RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 GAGE6Q13070 117 aa10.26□□□□□ -0.77
CHMP4A-207ENST00000533523 PLA2G2DQ9UNK4 145 aa10.26□□□□□ -0.77
CHMP4A-207ENST00000533523 FABP4P15090 132 aa10.25□□□□□ -0.77
CHMP4A-207ENST00000533523 LINC00173Q6ZV60 143 aa10.25□□□□□ -0.77
CHMP4A-207ENST00000533523 SCGB3A1Q96QR1 104 aa10.25□□□□□ -0.77
CHMP4A-207ENST00000533523 C1orf43Q9BWL3 253 aa10.25□□□□□ -0.77
CHMP4A-207ENST00000533523 LINC01549A6NIU2 74 aa10.24□□□□□ -0.77
CHMP4A-207ENST00000533523 IFITM10A6NMD0 228 aa10.24□□□□□ -0.77
CHMP4A-207ENST00000533523 H7C423 109 aa10.24□□□□□ -0.77
CHMP4A-207ENST00000533523 LEPROTL1O95214 131 aa10.24□□□□□ -0.77
CHMP4A-207ENST00000533523 FGF6P10767 208 aa10.24□□□□□ -0.77
CHMP4A-207ENST00000533523 RBX1P62877 108 aa10.24□□□□□ -0.77
CHMP4A-207ENST00000533523 MIAQ16674 131 aa10.24□□□□□ -0.77
CHMP4A-207ENST00000533523 PACRGQ96M98 296 aaPredicted RBP10.24□□□□□ -0.77
CHMP4A-207ENST00000533523 HIST1H2BLQ99880 126 aa10.24□□□□□ -0.77
CHMP4A-207ENST00000533523 AMMECR1LQ6DCA0 310 aa10.23□□□□□ -0.77
CHMP4A-207ENST00000533523 ERASQ7Z444 233 aa10.23□□□□□ -0.77
CHMP4A-207ENST00000533523 MRPL52Q86TS9 123 aaKnown RBP10.23□□□□□ -0.77
CHMP4A-207ENST00000533523 TIMM21Q9BVV7 248 aa10.23□□□□□ -0.77
CHMP4A-207ENST00000533523 SPANXA1Q9NS26 97 aa10.23□□□□□ -0.77
CHMP4A-207ENST00000533523 HSPB8Q9UJY1 196 aa10.23□□□□□ -0.77
CHMP4A-207ENST00000533523 UBE2D4Q9Y2X8 147 aa10.23□□□□□ -0.77
CHMP4A-207ENST00000533523 IGIPA6NJ69 53 aa10.22□□□□□ -0.77
CHMP4A-207ENST00000533523 ATP5LO75964 103 aa10.22□□□□□ -0.77
CHMP4A-207ENST00000533523 RPL37AP61513 92 aaKnown RBP10.22□□□□□ -0.77
CHMP4A-207ENST00000533523 SMAGPQ0VAQ4 97 aa10.22□□□□□ -0.77
CHMP4A-207ENST00000533523 C14orf177Q52M58 125 aa10.22□□□□□ -0.77
CHMP4A-207ENST00000533523 ENHOQ6UWT2 76 aa10.22□□□□□ -0.77
CHMP4A-207ENST00000533523 TIMM17AQ99595 171 aa10.22□□□□□ -0.77
CHMP4A-207ENST00000533523 PYGO1Q9Y3Y4 419 aa10.22□□□□□ -0.77
CHMP4A-207ENST00000533523 A0A1B0GUV1 79 aa10.21□□□□□ -0.77
CHMP4A-207ENST00000533523 IFI27L1Q96BM0 104 aa10.21□□□□□ -0.77
CHMP4A-207ENST00000533523 TMEM141Q96I45 108 aa10.21□□□□□ -0.77
CHMP4A-207ENST00000533523 PRR34Q9NV39 138 aa10.21□□□□□ -0.77
CHMP4A-207ENST00000533523 IGLV4-3A0A075B6K6 122 aa10.2□□□□□ -0.78
CHMP4A-207ENST00000533523 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.2□□□□□ -0.78
CHMP4A-207ENST00000533523 ZNF25P17030 456 aaPredicted RBP10.2□□□□□ -0.78
CHMP4A-207ENST00000533523 DGAT2L7PQ6IED9 249 aa10.2□□□□□ -0.78
CHMP4A-207ENST00000533523 Q6ZUT4 128 aa10.2□□□□□ -0.78
CHMP4A-207ENST00000533523 OR5A1Q8NGJ0 315 aa10.2□□□□□ -0.78
CHMP4A-207ENST00000533523 TMEM101Q96IK0 257 aa10.2□□□□□ -0.78
CHMP4A-207ENST00000533523 OPRPNQ99935 248 aaPredicted RBP10.2□□□□□ -0.78
CHMP4A-207ENST00000533523 IGLV4-60A0A075B6I1 120 aa10.19□□□□□ -0.78
CHMP4A-207ENST00000533523 MRPS36P82909 103 aaKnown RBP10.19□□□□□ -0.78
CHMP4A-207ENST00000533523 LINC00269Q8N2A0 174 aa10.19□□□□□ -0.78
CHMP4A-207ENST00000533523 FAM104AQ969W3 186 aa10.19□□□□□ -0.78
CHMP4A-207ENST00000533523 CSDC2Q9Y534 153 aaKnown RBP10.19□□□□□ -0.78
CHMP4A-207ENST00000533523 NPSP0C0P6 89 aa10.18□□□□□ -0.78
CHMP4A-207ENST00000533523 REG3AQ06141 175 aa10.18□□□□□ -0.78
CHMP4A-207ENST00000533523 Q6ZN92 141 aa10.18□□□□□ -0.78
CHMP4A-207ENST00000533523 RNASE13Q5GAN3 156 aaKnown RBP10.17□□□□□ -0.78
CHMP4A-207ENST00000533523 ZC2HC1BQ5TFG8 222 aa10.17□□□□□ -0.78
CHMP4A-207ENST00000533523 CLPSL2Q6UWE3 100 aa10.17□□□□□ -0.78
CHMP4A-207ENST00000533523 MAP1LC3CQ9BXW4 147 aa10.17□□□□□ -0.78
CHMP4A-207ENST00000533523 CDC42SE2Q9NRR3 84 aa10.17□□□□□ -0.78
CHMP4A-207ENST00000533523 TRAV8-4A0A0B4J246 113 aa10.16□□□□□ -0.78
CHMP4A-207ENST00000533523 USP17L23D6RBM5 183 aa10.16□□□□□ -0.78
CHMP4A-207ENST00000533523 PRSS1P07477 247 aa10.16□□□□□ -0.78
CHMP4A-207ENST00000533523 C3orf79P0CE67 100 aa10.16□□□□□ -0.78
CHMP4A-207ENST00000533523 HNRNPA3P51991 378 aaKnown RBP10.16□□□□□ -0.78
CHMP4A-207ENST00000533523 KRTDAPP60985 99 aa10.16□□□□□ -0.78
CHMP4A-207ENST00000533523 PAPPA-AS1Q5QFB9 102 aa10.16□□□□□ -0.78
CHMP4A-207ENST00000533523 ZNF664Q8N3J9 261 aa10.16□□□□□ -0.78
CHMP4A-207ENST00000533523 OR10D4PQ8NGN7 298 aa10.16□□□□□ -0.78
CHMP4A-207ENST00000533523 H0Y8G0 127 aa10.15□□□□□ -0.78
CHMP4A-207ENST00000533523 AMELXQ99217 191 aa10.15□□□□□ -0.78
CHMP4A-207ENST00000533523 VCX2Q9H322 139 aa10.15□□□□□ -0.78
CHMP4A-207ENST00000533523 SYS1-DBNDD2H3BUS1 97 aa10.14□□□□□ -0.79
CHMP4A-207ENST00000533523 PMVKQ15126 192 aa10.14□□□□□ -0.79
CHMP4A-207ENST00000533523 TEX43Q6ZNM6 134 aa10.14□□□□□ -0.79
CHMP4A-207ENST00000533523 C2orf88Q9BSF0 95 aa10.13□□□□□ -0.79
CHMP4A-207ENST00000533523 CST9LQ9H4G1 147 aa10.13□□□□□ -0.79
CHMP4A-207ENST00000533523 TRAV12-1A0A0B4J245 112 aa10.12□□□□□ -0.79
CHMP4A-207ENST00000533523 LOC105371267A0A1B0GV96 52 aa10.12□□□□□ -0.79
CHMP4A-207ENST00000533523 PET117Q6UWS5 81 aa10.12□□□□□ -0.79
CHMP4A-207ENST00000533523 IGLV10-54A0A075B6I4 117 aa10.11□□□□□ -0.79
CHMP4A-207ENST00000533523 IGKV3OR2-268A0A0C4DH90 116 aa10.11□□□□□ -0.79
CHMP4A-207ENST00000533523 KRTAP26-1Q6PEX3 210 aa10.11□□□□□ -0.79
CHMP4A-207ENST00000533523 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.11□□□□□ -0.79
CHMP4A-207ENST00000533523 TRAV13-1A0A0B4J241 112 aa10.1□□□□□ -0.79
CHMP4A-207ENST00000533523 MT1HL1P0DM35 61 aa10.1□□□□□ -0.79
CHMP4A-207ENST00000533523 AKR1D1P51857 326 aa10.1□□□□□ -0.79
CHMP4A-207ENST00000533523 ODF1Q14990 250 aa10.1□□□□□ -0.79
CHMP4A-207ENST00000533523 CHTOPQ9Y3Y2 248 aaKnown RBP10.1□□□□□ -0.79
CHMP4A-207ENST00000533523 UBE2D1P51668 147 aa10.09□□□□□ -0.79
CHMP4A-207ENST00000533523 LINC01545Q5VT33 79 aa10.09□□□□□ -0.79
CHMP4A-207ENST00000533523 PMCHL2Q9BQD1 86 aa10.09□□□□□ -0.79
CHMP4A-207ENST00000533523 LINC00959A0A1B0GUT2 108 aa10.08□□□□□ -0.8
CHMP4A-207ENST00000533523 C20orf202A1L168 122 aa10.08□□□□□ -0.8
CHMP4A-207ENST00000533523 PANO1I0J062 215 aa10.08□□□□□ -0.8
CHMP4A-207ENST00000533523 C9orf163Q8N9P6 203 aa10.08□□□□□ -0.8
CHMP4A-207ENST00000533523 MRPL35Q9NZE8 188 aaKnown RBP10.08□□□□□ -0.8
CHMP4A-207ENST00000533523 A0A0J9YXV3 536 aa10.07□□□□□ -0.8
CHMP4A-207ENST00000533523 F8VRH5 84 aa10.07□□□□□ -0.8
CHMP4A-207ENST00000533523 IGLV4-69A0A075B6H9 119 aa10.06□□□□□ -0.8
CHMP4A-207ENST00000533523 SCGB1D1O95968 90 aa10.06□□□□□ -0.8
CHMP4A-207ENST00000533523 IGLC3P0DOY3 106 aa10.06□□□□□ -0.8
CHMP4A-207ENST00000533523 SS18Q15532 418 aa10.06□□□□□ -0.8
CHMP4A-207ENST00000533523 CFAP161Q6P656 301 aa10.06□□□□□ -0.8
CHMP4A-207ENST00000533523 GAGE12HA6NDE8 117 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms