RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 HIST1H4AP62805 103 aaKnown RBP10.6□□□□□ -0.71
HOXC11-202ENST00000546378 C9orf153Q5TBE3 101 aa10.6□□□□□ -0.71
HOXC11-202ENST00000546378 UBE2D4Q9Y2X8 147 aa10.6□□□□□ -0.71
HOXC11-202ENST00000546378 ZNF415Q09FC8 603 aa10.6□□□□□ -0.71
HOXC11-202ENST00000546378 WFDC9Q8NEX5 89 aa10.6□□□□□ -0.71
HOXC11-202ENST00000546378 FAM19A4Q96LR4 140 aa10.6□□□□□ -0.71
HOXC11-202ENST00000546378 A0A087WVE0 104 aa10.59□□□□□ -0.71
HOXC11-202ENST00000546378 PSMB8P28062 276 aa10.59□□□□□ -0.71
HOXC11-202ENST00000546378 RPL32P62910 135 aaKnown RBP10.59□□□□□ -0.71
HOXC11-202ENST00000546378 LOC107984640A0A0U1RRK4 108 aa10.59□□□□□ -0.71
HOXC11-202ENST00000546378 J3QLI3 93 aa10.59□□□□□ -0.71
HOXC11-202ENST00000546378 DEFB4AO15263 64 aa10.59□□□□□ -0.71
HOXC11-202ENST00000546378 LINC00308Q8TCZ7 52 aa10.59□□□□□ -0.71
HOXC11-202ENST00000546378 IGLV10-54A0A075B6I4 117 aa10.59□□□□□ -0.71
HOXC11-202ENST00000546378 LINC01619G3V211 115 aa10.59□□□□□ -0.71
HOXC11-202ENST00000546378 KRTAP1-3Q8IUG1 177 aa10.59□□□□□ -0.71
HOXC11-202ENST00000546378 IGLV1-40P01703 118 aa10.58□□□□□ -0.72
HOXC11-202ENST00000546378 PRR3P79522 188 aaKnown RBP10.58□□□□□ -0.72
HOXC11-202ENST00000546378 SOSTDC1Q6X4U4 206 aa10.58□□□□□ -0.72
HOXC11-202ENST00000546378 MIR7-3HGQ8N6C7 128 aa10.58□□□□□ -0.72
HOXC11-202ENST00000546378 CITED1Q99966 193 aa10.58□□□□□ -0.72
HOXC11-202ENST00000546378 CHCHD7Q9BUK0 85 aa10.58□□□□□ -0.72
HOXC11-202ENST00000546378 LRRC75A-AS1Q8N1F1 130 aa10.58□□□□□ -0.72
HOXC11-202ENST00000546378 LITAFQ99732 161 aa10.58□□□□□ -0.72
HOXC11-202ENST00000546378 MED14OSP0DP75 135 aa10.57□□□□□ -0.72
HOXC11-202ENST00000546378 FAM218AQ96MZ4 157 aa10.57□□□□□ -0.72
HOXC11-202ENST00000546378 XCL1P47992 114 aa10.57□□□□□ -0.72
HOXC11-202ENST00000546378 VPREB3Q9UKI3 123 aa10.57□□□□□ -0.72
HOXC11-202ENST00000546378 TRBV6-5A0A0K0K1A5 114 aa10.56□□□□□ -0.72
HOXC11-202ENST00000546378 TRBV30A0A0K0K1B3 111 aa10.56□□□□□ -0.72
HOXC11-202ENST00000546378 CFAP161Q6P656 301 aa10.56□□□□□ -0.72
HOXC11-202ENST00000546378 CITED2Q99967 270 aaPredicted RBP10.56□□□□□ -0.72
HOXC11-202ENST00000546378 TRGV4A0A0C4DH28 118 aa10.56□□□□□ -0.72
HOXC11-202ENST00000546378 LINC00526Q96FQ7 95 aa10.56□□□□□ -0.72
HOXC11-202ENST00000546378 VWFP04275 2813 aa10.56□□□□□ -0.72
HOXC11-202ENST00000546378 CR1P17927 2039 aa10.56□□□□□ -0.72
HOXC11-202ENST00000546378 MRPS36P82909 103 aaKnown RBP10.55□□□□□ -0.72
HOXC11-202ENST00000546378 LST1O00453 97 aa10.55□□□□□ -0.72
HOXC11-202ENST00000546378 NCR3O14931 201 aa10.55□□□□□ -0.72
HOXC11-202ENST00000546378 CRPP02741 224 aa10.55□□□□□ -0.72
HOXC11-202ENST00000546378 LINC00242Q5T6M2 205 aa10.55□□□□□ -0.72
HOXC11-202ENST00000546378 RPL36AP83881 106 aaKnown RBP10.54□□□□□ -0.72
HOXC11-202ENST00000546378 RPL36ALQ969Q0 106 aaKnown RBP10.54□□□□□ -0.72
HOXC11-202ENST00000546378 HTN3P15516 51 aa10.54□□□□□ -0.72
HOXC11-202ENST00000546378 FAM104AQ969W3 186 aa10.54□□□□□ -0.72
HOXC11-202ENST00000546378 NBEAL1Q6ZS30 2694 aa10.54□□□□□ -0.72
HOXC11-202ENST00000546378 LECT2O14960 151 aa10.53□□□□□ -0.72
HOXC11-202ENST00000546378 MAP6D1Q9H9H5 199 aa10.53□□□□□ -0.72
HOXC11-202ENST00000546378 INSP01308 110 aa10.53□□□□□ -0.72
HOXC11-202ENST00000546378 C9orf129Q5T035 196 aaKnown RBP10.53□□□□□ -0.72
HOXC11-202ENST00000546378 Q6YL49 198 aa10.53□□□□□ -0.72
HOXC11-202ENST00000546378 SMCR5Q8TEV8 140 aa10.53□□□□□ -0.72
HOXC11-202ENST00000546378 PPDPFQ9H3Y8 114 aa10.53□□□□□ -0.72
HOXC11-202ENST00000546378 SND1-IT1Q9HBX3 110 aa10.52□□□□□ -0.73
HOXC11-202ENST00000546378 TIRAPP58753 221 aa10.51□□□□□ -0.73
HOXC11-202ENST00000546378 SBSPONQ8IVN8 264 aa10.51□□□□□ -0.73
HOXC11-202ENST00000546378 BAHCC1Q9P281 2608 aa10.51□□□□□ -0.73
HOXC11-202ENST00000546378 K7EMT4 169 aa10.51□□□□□ -0.73
HOXC11-202ENST00000546378 A0A087WYN8 130 aa10.5□□□□□ -0.73
HOXC11-202ENST00000546378 hADV29S1A0JD25 119 aa10.5□□□□□ -0.73
HOXC11-202ENST00000546378 C6orf226Q5I0X4 101 aa10.5□□□□□ -0.73
HOXC11-202ENST00000546378 A8MTW9 85 aa10.49□□□□□ -0.73
HOXC11-202ENST00000546378 OTOGQ6ZRI0 2925 aa10.49□□□□□ -0.73
HOXC11-202ENST00000546378 SPANXA1Q9NS26 97 aa10.48□□□□□ -0.73
HOXC11-202ENST00000546378 SMIM1B2RUZ4 78 aa10.48□□□□□ -0.73
HOXC11-202ENST00000546378 NTM-AS1Q6ZSK4 140 aa10.48□□□□□ -0.73
HOXC11-202ENST00000546378 H3BT86 120 aa10.48□□□□□ -0.73
HOXC11-202ENST00000546378 IGLV4-60A0A075B6I1 120 aa10.47□□□□□ -0.73
HOXC11-202ENST00000546378 ZNF702PQ9H963 129 aa10.47□□□□□ -0.73
HOXC11-202ENST00000546378 DNAJC9-AS1A6NH13 148 aa10.47□□□□□ -0.73
HOXC11-202ENST00000546378 HERVK_113P63121 156 aa10.47□□□□□ -0.73
HOXC11-202ENST00000546378 COX7A2LO14548 114 aa10.46□□□□□ -0.73
HOXC11-202ENST00000546378 H3BUA1 57 aa10.46□□□□□ -0.73
HOXC11-202ENST00000546378 LINC00337Q8N6G1 96 aa10.46□□□□□ -0.74
HOXC11-202ENST00000546378 C9orf116Q5BN46 136 aaPredicted RBP10.45□□□□□ -0.74
HOXC11-202ENST00000546378 NOTCH1P46531 2555 aa10.45□□□□□ -0.74
HOXC11-202ENST00000546378 A0A1B0GX51 115 aa10.45□□□□□ -0.74
HOXC11-202ENST00000546378 FSHBP01225 129 aa10.45□□□□□ -0.74
HOXC11-202ENST00000546378 TMEM243Q9BU79 118 aa10.45□□□□□ -0.74
HOXC11-202ENST00000546378 PEMTQ9UBM1 199 aa10.45□□□□□ -0.74
HOXC11-202ENST00000546378 NDUFA1O15239 70 aa10.44□□□□□ -0.74
HOXC11-202ENST00000546378 Q8N3U1 123 aa10.44□□□□□ -0.74
HOXC11-202ENST00000546378 SPANXDQ9BXN6 97 aa10.44□□□□□ -0.74
HOXC11-202ENST00000546378 SPANXCQ9NY87 97 aa10.44□□□□□ -0.74
HOXC11-202ENST00000546378 ODF3L2Q3SX64 289 aa10.44□□□□□ -0.74
HOXC11-202ENST00000546378 SMIM11BQ8TCY0 68 aa10.43□□□□□ -0.74
HOXC11-202ENST00000546378 K7EQD1 137 aa10.43□□□□□ -0.74
HOXC11-202ENST00000546378 HILS1P60008 231 aa10.43□□□□□ -0.74
HOXC11-202ENST00000546378 C1orf158Q8N1D5 194 aa10.43□□□□□ -0.74
HOXC11-202ENST00000546378 PYGO1Q9Y3Y4 419 aa10.43□□□□□ -0.74
HOXC11-202ENST00000546378 TRAV23DV6A0A075B6W5 121 aa10.42□□□□□ -0.74
HOXC11-202ENST00000546378 LY6G6DO95868 133 aa10.42□□□□□ -0.74
HOXC11-202ENST00000546378 MALP21145 153 aa10.42□□□□□ -0.74
HOXC11-202ENST00000546378 DEFB114Q30KQ6 69 aa10.41□□□□□ -0.74
HOXC11-202ENST00000546378 INAFM1C9JVW0 142 aa10.41□□□□□ -0.74
HOXC11-202ENST00000546378 COX7B2Q8TF08 81 aa10.41□□□□□ -0.74
HOXC11-202ENST00000546378 TMEM89A2RUT3 159 aa10.41□□□□□ -0.74
HOXC11-202ENST00000546378 KRTAP1-1Q07627 177 aa10.41□□□□□ -0.74
HOXC11-202ENST00000546378 M0QXV9 152 aa10.4□□□□□ -0.74
HOXC11-202ENST00000546378 C11orf72Q8NBR9 251 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms