RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 IMMP2LQ96T52 175 aa7.2□□□□□ -1.26
COL6A3-213ENST00000493475 TIMM21Q9BVV7 248 aa7.2□□□□□ -1.26
COL6A3-213ENST00000493475 SPAG11BQ08648 103 aa7.19□□□□□ -1.26
COL6A3-213ENST00000493475 NUP35Q8NFH5 326 aa7.19□□□□□ -1.26
COL6A3-213ENST00000493475 C20orf78Q9BR46 151 aa7.19□□□□□ -1.26
COL6A3-213ENST00000493475 UBE2D4Q9Y2X8 147 aa7.19□□□□□ -1.26
COL6A3-213ENST00000493475 F8W036 122 aa7.18□□□□□ -1.26
COL6A3-213ENST00000493475 CKS2P33552 79 aa7.18□□□□□ -1.26
COL6A3-213ENST00000493475 TMEM241Q24JQ0 296 aa7.18□□□□□ -1.26
COL6A3-213ENST00000493475 RNF151Q2KHN1 245 aa7.18□□□□□ -1.26
COL6A3-213ENST00000493475 NDUFA1O15239 70 aa7.17□□□□□ -1.26
COL6A3-213ENST00000493475 KRTAP10-8P60410 259 aa7.17□□□□□ -1.26
COL6A3-213ENST00000493475 SRSF9Q13242 221 aaKnown RBP eCLIP7.17□□□□□ -1.26
COL6A3-213ENST00000493475 C9orf116Q5BN46 136 aaPredicted RBP7.17□□□□□ -1.26
COL6A3-213ENST00000493475 C5orf38Q86SI9 138 aa7.17□□□□□ -1.26
COL6A3-213ENST00000493475 DIRC1Q969H9 104 aa7.17□□□□□ -1.26
COL6A3-213ENST00000493475 SPANXA1Q9NS26 97 aa7.17□□□□□ -1.26
COL6A3-213ENST00000493475 SMKR1H3BMG3 65 aa7.16□□□□□ -1.26
COL6A3-213ENST00000493475 GAS8-AS1O95177 125 aa7.16□□□□□ -1.26
COL6A3-213ENST00000493475 HBBP68871 147 aa7.16□□□□□ -1.26
COL6A3-213ENST00000493475 C1orf137Q5JT78 98 aa7.16□□□□□ -1.26
COL6A3-213ENST00000493475 FAM104BQ5XKR9 115 aa7.16□□□□□ -1.26
COL6A3-213ENST00000493475 ORAOV1Q8WV07 137 aa7.16□□□□□ -1.26
COL6A3-213ENST00000493475 MRPL35Q9NZE8 188 aaKnown RBP7.16□□□□□ -1.26
COL6A3-213ENST00000493475 PSORS1C2Q9UIG4 136 aa7.16□□□□□ -1.26
COL6A3-213ENST00000493475 TGIF2-C20orf24A0A0A6YYL0 155 aa7.15□□□□□ -1.26
COL6A3-213ENST00000493475 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.15□□□□□ -1.26
COL6A3-213ENST00000493475 PPBPP02775 128 aa7.15□□□□□ -1.26
COL6A3-213ENST00000493475 RAB5AP20339 215 aa7.15□□□□□ -1.26
COL6A3-213ENST00000493475 RPL32P62910 135 aaKnown RBP7.15□□□□□ -1.26
COL6A3-213ENST00000493475 ADIRFQ15847 76 aa7.15□□□□□ -1.26
COL6A3-213ENST00000493475 RNASE13Q5GAN3 156 aaKnown RBP7.15□□□□□ -1.26
COL6A3-213ENST00000493475 Q6ZUT4 128 aa7.15□□□□□ -1.26
COL6A3-213ENST00000493475 NRACQ8N912 160 aa7.15□□□□□ -1.26
COL6A3-213ENST00000493475 V9GYV3 84 aa7.15□□□□□ -1.26
COL6A3-213ENST00000493475 TRBV24-1A0A075B6N3 115 aa7.14□□□□□ -1.27
COL6A3-213ENST00000493475 IFITM10A6NMD0 228 aa7.14□□□□□ -1.27
COL6A3-213ENST00000493475 SRP19P09132 144 aaKnown RBP7.14□□□□□ -1.27
COL6A3-213ENST00000493475 IFI27P40305 119 aaPredicted RBP7.14□□□□□ -1.27
COL6A3-213ENST00000493475 MRPL51Q4U2R6 128 aaKnown RBP7.14□□□□□ -1.27
COL6A3-213ENST00000493475 NAT8Q9UHE5 227 aa7.14□□□□□ -1.27
COL6A3-213ENST00000493475 A0A087WZ39 114 aa7.13□□□□□ -1.27
COL6A3-213ENST00000493475 A0A1W2PNN7 141 aa7.13□□□□□ -1.27
COL6A3-213ENST00000493475 MRPS36P82909 103 aaKnown RBP7.13□□□□□ -1.27
COL6A3-213ENST00000493475 PEA15Q15121 130 aa7.13□□□□□ -1.27
COL6A3-213ENST00000493475 SMIM2Q9BVW6 85 aa7.13□□□□□ -1.27
COL6A3-213ENST00000493475 LRP2P98164 4655 aa7.13□□□□□ -1.27
COL6A3-213ENST00000493475 SMIM27A0A1W2PRY6 76 aa7.12□□□□□ -1.27
COL6A3-213ENST00000493475 TNFRSF6BO95407 300 aa7.12□□□□□ -1.27
COL6A3-213ENST00000493475 OPRPNQ99935 248 aaPredicted RBP7.12□□□□□ -1.27
COL6A3-213ENST00000493475 SMDT1Q9H4I9 107 aa7.12□□□□□ -1.27
COL6A3-213ENST00000493475 IGLV7-43P04211 117 aa7.11□□□□□ -1.27
COL6A3-213ENST00000493475 TLX1NBP0CAT3 122 aa7.11□□□□□ -1.27
COL6A3-213ENST00000493475 UBE2D1P51668 147 aa7.11□□□□□ -1.27
COL6A3-213ENST00000493475 RPL23P62829 140 aaKnown RBP7.11□□□□□ -1.27
COL6A3-213ENST00000493475 UBE2BP63146 152 aa7.11□□□□□ -1.27
COL6A3-213ENST00000493475 PHF5AQ7RTV0 110 aaKnown RBP7.11□□□□□ -1.27
COL6A3-213ENST00000493475 PACRGQ96M98 296 aaPredicted RBP7.11□□□□□ -1.27
COL6A3-213ENST00000493475 C2orf88Q9BSF0 95 aa7.11□□□□□ -1.27
COL6A3-213ENST00000493475 RNF213Q63HN8 5207 aa7.11□□□□□ -1.27
COL6A3-213ENST00000493475 TNXBP22105 4242 aa7.1□□□□□ -1.27
COL6A3-213ENST00000493475 IGHV3OR16-9A0A0B4J2B5 98 aa7.1□□□□□ -1.27
COL6A3-213ENST00000493475 D6R8Y8 96 aa7.1□□□□□ -1.27
COL6A3-213ENST00000493475 Q6ZN92 141 aa7.1□□□□□ -1.27
COL6A3-213ENST00000493475 ORMDL3Q8N138 153 aa7.1□□□□□ -1.27
COL6A3-213ENST00000493475 IGLV1-50A0A075B6I6 118 aa7.09□□□□□ -1.27
COL6A3-213ENST00000493475 TRBV30A0A0K0K1B3 111 aa7.09□□□□□ -1.27
COL6A3-213ENST00000493475 H0Y9J4 135 aa7.09□□□□□ -1.27
COL6A3-213ENST00000493475 PRSS2P07478 247 aa7.09□□□□□ -1.27
COL6A3-213ENST00000493475 RPL13AP40429 203 aaKnown RBP7.09□□□□□ -1.27
COL6A3-213ENST00000493475 RPL39P62891 51 aaKnown RBP7.09□□□□□ -1.27
COL6A3-213ENST00000493475 GAGE2EQ4V326 116 aa7.09□□□□□ -1.27
COL6A3-213ENST00000493475 FAM19A5Q7Z5A7 132 aaPredicted RBP7.09□□□□□ -1.27
COL6A3-213ENST00000493475 GAGE2DQ9UEU5 116 aa7.09□□□□□ -1.27
COL6A3-213ENST00000493475 MRPL54Q6P161 138 aaKnown RBP7.08□□□□□ -1.28
COL6A3-213ENST00000493475 TEX43Q6ZNM6 134 aa7.08□□□□□ -1.28
COL6A3-213ENST00000493475 ATP5L2Q7Z4Y8 100 aa7.08□□□□□ -1.28
COL6A3-213ENST00000493475 PYGO1Q9Y3Y4 419 aa7.08□□□□□ -1.28
COL6A3-213ENST00000493475 M0QXV9 152 aa7.07□□□□□ -1.28
COL6A3-213ENST00000493475 G0S2P27469 103 aa7.07□□□□□ -1.28
COL6A3-213ENST00000493475 TMEM136Q6ZRR5 245 aa7.07□□□□□ -1.28
COL6A3-213ENST00000493475 TMEM141Q96I45 108 aa7.07□□□□□ -1.28
COL6A3-213ENST00000493475 LAMTOR2Q9Y2Q5 125 aa7.07□□□□□ -1.28
COL6A3-213ENST00000493475 NDUFC2-KCTD14E9PQ53 114 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 NPYP01303 97 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 CKS1BP61024 79 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 PAPPA-AS1Q5QFB9 102 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 UNQ6190/PRO20217Q6UXQ8 127 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 LINC01561Q8N1V8 128 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 PRELID3AQ96N28 172 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 KRTAP9-3Q9BYQ3 159 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 MAP1LC3AQ9H492 121 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 C6orf48Q9UBA6 75 aa7.06□□□□□ -1.28
COL6A3-213ENST00000493475 SEC11AP67812 179 aa7.05□□□□□ -1.28
COL6A3-213ENST00000493475 LBHQ53QV2 105 aaPredicted RBP7.05□□□□□ -1.28
COL6A3-213ENST00000493475 PRR26Q8N8Z3 221 aa7.05□□□□□ -1.28
COL6A3-213ENST00000493475 CYSLTR1Q9Y271 337 aa7.05□□□□□ -1.28
COL6A3-213ENST00000493475 K7EMI3 77 aa7.04□□□□□ -1.28
COL6A3-213ENST00000493475 NPSP0C0P6 89 aa7.04□□□□□ -1.28
COL6A3-213ENST00000493475 KRTAP19-4Q3LI73 84 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms