RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 CD164L2Q6UWJ8 174 aa4.74□□□□□ -1.65
CD44-232ENST00000531118 LINC00173Q6ZV60 143 aa4.74□□□□□ -1.65
CD44-232ENST00000531118 C2orf48Q96LS8 159 aa4.74□□□□□ -1.65
CD44-232ENST00000531118 OPRPNQ99935 248 aaPredicted RBP4.74□□□□□ -1.65
CD44-232ENST00000531118 NIT2Q9NQR4 276 aa4.74□□□□□ -1.65
CD44-232ENST00000531118 H7C423 109 aa4.73□□□□□ -1.65
CD44-232ENST00000531118 ZNF861PO60384 105 aa4.73□□□□□ -1.65
CD44-232ENST00000531118 ZNF25P17030 456 aaPredicted RBP4.73□□□□□ -1.65
CD44-232ENST00000531118 NTF3P20783 257 aa4.73□□□□□ -1.65
CD44-232ENST00000531118 CEBPGP53567 150 aa4.73□□□□□ -1.65
CD44-232ENST00000531118 KRTAP7-1Q8IUC3 87 aa4.73□□□□□ -1.65
CD44-232ENST00000531118 LINC00304Q8N9R0 145 aa4.73□□□□□ -1.65
CD44-232ENST00000531118 MPLKIPQ8TAP9 179 aa4.73□□□□□ -1.65
CD44-232ENST00000531118 PPDPFQ9H3Y8 114 aa4.73□□□□□ -1.65
CD44-232ENST00000531118 TRBV20OR9-2A0A075B6H5 130 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 NCR2O95944 276 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 ESDP10768 282 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 PCP4P48539 62 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 MT1HP80294 61 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 SPAG11BQ08648 103 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 SS18Q15532 418 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 SMIM15Q7Z3B0 74 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 OCC1Q8TAD7 63 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 BORCS7Q96B45 105 aa4.72□□□□□ -1.65
CD44-232ENST00000531118 A0A1B0GVG6 124 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 A8MWL6 223 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 COX7A2LO14548 114 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 GATCO43716 136 aaKnown RBP4.71□□□□□ -1.66
CD44-232ENST00000531118 IGLC6P0CF74 106 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 TWIST1Q15672 202 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 KRTAP13-2Q52LG2 175 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 LYZL1Q6UWQ5 148 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 TMEM101Q96IK0 257 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 BTF3L4Q96K17 158 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 FAM210AQ96ND0 272 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 SMIM7Q9BQ49 75 aa4.71□□□□□ -1.66
CD44-232ENST00000531118 RNASE7Q9H1E1 156 aaKnown RBP4.71□□□□□ -1.66
CD44-232ENST00000531118 ZNF727A8MUV8 499 aa4.7□□□□□ -1.66
CD44-232ENST00000531118 KRTAP10-6P60371 365 aaPredicted RBP4.7□□□□□ -1.66
CD44-232ENST00000531118 PEA15Q15121 130 aa4.7□□□□□ -1.66
CD44-232ENST00000531118 KRTAP19-2Q3LHN2 52 aa4.7□□□□□ -1.66
CD44-232ENST00000531118 FAM74A3Q4VXF1 159 aa4.7□□□□□ -1.66
CD44-232ENST00000531118 TEX261Q6UWH6 196 aa4.7□□□□□ -1.66
CD44-232ENST00000531118 FAM231DQ6ZW35 169 aa4.7□□□□□ -1.66
CD44-232ENST00000531118 FLGP20930 4061 aaPredicted RBP4.69□□□□□ -1.66
CD44-232ENST00000531118 K7EN84 100 aa4.69□□□□□ -1.66
CD44-232ENST00000531118 TSHBP01222 138 aa4.69□□□□□ -1.66
CD44-232ENST00000531118 TLX1NBP0CAT3 122 aa4.69□□□□□ -1.66
CD44-232ENST00000531118 CTRLP40313 264 aa4.69□□□□□ -1.66
CD44-232ENST00000531118 CNFNQ9BYD5 112 aa4.69□□□□□ -1.66
CD44-232ENST00000531118 SMDT1Q9H4I9 107 aa4.69□□□□□ -1.66
CD44-232ENST00000531118 MRPL35Q9NZE8 188 aaKnown RBP4.69□□□□□ -1.66
CD44-232ENST00000531118 FCGBPQ9Y6R7 5405 aaPredicted RBP4.69□□□□□ -1.66
CD44-232ENST00000531118 NUPR1O60356 82 aa4.68□□□□□ -1.66
CD44-232ENST00000531118 SEC61BP60468 96 aaKnown RBP4.68□□□□□ -1.66
CD44-232ENST00000531118 TMEM241Q24JQ0 296 aa4.68□□□□□ -1.66
CD44-232ENST00000531118 KRTAP13-3Q3SY46 172 aa4.68□□□□□ -1.66
CD44-232ENST00000531118 GAGE2EQ4V326 116 aa4.68□□□□□ -1.66
CD44-232ENST00000531118 LINC01551Q86U37 167 aa4.68□□□□□ -1.66
CD44-232ENST00000531118 RPL39LQ96EH5 51 aaKnown RBP4.68□□□□□ -1.66
CD44-232ENST00000531118 IMMP2LQ96T52 175 aa4.68□□□□□ -1.66
CD44-232ENST00000531118 CDC42SE2Q9NRR3 84 aa4.68□□□□□ -1.66
CD44-232ENST00000531118 ANAPC11Q9NYG5 84 aa4.68□□□□□ -1.66
CD44-232ENST00000531118 GAGE2DQ9UEU5 116 aa4.68□□□□□ -1.66
CD44-232ENST00000531118 NDUFA1O15239 70 aa4.67□□□□□ -1.66
CD44-232ENST00000531118 SRP19P09132 144 aaKnown RBP4.67□□□□□ -1.66
CD44-232ENST00000531118 FOXA3P55318 350 aaPredicted RBP4.67□□□□□ -1.66
CD44-232ENST00000531118 RAB14P61106 215 aa4.67□□□□□ -1.66
CD44-232ENST00000531118 GATD1Q8NB37 220 aa4.67□□□□□ -1.66
CD44-232ENST00000531118 OR10D4PQ8NGN7 298 aa4.67□□□□□ -1.66
CD44-232ENST00000531118 OSTCQ9NRP0 149 aa4.67□□□□□ -1.66
CD44-232ENST00000531118 C6orf48Q9UBA6 75 aa4.67□□□□□ -1.66
CD44-232ENST00000531118 A0A1B0GUT8 65 aa4.66□□□□□ -1.66
CD44-232ENST00000531118 SDHAF1A6NFY7 115 aa4.66□□□□□ -1.66
CD44-232ENST00000531118 RPL28P46779 137 aaKnown RBP4.66□□□□□ -1.66
CD44-232ENST00000531118 RIGQ13278 110 aa4.66□□□□□ -1.66
CD44-232ENST00000531118 FP248Q71RG6 208 aaPredicted RBP4.66□□□□□ -1.66
CD44-232ENST00000531118 C5orf38Q86SI9 138 aa4.66□□□□□ -1.66
CD44-232ENST00000531118 MRPL52Q86TS9 123 aaKnown RBP4.66□□□□□ -1.66
CD44-232ENST00000531118 LINC00337Q8N6G1 96 aa4.66□□□□□ -1.66
CD44-232ENST00000531118 ORAOV1Q8WV07 137 aa4.66□□□□□ -1.66
CD44-232ENST00000531118 MRAP2Q96G30 205 aa4.66□□□□□ -1.66
CD44-232ENST00000531118 CTDSP1Q9GZU7 261 aa4.66□□□□□ -1.66
CD44-232ENST00000531118 NAT8Q9UHE5 227 aa4.66□□□□□ -1.66
CD44-232ENST00000531118 SYNE2Q8WXH0 6885 aaKnown RBP4.66□□□□□ -1.66
CD44-232ENST00000531118 HIGD1CA8MV81 97 aa4.65□□□□□ -1.67
CD44-232ENST00000531118 C1orf196B1AJZ1 125 aa4.65□□□□□ -1.67
CD44-232ENST00000531118 PPP1R17O96001 155 aa4.65□□□□□ -1.67
CD44-232ENST00000531118 CTAG1AP78358 180 aa4.65□□□□□ -1.67
CD44-232ENST00000531118 ADIRFQ15847 76 aa4.65□□□□□ -1.67
CD44-232ENST00000531118 C9orf129Q5T035 196 aaKnown RBP4.65□□□□□ -1.67
CD44-232ENST00000531118 LINC00242Q5T6M2 205 aa4.65□□□□□ -1.67
CD44-232ENST00000531118 NRACQ8N912 160 aa4.65□□□□□ -1.67
CD44-232ENST00000531118 TMEM242Q9NWH2 141 aa4.65□□□□□ -1.67
CD44-232ENST00000531118 NAT8BQ9UHF3 227 aa4.65□□□□□ -1.67
CD44-232ENST00000531118 F8WDY8 70 aa4.64□□□□□ -1.67
CD44-232ENST00000531118 IGKV2-30P06310 120 aa4.64□□□□□ -1.67
CD44-232ENST00000531118 RPL23P62829 140 aaKnown RBP4.64□□□□□ -1.67
CD44-232ENST00000531118 FAM229BQ4G0N7 80 aa4.64□□□□□ -1.67
CD44-232ENST00000531118 RNASE13Q5GAN3 156 aaKnown RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms