RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 TRGC1P0CF51 173 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 NTF3P20783 257 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 CSN1S1P47710 185 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 CKS1BP61024 79 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 PDE6HQ13956 83 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 PMCHL1Q16048 86 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 TAL2Q16559 108 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 MRPL51Q4U2R6 128 aaKnown RBP1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 PDZD11Q5EBL8 140 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 IBA57Q5T440 356 aaKnown RBP1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 TMEM78Q5T7P6 136 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 EBLN2Q6P2I7 272 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 CEMP1Q6PRD7 247 aaPredicted RBP1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 FOXI2Q6ZQN5 318 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 TMEM136Q6ZRR5 245 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 NIT1Q86X76 327 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 PCP2Q8IVA1 136 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 AMN1Q8IY45 258 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 LYPD1Q8N2G4 141 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 PTH2Q96A98 100 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 FMC1Q96HJ9 113 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 LINC01587Q99440 93 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 SLC50A1Q9BRV3 221 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 RPP21Q9H633 154 aaKnown RBP1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 EDA2RQ9HAV5 297 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 NOP10Q9NPE3 64 aaKnown RBP1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 OSTCQ9NRP0 149 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 IL36BQ9NZH7 164 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 DNAH6Q9C0G6 4158 aa1.61□□□□□ -2.15
LIMCH1-212ENST00000511424 KMT2AQ03164 3969 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 IGLV4-69A0A075B6H9 119 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 A0A087WX48 190 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 SMIM26A0A096LP01 95 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 A0A0J9YY99 117 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 RBAKDNA6NC62 111 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 A6NDN8 102 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 FABP5P3A8MUU1 101 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 TAX1BP3O14907 124 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 NPYP01303 97 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 P01737 135 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 CRYGDP07320 174 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 DEFB130BP0DP73 79 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 DEFB130AP0DP74 79 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 ESDP10768 282 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 HTN3P15516 51 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 SNRPD3P62318 126 aaKnown RBP1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 VAMP3Q15836 100 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 C12orf74Q32Q52 190 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 TDRG1Q3Y452 100 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 FAM162BQ5T6X4 162 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 FAM222AQ5U5X8 452 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 Q6AWC8 147 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 FAM231DQ6ZW35 169 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 FAM19A2Q8N3H0 131 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 Q8N976 141 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 FER1L6-AS1Q8NA97 138 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 Q8NAQ8 132 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 GATD1Q8NB37 220 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 TSKUQ8WUA8 353 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 CHAC1Q9BUX1 264 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 SMDT1Q9H4I9 107 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 TMEM242Q9NWH2 141 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 TP73-AS1Q9UF72 201 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 SS18L2Q9UHA2 77 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 ERG28Q9UKR5 140 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 LAMTOR2Q9Y2Q5 125 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 MRPS16Q9Y3D3 137 aaKnown RBP1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 RYR3Q15413 4870 aa1.6□□□□□ -2.15
LIMCH1-212ENST00000511424 PKD1P98161 4303 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 IGKV2D-24A0A075B6R9 120 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 A0A096LNJ9 63 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 LOC102724200A0A096LPH7 203 aaPredicted RBP1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 TRGV1A0A0A0MS02 117 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 TRAV2A0A0B4J234 112 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 TRAV21A0A0B4J279 112 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 MGPP08493 103 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 IGLC3P0DOY3 106 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 SRIP30626 198 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 PFN2P35080 140 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 FUSP35637 526 aaKnown RBP eCLIP1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 TCTAP57738 103 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 DEFB116Q30KQ4 102 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 RNASE13Q5GAN3 156 aaKnown RBP1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 KPRPQ5T749 579 aaPredicted RBP1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 FAM74A4Q5TZK3 123 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 CFAP126Q5VTH2 177 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 ZFAND6Q6FIF0 208 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 ZNF705AQ6ZN79 300 aaPredicted RBP1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 NTM-AS1Q6ZSK4 140 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 FAM19A1Q7Z5A9 133 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 SMIM20Q8N5G0 67 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 SIGMAR1Q99720 223 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 NDFIP1Q9BT67 221 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 UQCR10Q9UDW1 63 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 TRAPPC1Q9Y5R8 145 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 LY96Q9Y6Y9 160 aa1.59□□□□□ -2.15
LIMCH1-212ENST00000511424 RYR2Q92736 4967 aa1.59□□□□□ -2.16
LIMCH1-212ENST00000511424 KMT2CQ8NEZ4 4911 aaKnown RBP1.59□□□□□ -2.16
LIMCH1-212ENST00000511424 FRAS1Q86XX4 4008 aa1.58□□□□□ -2.16
LIMCH1-212ENST00000511424 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms