RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 WDR86Q86TI4 376 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 CD177Q8N6Q3 437 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 MAPKAPK5-AS1Q8N8E1 139 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 TM2D3Q9BRN9 247 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 CYSTM1Q9H1C7 97 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 CCL28Q9NRJ3 127 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 RBM12B-AS1Q9P1G2 102 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 FAT4Q6V0I7 4981 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 IGKV1-9A0A0C4DH69 117 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 F8VRH5 84 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 K7EIL1 84 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 IGKV1-39P01597 117 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 TFF1P04155 84 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 IGKV1D-39P04432 117 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 LINC01547P58512 204 aaPredicted RBP3.95□□□□□ -1.78
NUP54-218ENST00000515460 MIC13Q5XKP0 118 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 PVRIGQ6DKI7 326 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 FAM216BQ8N7L0 139 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 PGLYRP4Q96LB8 373 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 C17orf77Q96MU5 243 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 SLC50A1Q9BRV3 221 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 DCTN5Q9BTE1 182 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 MOB4Q9Y3A3 225 aa3.95□□□□□ -1.78
NUP54-218ENST00000515460 TRBV27A0A0K0K1C4 114 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 ZNF815PA8K554 130 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 IBA57-AS1B1ANH7 110 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 SMKR1H3BMG3 65 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 VCYO14598 125 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 CCKP06307 115 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 ZNF137PP52743 207 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 DAD1P61803 113 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 KLKP1Q107X0 134 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 LY6EQ16553 131 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 S100A7L2Q5SY68 101 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 HCP5Q6MZN7 132 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 LINC00596Q86U02 117 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 C11orf45Q8TAV5 145 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 UBALD1Q8TB05 177 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 SPTSSAQ969W0 71 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 EEF1AKMT3Q96AZ1 226 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 SPACA5Q96QH8 159 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 TTTY13Q9BZ97 58 aa3.94□□□□□ -1.78
NUP54-218ENST00000515460 IGLV5-45A0A087WSX0 123 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 IGKV1D-13A0A0B4J2D9 117 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 H3BUX3 64 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 H7BZZ5 65 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 H7C423 109 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 K7EMI3 77 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 LST1O00453 97 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 UBE2L6O14933 153 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 IGHV3-30P01768 117 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 IGHV3-30-5P0DP03 117 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 IGKV1-13P0DP09 117 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 RNASE2P10153 161 aaKnown RBP3.93□□□□□ -1.78
NUP54-218ENST00000515460 CD28P10747 220 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 ZNF22P17026 224 aaPredicted RBP3.93□□□□□ -1.78
NUP54-218ENST00000515460 CKS2P33552 79 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 XCL1P47992 114 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 NSUN5P1Q3KNT7 163 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 TMEM30BQ3MIR4 351 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 C14orf177Q52M58 125 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 FAM222AQ5U5X8 452 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 MKXQ8IYA7 352 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 TMEM75Q8N9X5 138 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 SMCR5Q8TEV8 140 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 TMEM263Q8WUH6 116 aaKnown RBP3.93□□□□□ -1.78
NUP54-218ENST00000515460 GAFA1Q96PS6 74 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 FGF23Q9GZV9 251 aaPredicted RBP3.93□□□□□ -1.78
NUP54-218ENST00000515460 XCL2Q9UBD3 114 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 AGRNO00468 2067 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 TANC2Q9HCD6 1990 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 DNAH11Q96DT5 4516 aa3.93□□□□□ -1.78
NUP54-218ENST00000515460 FLG2Q5D862 2391 aaPredicted RBP3.92□□□□□ -1.78
NUP54-218ENST00000515460 MYCBP2O75592 4640 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 TRAV7A0A075B6U4 112 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 A0A0J9YY99 117 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 D6R8Y8 96 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 M0R1W7 72 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 PRB4P10163 310 aaPredicted RBP3.92□□□□□ -1.78
NUP54-218ENST00000515460 DEFA4P12838 97 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 RBM3P98179 157 aaKnown RBP3.92□□□□□ -1.78
NUP54-218ENST00000515460 PLGLAQ15195 96 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 ECSCRQ19T08 205 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 ZNF876PQ49A33 203 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 MIR17HGQ75NE6 70 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 DYNAPQ8N1N2 210 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 SLC25A29Q8N8R3 303 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 ZNRF1Q8ND25 227 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 WFDC9Q8NEX5 89 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 DCANP1Q8TF63 244 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 ZNF714Q96N38 554 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 TIMM21Q9BVV7 248 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 ZNF702PQ9H963 129 aa3.92□□□□□ -1.78
NUP54-218ENST00000515460 MRPL35Q9NZE8 188 aaKnown RBP3.92□□□□□ -1.78
NUP54-218ENST00000515460 FAT2Q9NYQ8 4349 aa3.91□□□□□ -1.78
NUP54-218ENST00000515460 IGKV1D-17A0A075B6S4 117 aa3.91□□□□□ -1.78
NUP54-218ENST00000515460 TRAV13-2A0A0B4J235 113 aa3.91□□□□□ -1.78
NUP54-218ENST00000515460 TRBV10-3A0A0K0K1G6 114 aa3.91□□□□□ -1.78
NUP54-218ENST00000515460 NXPH4O95158 308 aa3.91□□□□□ -1.78
NUP54-218ENST00000515460 UBE2BP63146 152 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms