RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ORMDL3Q8N138 153 aa6.56□□□□□ -1.36
CPSF1-203ENST00000527916 FAM104AQ969W3 186 aa6.56□□□□□ -1.36
CPSF1-203ENST00000527916 ANAPC16Q96DE5 110 aa6.56□□□□□ -1.36
CPSF1-203ENST00000527916 LINC00526Q96FQ7 95 aa6.56□□□□□ -1.36
CPSF1-203ENST00000527916 C2orf48Q96LS8 159 aa6.56□□□□□ -1.36
CPSF1-203ENST00000527916 SPANXA1Q9NS26 97 aa6.56□□□□□ -1.36
CPSF1-203ENST00000527916 MUC2Q02817 5179 aa6.55□□□□□ -1.36
CPSF1-203ENST00000527916 KRTAP9-6A0A140TA67 174 aa6.55□□□□□ -1.36
CPSF1-203ENST00000527916 F8WDY8 70 aa6.55□□□□□ -1.36
CPSF1-203ENST00000527916 RAB14P61106 215 aa6.55□□□□□ -1.36
CPSF1-203ENST00000527916 RPL39P62891 51 aaKnown RBP6.55□□□□□ -1.36
CPSF1-203ENST00000527916 RNASE13Q5GAN3 156 aaKnown RBP6.55□□□□□ -1.36
CPSF1-203ENST00000527916 TMEM136Q6ZRR5 245 aa6.55□□□□□ -1.36
CPSF1-203ENST00000527916 LAMTOR2Q9Y2Q5 125 aa6.55□□□□□ -1.36
CPSF1-203ENST00000527916 PYGO1Q9Y3Y4 419 aa6.55□□□□□ -1.36
CPSF1-203ENST00000527916 LOC107984640A0A0U1RRK4 108 aa6.54□□□□□ -1.36
CPSF1-203ENST00000527916 MT-ND4LP03901 98 aa6.54□□□□□ -1.36
CPSF1-203ENST00000527916 RAB5AP20339 215 aa6.54□□□□□ -1.36
CPSF1-203ENST00000527916 PTTG1IPP53801 180 aa6.54□□□□□ -1.36
CPSF1-203ENST00000527916 RNF151Q2KHN1 245 aa6.54□□□□□ -1.36
CPSF1-203ENST00000527916 C5orf38Q86SI9 138 aa6.54□□□□□ -1.36
CPSF1-203ENST00000527916 IGHV3OR16-9A0A0B4J2B5 98 aa6.53□□□□□ -1.36
CPSF1-203ENST00000527916 OR10D4PQ8NGN7 298 aa6.53□□□□□ -1.36
CPSF1-203ENST00000527916 PRELID3AQ96N28 172 aa6.53□□□□□ -1.36
CPSF1-203ENST00000527916 CAMK2N2Q96S95 79 aa6.53□□□□□ -1.36
CPSF1-203ENST00000527916 FAT4Q6V0I7 4981 aa6.52□□□□□ -1.36
CPSF1-203ENST00000527916 K7EMI3 77 aa6.51□□□□□ -1.37
CPSF1-203ENST00000527916 IFI27P40305 119 aaPredicted RBP6.51□□□□□ -1.37
CPSF1-203ENST00000527916 SPAG11BQ08648 103 aa6.51□□□□□ -1.37
CPSF1-203ENST00000527916 OPRPNQ99935 248 aaPredicted RBP6.51□□□□□ -1.37
CPSF1-203ENST00000527916 MRPL35Q9NZE8 188 aaKnown RBP6.51□□□□□ -1.37
CPSF1-203ENST00000527916 IFITM10A6NMD0 228 aa6.5□□□□□ -1.37
CPSF1-203ENST00000527916 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.5□□□□□ -1.37
CPSF1-203ENST00000527916 GAGE2BQ13066 116 aa6.5□□□□□ -1.37
CPSF1-203ENST00000527916 SRSF9Q13242 221 aaKnown RBP eCLIP6.5□□□□□ -1.37
CPSF1-203ENST00000527916 CLLU1Q5K131 121 aa6.5□□□□□ -1.37
CPSF1-203ENST00000527916 Q6ZRP5 223 aa6.5□□□□□ -1.37
CPSF1-203ENST00000527916 IMMP2LQ96T52 175 aa6.5□□□□□ -1.37
CPSF1-203ENST00000527916 MAP1LC3AQ9H492 121 aa6.5□□□□□ -1.37
CPSF1-203ENST00000527916 IGLV4-3A0A075B6K6 122 aa6.49□□□□□ -1.37
CPSF1-203ENST00000527916 A0A087WZ39 114 aa6.49□□□□□ -1.37
CPSF1-203ENST00000527916 A0A1W2PNN7 141 aa6.49□□□□□ -1.37
CPSF1-203ENST00000527916 NPSP0C0P6 89 aa6.49□□□□□ -1.37
CPSF1-203ENST00000527916 TLX1NBP0CAT3 122 aa6.49□□□□□ -1.37
CPSF1-203ENST00000527916 LINC01561Q8N1V8 128 aa6.49□□□□□ -1.37
CPSF1-203ENST00000527916 Q8N8P6 123 aa6.49□□□□□ -1.37
CPSF1-203ENST00000527916 ORAOV1Q8WV07 137 aa6.49□□□□□ -1.37
CPSF1-203ENST00000527916 TMEM141Q96I45 108 aa6.49□□□□□ -1.37
CPSF1-203ENST00000527916 TGIF2-C20orf24A0A0A6YYL0 155 aa6.48□□□□□ -1.37
CPSF1-203ENST00000527916 NDUFA1O15239 70 aa6.48□□□□□ -1.37
CPSF1-203ENST00000527916 ORMDL2Q53FV1 153 aa6.48□□□□□ -1.37
CPSF1-203ENST00000527916 LINC00242Q5T6M2 205 aa6.48□□□□□ -1.37
CPSF1-203ENST00000527916 UQCC3Q6UW78 93 aa6.48□□□□□ -1.37
CPSF1-203ENST00000527916 CYSLTR1Q9Y271 337 aa6.48□□□□□ -1.37
CPSF1-203ENST00000527916 LOC389332A0A1B0GUA5 103 aa6.47□□□□□ -1.37
CPSF1-203ENST00000527916 G0S2P27469 103 aa6.47□□□□□ -1.37
CPSF1-203ENST00000527916 KIAA0087Q14695 138 aa6.47□□□□□ -1.37
CPSF1-203ENST00000527916 C9orf116Q5BN46 136 aaPredicted RBP6.47□□□□□ -1.37
CPSF1-203ENST00000527916 C2orf66Q6UXQ4 117 aa6.47□□□□□ -1.37
CPSF1-203ENST00000527916 TEX43Q6ZNM6 134 aa6.47□□□□□ -1.37
CPSF1-203ENST00000527916 CTDSP1Q9GZU7 261 aa6.47□□□□□ -1.37
CPSF1-203ENST00000527916 NXT2Q9NPJ8 142 aaKnown RBP6.47□□□□□ -1.37
CPSF1-203ENST00000527916 TRAV9-1A0A075B6T8 112 aa6.46□□□□□ -1.38
CPSF1-203ENST00000527916 UBE2D1P51668 147 aa6.46□□□□□ -1.38
CPSF1-203ENST00000527916 RPL18AQ02543 176 aaKnown RBP6.46□□□□□ -1.38
CPSF1-203ENST00000527916 UNQ6190/PRO20217Q6UXQ8 127 aa6.46□□□□□ -1.38
CPSF1-203ENST00000527916 Q6ZN92 141 aa6.46□□□□□ -1.38
CPSF1-203ENST00000527916 FAM19A3Q7Z5A8 133 aa6.46□□□□□ -1.38
CPSF1-203ENST00000527916 AMELXQ99217 191 aa6.46□□□□□ -1.38
CPSF1-203ENST00000527916 C2orf88Q9BSF0 95 aa6.46□□□□□ -1.38
CPSF1-203ENST00000527916 VCX2Q9H322 139 aa6.46□□□□□ -1.38
CPSF1-203ENST00000527916 TMEM218A2RU14 115 aa6.45□□□□□ -1.38
CPSF1-203ENST00000527916 IGIPA6NJ69 53 aa6.45□□□□□ -1.38
CPSF1-203ENST00000527916 C10orf25Q5T742 122 aa6.45□□□□□ -1.38
CPSF1-203ENST00000527916 C6orf48Q9UBA6 75 aa6.45□□□□□ -1.38
CPSF1-203ENST00000527916 PSORS1C2Q9UIG4 136 aa6.45□□□□□ -1.38
CPSF1-203ENST00000527916 TRBV30A0A0K0K1B3 111 aa6.44□□□□□ -1.38
CPSF1-203ENST00000527916 ADCYAP1P18509 176 aa6.44□□□□□ -1.38
CPSF1-203ENST00000527916 PAPPA-AS1Q5QFB9 102 aa6.44□□□□□ -1.38
CPSF1-203ENST00000527916 LINC00173Q6ZV60 143 aa6.44□□□□□ -1.38
CPSF1-203ENST00000527916 SEC11AP67812 179 aa6.43□□□□□ -1.38
CPSF1-203ENST00000527916 IFITM2Q01629 132 aa6.43□□□□□ -1.38
CPSF1-203ENST00000527916 TIMM17AQ99595 171 aa6.43□□□□□ -1.38
CPSF1-203ENST00000527916 SEC11CQ9BY50 192 aa6.43□□□□□ -1.38
CPSF1-203ENST00000527916 LINC01549A6NIU2 74 aa6.42□□□□□ -1.38
CPSF1-203ENST00000527916 MT-ND6P03923 174 aa6.42□□□□□ -1.38
CPSF1-203ENST00000527916 PHF5AQ7RTV0 110 aaKnown RBP6.42□□□□□ -1.38
CPSF1-203ENST00000527916 TOMM6Q96B49 74 aa6.42□□□□□ -1.38
CPSF1-203ENST00000527916 PACRGQ96M98 296 aaPredicted RBP6.42□□□□□ -1.38
CPSF1-203ENST00000527916 GNB1LQ9BYB4 327 aa6.42□□□□□ -1.38
CPSF1-203ENST00000527916 LINC01546A6NGU7 62 aa6.41□□□□□ -1.38
CPSF1-203ENST00000527916 NDUFC2-KCTD14E9PQ53 114 aa6.41□□□□□ -1.38
CPSF1-203ENST00000527916 S100PP25815 95 aa6.41□□□□□ -1.38
CPSF1-203ENST00000527916 HERVK_113P63121 156 aa6.41□□□□□ -1.38
CPSF1-203ENST00000527916 COX19Q49B96 90 aa6.41□□□□□ -1.38
CPSF1-203ENST00000527916 ZC2HC1BQ5TFG8 222 aa6.41□□□□□ -1.38
CPSF1-203ENST00000527916 ERASQ7Z444 233 aa6.41□□□□□ -1.38
CPSF1-203ENST00000527916 PRSS2P07478 247 aa6.4□□□□□ -1.38
CPSF1-203ENST00000527916 PRR4Q16378 134 aa6.4□□□□□ -1.38
CPSF1-203ENST00000527916 KIAA1644Q3SXP7 199 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms