RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 SPINK6Q6UWN8 80 aa6.87□□□□□ -1.31
LIMCH1-214ENST00000512228 KRTAP7-1Q8IUC3 87 aa6.87□□□□□ -1.31
LIMCH1-214ENST00000512228 KIR2DL4Q99706 377 aa6.87□□□□□ -1.31
LIMCH1-214ENST00000512228 C20orf78Q9BR46 151 aa6.87□□□□□ -1.31
LIMCH1-214ENST00000512228 TIMM21Q9BVV7 248 aa6.87□□□□□ -1.31
LIMCH1-214ENST00000512228 CTDSP1Q9GZU7 261 aa6.87□□□□□ -1.31
LIMCH1-214ENST00000512228 IGHV3OR16-9A0A0B4J2B5 98 aa6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 LOC107984640A0A0U1RRK4 108 aa6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 FAM168BA1KXE4 195 aa6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 S100A8P05109 93 aa6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 ADCYAP1P18509 176 aa6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 C10orf91Q5T1B1 145 aa6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 PHF5AQ7RTV0 110 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 CAMK2N2Q96S95 79 aa6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 IMMP2LQ96T52 175 aa6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 LINC00474Q9P2X8 69 aa6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 CARHSP1Q9Y2V2 147 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-214ENST00000512228 APOMO95445 188 aa6.85□□□□□ -1.31
LIMCH1-214ENST00000512228 PPP1R17O96001 155 aa6.85□□□□□ -1.31
LIMCH1-214ENST00000512228 RPL32P62910 135 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-214ENST00000512228 Q6ZRP5 223 aa6.85□□□□□ -1.31
LIMCH1-214ENST00000512228 ATP5L2Q7Z4Y8 100 aa6.85□□□□□ -1.31
LIMCH1-214ENST00000512228 SMIM2Q9BVW6 85 aa6.85□□□□□ -1.31
LIMCH1-214ENST00000512228 PSORS1C2Q9UIG4 136 aa6.85□□□□□ -1.31
LIMCH1-214ENST00000512228 RHEBQ15382 184 aa6.84□□□□□ -1.31
LIMCH1-214ENST00000512228 ZC2HC1BQ5TFG8 222 aa6.84□□□□□ -1.31
LIMCH1-214ENST00000512228 UNQ6190/PRO20217Q6UXQ8 127 aa6.84□□□□□ -1.31
LIMCH1-214ENST00000512228 C2orf48Q96LS8 159 aa6.84□□□□□ -1.31
LIMCH1-214ENST00000512228 SNAPINO95295 136 aa6.83□□□□□ -1.32
LIMCH1-214ENST00000512228 SPAG11BQ08648 103 aa6.83□□□□□ -1.32
LIMCH1-214ENST00000512228 KIAA0087Q14695 138 aa6.83□□□□□ -1.32
LIMCH1-214ENST00000512228 SVBPQ8N300 66 aa6.83□□□□□ -1.32
LIMCH1-214ENST00000512228 LRP2P98164 4655 aa6.82□□□□□ -1.32
LIMCH1-214ENST00000512228 TRAV9-1A0A075B6T8 112 aa6.82□□□□□ -1.32
LIMCH1-214ENST00000512228 S100PP25815 95 aa6.82□□□□□ -1.32
LIMCH1-214ENST00000512228 HBBP68871 147 aa6.82□□□□□ -1.32
LIMCH1-214ENST00000512228 MRPS36P82909 103 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-214ENST00000512228 RPL18AQ02543 176 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-214ENST00000512228 ORAOV1Q8WV07 137 aa6.82□□□□□ -1.32
LIMCH1-214ENST00000512228 C6orf48Q9UBA6 75 aa6.82□□□□□ -1.32
LIMCH1-214ENST00000512228 APOC3P02656 99 aa6.81□□□□□ -1.32
LIMCH1-214ENST00000512228 RNF151Q2KHN1 245 aa6.81□□□□□ -1.32
LIMCH1-214ENST00000512228 LINC00242Q5T6M2 205 aa6.81□□□□□ -1.32
LIMCH1-214ENST00000512228 TMEM136Q6ZRR5 245 aa6.81□□□□□ -1.32
LIMCH1-214ENST00000512228 SPANXA1Q9NS26 97 aa6.81□□□□□ -1.32
LIMCH1-214ENST00000512228 IGLV4-3A0A075B6K6 122 aa6.8□□□□□ -1.32
LIMCH1-214ENST00000512228 LOC389332A0A1B0GUA5 103 aa6.8□□□□□ -1.32
LIMCH1-214ENST00000512228 C2orf82Q6UX34 121 aa6.8□□□□□ -1.32
LIMCH1-214ENST00000512228 TMEM18Q96B42 140 aa6.8□□□□□ -1.32
LIMCH1-214ENST00000512228 MRPL35Q9NZE8 188 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-214ENST00000512228 PRSS47A8MTI9 375 aa6.79□□□□□ -1.32
LIMCH1-214ENST00000512228 COX19Q49B96 90 aa6.79□□□□□ -1.32
LIMCH1-214ENST00000512228 GAGE2EQ4V326 116 aa6.79□□□□□ -1.32
LIMCH1-214ENST00000512228 C1orf137Q5JT78 98 aa6.79□□□□□ -1.32
LIMCH1-214ENST00000512228 REG3GQ6UW15 175 aa6.79□□□□□ -1.32
LIMCH1-214ENST00000512228 OR10D4PQ8NGN7 298 aa6.79□□□□□ -1.32
LIMCH1-214ENST00000512228 PRELID3AQ96N28 172 aa6.79□□□□□ -1.32
LIMCH1-214ENST00000512228 RPS10P5Q9NQ39 176 aa6.79□□□□□ -1.32
LIMCH1-214ENST00000512228 GAGE2DQ9UEU5 116 aa6.79□□□□□ -1.32
LIMCH1-214ENST00000512228 A0A087WZ39 114 aa6.78□□□□□ -1.32
LIMCH1-214ENST00000512228 IFITM10A6NMD0 228 aa6.78□□□□□ -1.32
LIMCH1-214ENST00000512228 PPBPP02775 128 aa6.78□□□□□ -1.32
LIMCH1-214ENST00000512228 MT-ND6P03923 174 aa6.78□□□□□ -1.32
LIMCH1-214ENST00000512228 SMAGPQ0VAQ4 97 aa6.78□□□□□ -1.32
LIMCH1-214ENST00000512228 LINC00173Q6ZV60 143 aa6.78□□□□□ -1.32
LIMCH1-214ENST00000512228 ORMDL3Q8N138 153 aa6.78□□□□□ -1.32
LIMCH1-214ENST00000512228 PKIGQ9Y2B9 76 aa6.78□□□□□ -1.32
LIMCH1-214ENST00000512228 PYGO1Q9Y3Y4 419 aa6.78□□□□□ -1.32
LIMCH1-214ENST00000512228 IGLV7-43P04211 117 aa6.77□□□□□ -1.33
LIMCH1-214ENST00000512228 TLX1NBP0CAT3 122 aa6.77□□□□□ -1.33
LIMCH1-214ENST00000512228 C9orf129Q5T035 196 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-214ENST00000512228 PRR26Q8N8Z3 221 aa6.77□□□□□ -1.33
LIMCH1-214ENST00000512228 NDUFA1O15239 70 aa6.76□□□□□ -1.33
LIMCH1-214ENST00000512228 UBE2D1P51668 147 aa6.76□□□□□ -1.33
LIMCH1-214ENST00000512228 FAM19A5Q7Z5A7 132 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-214ENST00000512228 SLC7A5P1Q8MH63 180 aa6.76□□□□□ -1.33
LIMCH1-214ENST00000512228 LPAP08519 4548 aa6.76□□□□□ -1.33
LIMCH1-214ENST00000512228 RNF213Q63HN8 5207 aa6.76□□□□□ -1.33
LIMCH1-214ENST00000512228 IGIPA6NJ69 53 aa6.75□□□□□ -1.33
LIMCH1-214ENST00000512228 RAB5AP20339 215 aa6.75□□□□□ -1.33
LIMCH1-214ENST00000512228 IFI27P40305 119 aaPredicted RBP6.75□□□□□ -1.33
LIMCH1-214ENST00000512228 Q8N8P6 123 aa6.75□□□□□ -1.33
LIMCH1-214ENST00000512228 TMEM141Q96I45 108 aa6.75□□□□□ -1.33
LIMCH1-214ENST00000512228 AMELXQ99217 191 aa6.75□□□□□ -1.33
LIMCH1-214ENST00000512228 LAMTOR2Q9Y2Q5 125 aa6.75□□□□□ -1.33
LIMCH1-214ENST00000512228 F8WDY8 70 aa6.74□□□□□ -1.33
LIMCH1-214ENST00000512228 KRTAP1-4P0C5Y4 121 aa6.74□□□□□ -1.33
LIMCH1-214ENST00000512228 C2orf66Q6UXQ4 117 aa6.74□□□□□ -1.33
LIMCH1-214ENST00000512228 GNB1LQ9BYB4 327 aa6.74□□□□□ -1.33
LIMCH1-214ENST00000512228 TGIF2-C20orf24A0A0A6YYL0 155 aa6.73□□□□□ -1.33
LIMCH1-214ENST00000512228 KIAA1644Q3SXP7 199 aa6.72□□□□□ -1.33
LIMCH1-214ENST00000512228 MAP1LC3AQ9H492 121 aa6.72□□□□□ -1.33
LIMCH1-214ENST00000512228 SMCO4Q9NRQ5 59 aa6.72□□□□□ -1.33
LIMCH1-214ENST00000512228 TEX43Q6ZNM6 134 aa6.71□□□□□ -1.34
LIMCH1-214ENST00000512228 LINC00469Q8N7U9 141 aa6.71□□□□□ -1.34
LIMCH1-214ENST00000512228 VCX2Q9H322 139 aa6.71□□□□□ -1.34
LIMCH1-214ENST00000512228 TRBV30A0A0K0K1B3 111 aa6.7□□□□□ -1.34
LIMCH1-214ENST00000512228 NDUFC2-KCTD14E9PQ53 114 aa6.7□□□□□ -1.34
LIMCH1-214ENST00000512228 H0Y9J4 135 aa6.7□□□□□ -1.34
LIMCH1-214ENST00000512228 M0QXV9 152 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms