RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 UBE2D4Q9Y2X8 147 aa5.37□□□□□ -1.55
CCDC171-209ENST00000498725 A0A087X002 238 aa5.36□□□□□ -1.55
CCDC171-209ENST00000498725 K7EN84 100 aa5.36□□□□□ -1.55
CCDC171-209ENST00000498725 POLR2KP53803 58 aaKnown RBP5.36□□□□□ -1.55
CCDC171-209ENST00000498725 SMDT1Q9H4I9 107 aa5.36□□□□□ -1.55
CCDC171-209ENST00000498725 KANTRA0A1W2PQU2 76 aa5.35□□□□□ -1.55
CCDC171-209ENST00000498725 GATCO43716 136 aaKnown RBP5.35□□□□□ -1.55
CCDC171-209ENST00000498725 PDE6DO43924 150 aa5.35□□□□□ -1.55
CCDC171-209ENST00000498725 ZNF861PO60384 105 aa5.35□□□□□ -1.55
CCDC171-209ENST00000498725 KRTAP19-4Q3LI73 84 aa5.35□□□□□ -1.55
CCDC171-209ENST00000498725 OCC1Q8TAD7 63 aa5.35□□□□□ -1.55
CCDC171-209ENST00000498725 ANAPC11Q9NYG5 84 aa5.35□□□□□ -1.55
CCDC171-209ENST00000498725 CRCT1Q9UGL9 99 aa5.35□□□□□ -1.55
CCDC171-209ENST00000498725 TRBV27A0A0K0K1C4 114 aa5.34□□□□□ -1.55
CCDC171-209ENST00000498725 EIF4EBP3O60516 100 aaPredicted RBP5.34□□□□□ -1.55
CCDC171-209ENST00000498725 TLX1NBP0CAT3 122 aa5.34□□□□□ -1.55
CCDC171-209ENST00000498725 SMAGPQ0VAQ4 97 aa5.34□□□□□ -1.55
CCDC171-209ENST00000498725 BORCS7Q96B45 105 aa5.34□□□□□ -1.55
CCDC171-209ENST00000498725 TEX46H3BTG2 121 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 VCYO14598 125 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 CRYGAP11844 174 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 RAB4AP20338 218 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 RPL39P62891 51 aaKnown RBP5.33□□□□□ -1.56
CCDC171-209ENST00000498725 TMEM241Q24JQ0 296 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 C9orf129Q5T035 196 aaKnown RBP5.33□□□□□ -1.56
CCDC171-209ENST00000498725 LCE5AQ5TCM9 118 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 C2orf82Q6UX34 121 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 AMN1Q8IY45 258 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 LINC00469Q8N7U9 141 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 CTDSP1Q9GZU7 261 aa5.33□□□□□ -1.56
CCDC171-209ENST00000498725 A8MWL6 223 aa5.32□□□□□ -1.56
CCDC171-209ENST00000498725 F8WDY8 70 aa5.32□□□□□ -1.56
CCDC171-209ENST00000498725 ZNF345Q14585 488 aa5.32□□□□□ -1.56
CCDC171-209ENST00000498725 KIR2DL4Q99706 377 aa5.32□□□□□ -1.56
CCDC171-209ENST00000498725 CSDC2Q9Y534 153 aaKnown RBP5.32□□□□□ -1.56
CCDC171-209ENST00000498725 IGLV7-46A0A075B6I9 117 aa5.31□□□□□ -1.56
CCDC171-209ENST00000498725 IGHV3OR16-9A0A0B4J2B5 98 aa5.31□□□□□ -1.56
CCDC171-209ENST00000498725 IFITM10A6NMD0 228 aa5.31□□□□□ -1.56
CCDC171-209ENST00000498725 LINC00173Q6ZV60 143 aa5.31□□□□□ -1.56
CCDC171-209ENST00000498725 TMEM18Q96B42 140 aa5.31□□□□□ -1.56
CCDC171-209ENST00000498725 FAM210AQ96ND0 272 aa5.31□□□□□ -1.56
CCDC171-209ENST00000498725 TMEM191AQ9H0A3 160 aa5.31□□□□□ -1.56
CCDC171-209ENST00000498725 TGIF2-C20orf24A0A0A6YYL0 155 aa5.3□□□□□ -1.56
CCDC171-209ENST00000498725 A0A1B0GUT8 65 aa5.3□□□□□ -1.56
CCDC171-209ENST00000498725 NDUFC2-KCTD14E9PQ53 114 aa5.3□□□□□ -1.56
CCDC171-209ENST00000498725 NUPR1O60356 82 aa5.3□□□□□ -1.56
CCDC171-209ENST00000498725 CEBPGP53567 150 aa5.3□□□□□ -1.56
CCDC171-209ENST00000498725 LINC01547P58512 204 aaPredicted RBP5.3□□□□□ -1.56
CCDC171-209ENST00000498725 SUMO2P61956 95 aaKnown RBP5.3□□□□□ -1.56
CCDC171-209ENST00000498725 KRTAP13-2Q52LG2 175 aa5.3□□□□□ -1.56
CCDC171-209ENST00000498725 LINC00242Q5T6M2 205 aa5.3□□□□□ -1.56
CCDC171-209ENST00000498725 PACRGQ96M98 296 aaPredicted RBP5.3□□□□□ -1.56
CCDC171-209ENST00000498725 C22orf24Q9Y442 160 aa5.3□□□□□ -1.56
CCDC171-209ENST00000498725 MUC17Q685J3 4493 aa5.3□□□□□ -1.56
CCDC171-209ENST00000498725 HIGD1CA8MV81 97 aa5.29□□□□□ -1.56
CCDC171-209ENST00000498725 RPL28P46779 137 aaKnown RBP5.29□□□□□ -1.56
CCDC171-209ENST00000498725 KIAA0087Q14695 138 aa5.29□□□□□ -1.56
CCDC171-209ENST00000498725 TPRXLQ17RH7 258 aa5.29□□□□□ -1.56
CCDC171-209ENST00000498725 NRACQ8N912 160 aa5.29□□□□□ -1.56
CCDC171-209ENST00000498725 LINC00304Q8N9R0 145 aa5.29□□□□□ -1.56
CCDC171-209ENST00000498725 FAM104AQ969W3 186 aa5.29□□□□□ -1.56
CCDC171-209ENST00000498725 TIMM21Q9BVV7 248 aa5.29□□□□□ -1.56
CCDC171-209ENST00000498725 XAGE1AQ9HD64 81 aa5.29□□□□□ -1.56
CCDC171-209ENST00000498725 TRBV30A0A0K0K1B3 111 aa5.28□□□□□ -1.56
CCDC171-209ENST00000498725 RPL37AP8A6NKH3 93 aa5.28□□□□□ -1.56
CCDC171-209ENST00000498725 HBBP68871 147 aa5.28□□□□□ -1.56
CCDC171-209ENST00000498725 TOMM7Q9P0U1 55 aa5.28□□□□□ -1.56
CCDC171-209ENST00000498725 HMSDA8MTL9 139 aa5.27□□□□□ -1.57
CCDC171-209ENST00000498725 BCE1O60756 84 aa5.27□□□□□ -1.57
CCDC171-209ENST00000498725 SRSF3P84103 164 aaKnown RBP5.27□□□□□ -1.57
CCDC171-209ENST00000498725 LBHQ53QV2 105 aaPredicted RBP5.27□□□□□ -1.57
CCDC171-209ENST00000498725 FAM231DQ6ZW35 169 aa5.27□□□□□ -1.57
CCDC171-209ENST00000498725 PPDPFQ9H3Y8 114 aa5.27□□□□□ -1.57
CCDC171-209ENST00000498725 GAGE10A6NGK3 116 aa5.26□□□□□ -1.57
CCDC171-209ENST00000498725 ZNF727A8MUV8 499 aa5.26□□□□□ -1.57
CCDC171-209ENST00000498725 PPP1R2P9O14990 202 aa5.26□□□□□ -1.57
CCDC171-209ENST00000498725 TCAPO15273 167 aa5.26□□□□□ -1.57
CCDC171-209ENST00000498725 PPP1R17O96001 155 aa5.26□□□□□ -1.57
CCDC171-209ENST00000498725 MRPL51Q4U2R6 128 aaKnown RBP5.26□□□□□ -1.57
CCDC171-209ENST00000498725 SPANXA1Q9NS26 97 aa5.26□□□□□ -1.57
CCDC171-209ENST00000498725 IGKV2D-26A0A0A0MRZ7 120 aa5.25□□□□□ -1.57
CCDC171-209ENST00000498725 PRSS2P07478 247 aa5.25□□□□□ -1.57
CCDC171-209ENST00000498725 UBE2AP49459 152 aa5.25□□□□□ -1.57
CCDC171-209ENST00000498725 RIGQ13278 110 aa5.25□□□□□ -1.57
CCDC171-209ENST00000498725 CT83Q5H943 113 aa5.25□□□□□ -1.57
CCDC171-209ENST00000498725 MRPL55Q7Z7F7 128 aaKnown RBP5.25□□□□□ -1.57
CCDC171-209ENST00000498725 BATF3Q9NR55 127 aa5.25□□□□□ -1.57
CCDC171-209ENST00000498725 CKS2P33552 79 aa5.24□□□□□ -1.57
CCDC171-209ENST00000498725 CKS1BP61024 79 aa5.24□□□□□ -1.57
CCDC171-209ENST00000498725 MRPS36P82909 103 aaKnown RBP5.24□□□□□ -1.57
CCDC171-209ENST00000498725 ZC2HC1BQ5TFG8 222 aa5.24□□□□□ -1.57
CCDC171-209ENST00000498725 LINC00167Q96N53 147 aa5.24□□□□□ -1.57
CCDC171-209ENST00000498725 KRTAP4-1Q9BYQ7 146 aa5.24□□□□□ -1.57
CCDC171-209ENST00000498725 FSIP2Q5CZC0 6907 aa5.24□□□□□ -1.57
CCDC171-209ENST00000498725 TNFRSF6BO95407 300 aa5.23□□□□□ -1.57
CCDC171-209ENST00000498725 TAGLN2P37802 199 aaKnown RBP5.23□□□□□ -1.57
CCDC171-209ENST00000498725 C6orf226Q5I0X4 101 aa5.23□□□□□ -1.57
CCDC171-209ENST00000498725 FAM104BQ5XKR9 115 aa5.23□□□□□ -1.57
CCDC171-209ENST00000498725 LINC00337Q8N6G1 96 aa5.23□□□□□ -1.57
CCDC171-209ENST00000498725 SMIM2Q9BVW6 85 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms