RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 A0A1W2PNN7 141 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 IGIPA6NJ69 53 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 KRTAP29-1A8MX34 341 aaPredicted RBP3.16□□□□□ -1.9
USH1C-210ENST00000534556 C1orf196B1AJZ1 125 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.16□□□□□ -1.9
USH1C-210ENST00000534556 COX7A2LO14548 114 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 PLA2G1BP04054 148 aaKnown RBP3.16□□□□□ -1.9
USH1C-210ENST00000534556 S100A8P05109 93 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 UBE2D1P51668 147 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 RPL37AP61513 92 aaKnown RBP3.16□□□□□ -1.9
USH1C-210ENST00000534556 ODF1Q14990 250 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 CFAP161Q6P656 301 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 CARD19Q96LW7 228 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 YPEL4Q96NS1 127 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 AMELXQ99217 191 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 ALKBH7Q9BT30 221 aaPredicted RBP3.16□□□□□ -1.9
USH1C-210ENST00000534556 CTDSP1Q9GZU7 261 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 SPANXA1Q9NS26 97 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 AP5S1Q9NUS5 200 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 PYGO1Q9Y3Y4 419 aa3.16□□□□□ -1.9
USH1C-210ENST00000534556 A0A096LNJ9 63 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.15□□□□□ -1.91
USH1C-210ENST00000534556 TGIF2-C20orf24A0A0A6YYL0 155 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 LINC01546A6NGU7 62 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 IFITM10A6NMD0 228 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 SYCNQ0VAF6 134 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 MAJINQ3KP22 176 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 C2orf66Q6UXQ4 117 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 UNQ6190/PRO20217Q6UXQ8 127 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 STPG4Q8N801 248 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 MAP1LC3AQ9H492 121 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 C6orf48Q9UBA6 75 aa3.15□□□□□ -1.91
USH1C-210ENST00000534556 LRP2P98164 4655 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 TRAV9-1A0A075B6T8 112 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 A0A087WZ39 114 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 FAM168BA1KXE4 195 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 PTTG1IPP53801 180 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 SPAG11BQ08648 103 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 C9orf116Q5BN46 136 aaPredicted RBP3.14□□□□□ -1.91
USH1C-210ENST00000534556 C2orf82Q6UX34 121 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 FAM19A3Q7Z5A8 133 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 ORAOV1Q8WV07 137 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 TMEM18Q96B42 140 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 TMEM141Q96I45 108 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 C2orf48Q96LS8 159 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 GNB1LQ9BYB4 327 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 MRPL18Q9H0U6 180 aaKnown RBP3.14□□□□□ -1.91
USH1C-210ENST00000534556 RPS10P5Q9NQ39 176 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 LAMTOR2Q9Y2Q5 125 aa3.14□□□□□ -1.91
USH1C-210ENST00000534556 ZNF561-AS1K7EIQ3 104 aa3.13□□□□□ -1.91
USH1C-210ENST00000534556 RAB5AP20339 215 aa3.13□□□□□ -1.91
USH1C-210ENST00000534556 MALP21145 153 aa3.13□□□□□ -1.91
USH1C-210ENST00000534556 PRR3P79522 188 aaKnown RBP3.13□□□□□ -1.91
USH1C-210ENST00000534556 GAGE2BQ13066 116 aa3.13□□□□□ -1.91
USH1C-210ENST00000534556 Q6ZRP5 223 aa3.13□□□□□ -1.91
USH1C-210ENST00000534556 PHF5AQ7RTV0 110 aaKnown RBP3.13□□□□□ -1.91
USH1C-210ENST00000534556 TOMM6Q96B49 74 aa3.13□□□□□ -1.91
USH1C-210ENST00000534556 CAMK2N2Q96S95 79 aa3.13□□□□□ -1.91
USH1C-210ENST00000534556 NXT2Q9NPJ8 142 aaKnown RBP3.13□□□□□ -1.91
USH1C-210ENST00000534556 CDKN2A-AS1Q9UH64 79 aa3.13□□□□□ -1.91
USH1C-210ENST00000534556 CYSLTR1Q9Y271 337 aa3.13□□□□□ -1.91
USH1C-210ENST00000534556 LOC107984640A0A0U1RRK4 108 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 APOMO95445 188 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 APOC3P02656 99 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 SMAGPQ0VAQ4 97 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 FABP9Q0Z7S8 132 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 SRSF9Q13242 221 aaKnown RBP eCLIP3.12□□□□□ -1.91
USH1C-210ENST00000534556 RHEBQ15382 184 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 ORMDL2Q53FV1 153 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 C9orf129Q5T035 196 aaKnown RBP3.12□□□□□ -1.91
USH1C-210ENST00000534556 SLC7A5P1Q8MH63 180 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 OR10D4PQ8NGN7 298 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 C18orf32Q8TCD1 76 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 DPH3Q96FX2 82 aa3.12□□□□□ -1.91
USH1C-210ENST00000534556 MRPL35Q9NZE8 188 aaKnown RBP3.12□□□□□ -1.91
USH1C-210ENST00000534556 LPAP08519 4548 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 OXTP01178 125 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 TLX1NBP0CAT3 122 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 RPL18AQ02543 176 aaKnown RBP3.11□□□□□ -1.91
USH1C-210ENST00000534556 PMCHL1Q16048 86 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 RNF151Q2KHN1 245 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 TEX43Q6ZNM6 134 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 ERASQ7Z444 233 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 TIMM17AQ99595 171 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 VCX2Q9H322 139 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 PSORS1C2Q9UIG4 136 aa3.11□□□□□ -1.91
USH1C-210ENST00000534556 IGLV5-45A0A087WSX0 123 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 SMIM1B2RUZ4 78 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 J3QL48 77 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 K7EMI3 77 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 NDUFA1O15239 70 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 NPSP0C0P6 89 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 S100PP25815 95 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 LINC00310P59036 64 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 PDZD11Q5EBL8 140 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 SERTAD4-AS1Q5TG53 156 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 CBLN2Q8IUK8 224 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 LINC01561Q8N1V8 128 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 LINC00469Q8N7U9 141 aa3.1□□□□□ -1.91
USH1C-210ENST00000534556 SCGB3A1Q96QR1 104 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms