST00000546534 PACRGQ96M98 296 aaPredicted RBP7.37□□□□□ -1.23
SCAF11-208ENST00000546534 TGIF2-C20orf24A0A0A6YYL0 155 aa7.36□□□□□ -1.23
SCAF11-208ENST00000546534 PPP1R2P9O14990 202 aa7.36□□□□□ -1.23
SCAF11-208ENST00000546534 BCE1O60756 84 aa7.36□□□□□ -1.23
SCAF11-208ENST00000546534 HBBP68871 147 aa7.36□□□□□ -1.23
SCAF11-208ENST00000546534 MRPS36P82909 103 aaKnown RBP7.36□□□□□ -1.23
SCAF11-208ENST00000546534 LBHQ53QV2 105 aaPredicted RBP7.36□□□□□ -1.23
SCAF11-208ENST00000546534 LINC00469Q8N7U9 141 aa7.36□□□□□ -1.23
SCAF11-208ENST00000546534 LINC00304Q8N9R0 145 aa7.36□□□□□ -1.23
SCAF11-208ENST00000546534 SPANXA1Q9NS26 97 aa7.36□□□□□ -1.23
SCAF11-208ENST00000546534 LINC01547P58512 204 aaPredicted RBP7.35□□□□□ -1.23
SCAF11-208ENST00000546534 LINC00242Q5T6M2 205 aa7.35□□□□□ -1.23
SCAF11-208ENST00000546534 ZNF727A8MUV8 499 aa7.34□□□□□ -1.23
SCAF11-208ENST00000546534 C20orf78Q9BR46 151 aa7.34□□□□□ -1.23
SCAF11-208ENST00000546534 XAGE1AQ9HD64 81 aa7.34□□□□□ -1.23
SCAF11-208ENST00000546534 RIGQ13278 110 aa7.33□□□□□ -1.24
SCAF11-208ENST00000546534 MRPL51Q4U2R6 128 aaKnown RBP7.33□□□□□ -1.24
SCAF11-208ENST00000546534 PPDPFQ9H3Y8 114 aa7.33□□□□□ -1.24
SCAF11-208ENST00000546534 TMEM250H0YL14 139 aa7.32□□□□□ -1.24
SCAF11-208ENST00000546534 TCAPO15273 167 aa7.32□□□□□ -1.24
SCAF11-208ENST00000546534 RPL32P62910 135 aaKnown RBP7.32□□□□□ -1.24
SCAF11-208ENST00000546534 FAM104BQ5XKR9 115 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms