RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	ADIRF	Q15847	76 aa		11.25	□□□□□ -0.61
HDAC6-231	ENST00000488905	TMEM241	Q24JQ0	296 aa		11.25	□□□□□ -0.61
HDAC6-231	ENST00000488905	SMIM2	Q9BVW6	85 aa		11.25	□□□□□ -0.61
HDAC6-231	ENST00000488905	SPANXA1	Q9NS26	97 aa		11.25	□□□□□ -0.61
HDAC6-231	ENST00000488905	SMIM27	A0A1W2PRY6	76 aa		11.24	□□□□□ -0.61
HDAC6-231	ENST00000488905	FAM104A	Q969W3	186 aa		11.24	□□□□□ -0.61
HDAC6-231	ENST00000488905	IGHV3OR16-9	A0A0B4J2B5	98 aa		11.23	□□□□□ -0.61
HDAC6-231	ENST00000488905		A0A1B0GW15	77 aa		11.23	□□□□□ -0.61
HDAC6-231	ENST00000488905		F8WDY8	70 aa		11.23	□□□□□ -0.61
HDAC6-231	ENST00000488905	NDUFA1	O15239	70 aa		11.23	□□□□□ -0.61
HDAC6-231	ENST00000488905	TNFRSF6B	O95407	300 aa		11.23	□□□□□ -0.61
HDAC6-231	ENST00000488905	IMMP2L	Q96T52	175 aa		11.23	□□□□□ -0.61
HDAC6-231	ENST00000488905	IFITM10	A6NMD0	228 aa		11.22	□□□□□ -0.61
HDAC6-231	ENST00000488905	MRPS36	P82909	103 aa	Known RBP	11.22	□□□□□ -0.61
HDAC6-231	ENST00000488905	NAT8	Q9UHE5	227 aa		11.22	□□□□□ -0.61
HDAC6-231	ENST00000488905	FAM168B	A1KXE4	195 aa		11.21	□□□□□ -0.61
HDAC6-231	ENST00000488905		D6R8Y8	96 aa		11.21	□□□□□ -0.61
HDAC6-231	ENST00000488905	IGLV7-43	P04211	117 aa		11.21	□□□□□ -0.61
HDAC6-231	ENST00000488905	HBB	P68871	147 aa		11.21	□□□□□ -0.61
HDAC6-231	ENST00000488905	TLX1NB	P0CAT3	122 aa		11.2	□□□□□ -0.62
HDAC6-231	ENST00000488905	C10orf25	Q5T742	122 aa		11.2	□□□□□ -0.62
HDAC6-231	ENST00000488905	DIRC1	Q969H9	104 aa		11.2	□□□□□ -0.62
HDAC6-231	ENST00000488905	NPY	P01303	97 aa		11.19	□□□□□ -0.62
HDAC6-231	ENST00000488905	MRPL54	Q6P161	138 aa	Known RBP	11.19	□□□□□ -0.62
HDAC6-231	ENST00000488905	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	11.19	□□□□□ -0.62
HDAC6-231	ENST00000488905	C6orf48	Q9UBA6	75 aa		11.19	□□□□□ -0.62
HDAC6-231	ENST00000488905		A0A087WZ39	114 aa		11.18	□□□□□ -0.62
HDAC6-231	ENST00000488905		C9JQL5	133 aa		11.18	□□□□□ -0.62
HDAC6-231	ENST00000488905		F8W036	122 aa		11.18	□□□□□ -0.62
HDAC6-231	ENST00000488905	S100A8	P05109	93 aa		11.18	□□□□□ -0.62
HDAC6-231	ENST00000488905	UNQ6190/PRO20217	Q6UXQ8	127 aa		11.18	□□□□□ -0.62
HDAC6-231	ENST00000488905	KRTAP11-1	Q8IUC1	163 aa		11.18	□□□□□ -0.62
HDAC6-231	ENST00000488905	PRR26	Q8N8Z3	221 aa		11.18	□□□□□ -0.62
HDAC6-231	ENST00000488905	TGIF2-C20orf24	A0A0A6YYL0	155 aa		11.17	□□□□□ -0.62
HDAC6-231	ENST00000488905		A0A1B0GXF2	115 aa		11.17	□□□□□ -0.62
HDAC6-231	ENST00000488905		H0Y9J4	135 aa		11.17	□□□□□ -0.62
HDAC6-231	ENST00000488905	SMDT1	Q9H4I9	107 aa		11.17	□□□□□ -0.62
HDAC6-231	ENST00000488905	GAGE2E	Q4V326	116 aa		11.16	□□□□□ -0.62
HDAC6-231	ENST00000488905	GAGE2D	Q9UEU5	116 aa		11.16	□□□□□ -0.62
HDAC6-231	ENST00000488905	PPBP	P02775	128 aa		11.15	□□□□□ -0.62
HDAC6-231	ENST00000488905	IFI27	P40305	119 aa	Predicted RBP	11.15	□□□□□ -0.62
HDAC6-231	ENST00000488905		M0QXV9	152 aa		11.14	□□□□□ -0.63
HDAC6-231	ENST00000488905	SRSF3	P84103	164 aa	Known RBP	11.14	□□□□□ -0.63
HDAC6-231	ENST00000488905	KIAA0087	Q14695	138 aa		11.14	□□□□□ -0.63
HDAC6-231	ENST00000488905	KRTAP7-1	Q8IUC3	87 aa		11.14	□□□□□ -0.63
HDAC6-231	ENST00000488905	ORMDL3	Q8N138	153 aa		11.13	□□□□□ -0.63
HDAC6-231	ENST00000488905	IGLV4-3	A0A075B6K6	122 aa		11.12	□□□□□ -0.63
HDAC6-231	ENST00000488905	TRBV30	A0A0K0K1B3	111 aa		11.12	□□□□□ -0.63
HDAC6-231	ENST00000488905	RAB5A	P20339	215 aa		11.12	□□□□□ -0.63
HDAC6-231	ENST00000488905	PEA15	Q15121	130 aa		11.12	□□□□□ -0.63
HDAC6-231	ENST00000488905	LINC00242	Q5T6M2	205 aa		11.12	□□□□□ -0.63
HDAC6-231	ENST00000488905	PYGO1	Q9Y3Y4	419 aa		11.12	□□□□□ -0.63
HDAC6-231	ENST00000488905	IGLV1-50	A0A075B6I6	118 aa		11.11	□□□□□ -0.63
HDAC6-231	ENST00000488905	KRTAP1-4	P0C5Y4	121 aa		11.11	□□□□□ -0.63
HDAC6-231	ENST00000488905	UBE2B	P63146	152 aa		11.11	□□□□□ -0.63
HDAC6-231	ENST00000488905	TMEM141	Q96I45	108 aa		11.11	□□□□□ -0.63
HDAC6-231	ENST00000488905	NDUFC2-KCTD14	E9PQ53	114 aa		11.1	□□□□□ -0.63
HDAC6-231	ENST00000488905	C2orf82	Q6UX34	121 aa		11.1	□□□□□ -0.63
HDAC6-231	ENST00000488905	TMEM136	Q6ZRR5	245 aa		11.1	□□□□□ -0.63
HDAC6-231	ENST00000488905	ATP5L2	Q7Z4Y8	100 aa		11.1	□□□□□ -0.63
HDAC6-231	ENST00000488905	PRELID3A	Q96N28	172 aa		11.1	□□□□□ -0.63
HDAC6-231	ENST00000488905	TEX43	Q6ZNM6	134 aa		11.09	□□□□□ -0.63
HDAC6-231	ENST00000488905	C9orf129	Q5T035	196 aa	Known RBP	11.08	□□□□□ -0.64
HDAC6-231	ENST00000488905	PACRG	Q96M98	296 aa	Predicted RBP	11.08	□□□□□ -0.64
HDAC6-231	ENST00000488905	UBE2D1	P51668	147 aa		11.07	□□□□□ -0.64
HDAC6-231	ENST00000488905	LINC01561	Q8N1V8	128 aa		11.07	□□□□□ -0.64
HDAC6-231	ENST00000488905	C2orf88	Q9BSF0	95 aa		11.07	□□□□□ -0.64
HDAC6-231	ENST00000488905	MUC2	Q02817	5179 aa		11.07	□□□□□ -0.64
HDAC6-231	ENST00000488905	PRSS47	A8MTI9	375 aa		11.05	□□□□□ -0.64
HDAC6-231	ENST00000488905	MAP1LC3A	Q9H492	121 aa		11.05	□□□□□ -0.64
HDAC6-231	ENST00000488905	LAMTOR2	Q9Y2Q5	125 aa		11.05	□□□□□ -0.64
HDAC6-231	ENST00000488905	LOC389332	A0A1B0GUA5	103 aa		11.04	□□□□□ -0.64
HDAC6-231	ENST00000488905	RPL13A	P40429	203 aa	Known RBP	11.04	□□□□□ -0.64
HDAC6-231	ENST00000488905		Q6ZN92	141 aa		11.04	□□□□□ -0.64
HDAC6-231	ENST00000488905	LINC00173	Q6ZV60	143 aa		11.04	□□□□□ -0.64
HDAC6-231	ENST00000488905	CYSLTR1	Q9Y271	337 aa		11.04	□□□□□ -0.64
HDAC6-231	ENST00000488905	ZC2HC1B	Q5TFG8	222 aa		11.03	□□□□□ -0.64
HDAC6-231	ENST00000488905	C2orf66	Q6UXQ4	117 aa		11.03	□□□□□ -0.64
HDAC6-231	ENST00000488905	PRSS2	P07478	247 aa		11.02	□□□□□ -0.65
HDAC6-231	ENST00000488905	AMELX	Q99217	191 aa		11.02	□□□□□ -0.65
HDAC6-231	ENST00000488905	CKS1B	P61024	79 aa		11.01	□□□□□ -0.65
HDAC6-231	ENST00000488905		Q8IZM0	81 aa		11.01	□□□□□ -0.65
HDAC6-231	ENST00000488905		Q8N8P6	123 aa		11.01	□□□□□ -0.65
HDAC6-231	ENST00000488905	TOMM7	Q9P0U1	55 aa		11.01	□□□□□ -0.65
HDAC6-231	ENST00000488905		A0A1B0GVG6	124 aa		11	□□□□□ -0.65
HDAC6-231	ENST00000488905	VCX2	Q9H322	139 aa		11	□□□□□ -0.65
HDAC6-231	ENST00000488905	NUPR1	O60356	82 aa		10.99	□□□□□ -0.65
HDAC6-231	ENST00000488905	ZNF861P	O60384	105 aa		10.99	□□□□□ -0.65
HDAC6-231	ENST00000488905	NPS	P0C0P6	89 aa		10.99	□□□□□ -0.65
HDAC6-231	ENST00000488905	ORMDL2	Q53FV1	153 aa		10.99	□□□□□ -0.65
HDAC6-231	ENST00000488905	FAM19A3	Q7Z5A8	133 aa		10.99	□□□□□ -0.65
HDAC6-231	ENST00000488905	LINC00469	Q8N7U9	141 aa		10.99	□□□□□ -0.65
HDAC6-231	ENST00000488905	CARHSP1	Q9Y2V2	147 aa	Known RBP	10.99	□□□□□ -0.65
HDAC6-231	ENST00000488905	PRR4	Q16378	134 aa		10.98	□□□□□ -0.65
HDAC6-231	ENST00000488905	C22orf24	Q9Y442	160 aa		10.98	□□□□□ -0.65
HDAC6-231	ENST00000488905	IGIP	A6NJ69	53 aa		10.97	□□□□□ -0.65
HDAC6-231	ENST00000488905	C6orf226	Q5I0X4	101 aa		10.97	□□□□□ -0.65
HDAC6-231	ENST00000488905	ALKBH7	Q9BT30	221 aa	Predicted RBP	10.97	□□□□□ -0.65
HDAC6-231	ENST00000488905	XAGE1A	Q9HD64	81 aa		10.97	□□□□□ -0.65
HDAC6-231	ENST00000488905		K7EMI3	77 aa		10.96	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms