RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 LINC00959A0A1B0GUT2 108 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 LECT2O14960 151 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 CCL25O15444 150 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 OXTP01178 125 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 LINC00614P0C842 121 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 SNRPEP62304 92 aaKnown RBP5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 LINC01620Q4KN68 170 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 PDZD11Q5EBL8 140 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 Q6ZUT4 128 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 FAM104AQ969W3 186 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 TOMM6Q96B49 74 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 AP5S1Q9NUS5 200 aa5.7□□□□□ -1.5
CLSTN3-212ENST00000541770 C5orf52A6NGY3 159 aa5.69□□□□□ -1.5
CLSTN3-212ENST00000541770 IGIPA6NJ69 53 aa5.69□□□□□ -1.5
CLSTN3-212ENST00000541770 WFDC2Q14508 124 aa5.69□□□□□ -1.5
CLSTN3-212ENST00000541770 SCXQ7RTU7 201 aa5.69□□□□□ -1.5
CLSTN3-212ENST00000541770 URB1-AS1Q96HZ7 61 aa5.69□□□□□ -1.5
CLSTN3-212ENST00000541770 TIMM17AQ99595 171 aa5.69□□□□□ -1.5
CLSTN3-212ENST00000541770 IGLV10-54A0A075B6I4 117 aa5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 IGLV4-3A0A075B6K6 122 aa5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 IGKV3OR2-268A0A0C4DH90 116 aa5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 LOC105371267A0A1B0GV96 52 aa5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 SERF1AO75920 110 aa5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 SS18Q15532 418 aa5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 COA6Q5JTJ3 125 aaKnown RBP5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 Q6ZSA8 131 aa5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 ERASQ7Z444 233 aa5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 CHCHD10Q8WYQ3 142 aaPredicted RBP5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 TMEM141Q96I45 108 aa5.68□□□□□ -1.5
CLSTN3-212ENST00000541770 S100A2P29034 98 aa5.67□□□□□ -1.5
CLSTN3-212ENST00000541770 RNASE13Q5GAN3 156 aaKnown RBP5.67□□□□□ -1.5
CLSTN3-212ENST00000541770 PAPPA-AS1Q5QFB9 102 aa5.67□□□□□ -1.5
CLSTN3-212ENST00000541770 CD164L2Q6UWJ8 174 aa5.67□□□□□ -1.5
CLSTN3-212ENST00000541770 Q6ZN92 141 aa5.67□□□□□ -1.5
CLSTN3-212ENST00000541770 BAALCQ8WXS3 180 aa5.67□□□□□ -1.5
CLSTN3-212ENST00000541770 CHCHD1Q96BP2 118 aaKnown RBP5.67□□□□□ -1.5
CLSTN3-212ENST00000541770 AMELXQ99217 191 aa5.67□□□□□ -1.5
CLSTN3-212ENST00000541770 OPRPNQ99935 248 aaPredicted RBP5.67□□□□□ -1.5
CLSTN3-212ENST00000541770 HMCN2Q8NDA2 5059 aa5.66□□□□□ -1.5
CLSTN3-212ENST00000541770 A0A096LNJ9 63 aa5.66□□□□□ -1.5
CLSTN3-212ENST00000541770 TRAV13-1A0A0B4J241 112 aa5.66□□□□□ -1.5
CLSTN3-212ENST00000541770 GAGE12HA6NDE8 117 aa5.66□□□□□ -1.5
CLSTN3-212ENST00000541770 FOXI1Q12951 378 aa5.66□□□□□ -1.5
CLSTN3-212ENST00000541770 C14orf177Q52M58 125 aa5.66□□□□□ -1.5
CLSTN3-212ENST00000541770 TEX43Q6ZNM6 134 aa5.66□□□□□ -1.5
CLSTN3-212ENST00000541770 SCGB3A1Q96QR1 104 aa5.66□□□□□ -1.5
CLSTN3-212ENST00000541770 VCX2Q9H322 139 aa5.66□□□□□ -1.5
CLSTN3-212ENST00000541770 IFITM10A6NMD0 228 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 USP17L23D6RBM5 183 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 NUPR1O60356 82 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 HSBP1O75506 76 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 HBDP02042 147 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 XCL1P47992 114 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 LINC00310P59036 64 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 PMCHL1Q16048 86 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 CFAP161Q6P656 301 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 LINC00173Q6ZV60 143 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 HIST3H2BBQ8N257 126 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 CIRBP-AS1Q8TBR5 109 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 C2orf88Q9BSF0 95 aa5.65□□□□□ -1.5
CLSTN3-212ENST00000541770 LRP1Q07954 4544 aaKnown RBP5.65□□□□□ -1.51
CLSTN3-212ENST00000541770 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.64□□□□□ -1.51
CLSTN3-212ENST00000541770 FABP4P15090 132 aa5.64□□□□□ -1.51
CLSTN3-212ENST00000541770 UBE2D1P51668 147 aa5.64□□□□□ -1.51
CLSTN3-212ENST00000541770 AKR1D1P51857 326 aa5.64□□□□□ -1.51
CLSTN3-212ENST00000541770 KRTAP10-4P60372 401 aaPredicted RBP5.64□□□□□ -1.51
CLSTN3-212ENST00000541770 FAM19A3Q7Z5A8 133 aa5.64□□□□□ -1.51
CLSTN3-212ENST00000541770 FAM19A2Q8N3H0 131 aa5.64□□□□□ -1.51
CLSTN3-212ENST00000541770 CHAC1Q9BUX1 264 aa5.64□□□□□ -1.51
CLSTN3-212ENST00000541770 DNAH8Q96JB1 4490 aa5.63□□□□□ -1.51
CLSTN3-212ENST00000541770 IGHV3OR16-9A0A0B4J2B5 98 aa5.63□□□□□ -1.51
CLSTN3-212ENST00000541770 ATP5LO75964 103 aa5.63□□□□□ -1.51
CLSTN3-212ENST00000541770 RPL37AP61513 92 aaKnown RBP5.63□□□□□ -1.51
CLSTN3-212ENST00000541770 LINC00242Q5T6M2 205 aa5.63□□□□□ -1.51
CLSTN3-212ENST00000541770 C15orf56Q8N910 161 aa5.63□□□□□ -1.51
CLSTN3-212ENST00000541770 IGHV1-58A0A0C4DH39 117 aa5.62□□□□□ -1.51
CLSTN3-212ENST00000541770 COX7A2LO14548 114 aa5.62□□□□□ -1.51
CLSTN3-212ENST00000541770 PRSS1P07477 247 aa5.62□□□□□ -1.51
CLSTN3-212ENST00000541770 SEC11AP67812 179 aa5.62□□□□□ -1.51
CLSTN3-212ENST00000541770 PMVKQ15126 192 aa5.62□□□□□ -1.51
CLSTN3-212ENST00000541770 ZC2HC1BQ5TFG8 222 aa5.62□□□□□ -1.51
CLSTN3-212ENST00000541770 PACRGQ96M98 296 aaPredicted RBP5.62□□□□□ -1.51
CLSTN3-212ENST00000541770 HIST1H2BLQ99880 126 aa5.62□□□□□ -1.51
CLSTN3-212ENST00000541770 GVQW2A0A096LPI5 108 aaPredicted RBP5.61□□□□□ -1.51
CLSTN3-212ENST00000541770 hDV102S1A0JD36 115 aa5.61□□□□□ -1.51
CLSTN3-212ENST00000541770 APOMO95445 188 aa5.61□□□□□ -1.51
CLSTN3-212ENST00000541770 HERVK_113P63121 156 aa5.61□□□□□ -1.51
CLSTN3-212ENST00000541770 LINC01561Q8N1V8 128 aa5.61□□□□□ -1.51
CLSTN3-212ENST00000541770 OR10D4PQ8NGN7 298 aa5.61□□□□□ -1.51
CLSTN3-212ENST00000541770 CST9LQ9H4G1 147 aa5.61□□□□□ -1.51
CLSTN3-212ENST00000541770 FAT3Q8TDW7 4589 aa5.6□□□□□ -1.51
CLSTN3-212ENST00000541770 A0A087WZ39 114 aa5.6□□□□□ -1.51
CLSTN3-212ENST00000541770 TINCRA0A1B0GVN0 87 aa5.6□□□□□ -1.51
CLSTN3-212ENST00000541770 MALP21145 153 aa5.6□□□□□ -1.51
CLSTN3-212ENST00000541770 HNRNPA3P51991 378 aaKnown RBP5.6□□□□□ -1.51
CLSTN3-212ENST00000541770 CNBPP62633 177 aaKnown RBP5.6□□□□□ -1.51
CLSTN3-212ENST00000541770 COX6A2Q02221 97 aa5.6□□□□□ -1.51
CLSTN3-212ENST00000541770 C5orf38Q86SI9 138 aa5.6□□□□□ -1.51
CLSTN3-212ENST00000541770 IFI27L1Q96BM0 104 aa5.6□□□□□ -1.51
CLSTN3-212ENST00000541770 IGHV3-64A0A075B6Q5 118 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms