RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 IGHV3OR16-9A0A0B4J2B5 98 aa8.8□□□□□ -1
SYNE1-226ENST00000488376 ZNF561-AS1K7EIQ3 104 aa8.8□□□□□ -1
SYNE1-226ENST00000488376 SYCNQ0VAF6 134 aa8.8□□□□□ -1
SYNE1-226ENST00000488376 LINC00173Q6ZV60 143 aa8.8□□□□□ -1
SYNE1-226ENST00000488376 DPH3Q96FX2 82 aa8.8□□□□□ -1
SYNE1-226ENST00000488376 PYGO1Q9Y3Y4 419 aa8.8□□□□□ -1
SYNE1-226ENST00000488376 S100PP25815 95 aa8.79□□□□□ -1
SYNE1-226ENST00000488376 RPL37AP61513 92 aaKnown RBP8.79□□□□□ -1
SYNE1-226ENST00000488376 RHEBQ15382 184 aa8.79□□□□□ -1
SYNE1-226ENST00000488376 MAJINQ3KP22 176 aa8.79□□□□□ -1
SYNE1-226ENST00000488376 GNB1LQ9BYB4 327 aa8.79□□□□□ -1
SYNE1-226ENST00000488376 LINC00242Q5T6M2 205 aa8.78□□□□□ -1
SYNE1-226ENST00000488376 TMEM141Q96I45 108 aa8.78□□□□□ -1
SYNE1-226ENST00000488376 ALKBH7Q9BT30 221 aaPredicted RBP8.78□□□□□ -1
SYNE1-226ENST00000488376 NXT2Q9NPJ8 142 aaKnown RBP8.78□□□□□ -1
SYNE1-226ENST00000488376 PLAC8Q9NZF1 115 aa8.78□□□□□ -1
SYNE1-226ENST00000488376 CYSLTR1Q9Y271 337 aa8.78□□□□□ -1
SYNE1-226ENST00000488376 TGIF2-C20orf24A0A0A6YYL0 155 aa8.77□□□□□ -1.01
SYNE1-226ENST00000488376 A0A0J9YXV3 536 aa8.77□□□□□ -1.01
SYNE1-226ENST00000488376 IGIPA6NJ69 53 aa8.77□□□□□ -1.01
SYNE1-226ENST00000488376 SPAG11BQ08648 103 aa8.77□□□□□ -1.01
SYNE1-226ENST00000488376 ORMDL2Q53FV1 153 aa8.77□□□□□ -1.01
SYNE1-226ENST00000488376 APOC3P02656 99 aa8.76□□□□□ -1.01
SYNE1-226ENST00000488376 UBE2D1P51668 147 aa8.76□□□□□ -1.01
SYNE1-226ENST00000488376 STPG4Q8N801 248 aa8.76□□□□□ -1.01
SYNE1-226ENST00000488376 ORAOV1Q8WV07 137 aa8.76□□□□□ -1.01
SYNE1-226ENST00000488376 CAMK2N2Q96S95 79 aa8.76□□□□□ -1.01
SYNE1-226ENST00000488376 AMELXQ99217 191 aa8.76□□□□□ -1.01
SYNE1-226ENST00000488376 MRPL18Q9H0U6 180 aaKnown RBP8.76□□□□□ -1.01
SYNE1-226ENST00000488376 C10orf25Q5T742 122 aa8.75□□□□□ -1.01
SYNE1-226ENST00000488376 TEX43Q6ZNM6 134 aa8.75□□□□□ -1.01
SYNE1-226ENST00000488376 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-226ENST00000488376 K7EMI3 77 aa8.74□□□□□ -1.01
SYNE1-226ENST00000488376 APOMO95445 188 aa8.74□□□□□ -1.01
SYNE1-226ENST00000488376 FABP9Q0Z7S8 132 aa8.74□□□□□ -1.01
SYNE1-226ENST00000488376 OR10D4PQ8NGN7 298 aa8.74□□□□□ -1.01
SYNE1-226ENST00000488376 TOMM6Q96B49 74 aa8.74□□□□□ -1.01
SYNE1-226ENST00000488376 C2orf48Q96LS8 159 aa8.74□□□□□ -1.01
SYNE1-226ENST00000488376 A0A087WZ39 114 aa8.73□□□□□ -1.01
SYNE1-226ENST00000488376 PTTG1IPP53801 180 aa8.73□□□□□ -1.01
SYNE1-226ENST00000488376 GAGE2BQ13066 116 aa8.73□□□□□ -1.01
SYNE1-226ENST00000488376 KIAA0087Q14695 138 aa8.73□□□□□ -1.01
SYNE1-226ENST00000488376 LINC01546A6NGU7 62 aa8.72□□□□□ -1.01
SYNE1-226ENST00000488376 UNQ6190/PRO20217Q6UXQ8 127 aa8.72□□□□□ -1.01
SYNE1-226ENST00000488376 Q6ZN92 141 aa8.72□□□□□ -1.01
SYNE1-226ENST00000488376 VCX2Q9H322 139 aa8.72□□□□□ -1.01
SYNE1-226ENST00000488376 LOC107984640A0A0U1RRK4 108 aa8.71□□□□□ -1.02
SYNE1-226ENST00000488376 MT-ND6P03923 174 aa8.71□□□□□ -1.02
SYNE1-226ENST00000488376 URB1-AS1Q96HZ7 61 aa8.71□□□□□ -1.02
SYNE1-226ENST00000488376 C2orf88Q9BSF0 95 aa8.71□□□□□ -1.02
SYNE1-226ENST00000488376 DMBT1Q9UGM3 2413 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-226ENST00000488376 A0A1W2PNN7 141 aa8.7□□□□□ -1.02
SYNE1-226ENST00000488376 SNAPINO95295 136 aa8.7□□□□□ -1.02
SYNE1-226ENST00000488376 RPL18AQ02543 176 aaKnown RBP8.7□□□□□ -1.02
SYNE1-226ENST00000488376 COX19Q49B96 90 aa8.7□□□□□ -1.02
SYNE1-226ENST00000488376 C2orf82Q6UX34 121 aa8.7□□□□□ -1.02
SYNE1-226ENST00000488376 SVBPQ8N300 66 aa8.7□□□□□ -1.02
SYNE1-226ENST00000488376 YPEL4Q96NS1 127 aa8.7□□□□□ -1.02
SYNE1-226ENST00000488376 SCGB3A1Q96QR1 104 aa8.7□□□□□ -1.02
SYNE1-226ENST00000488376 TIMM17AQ99595 171 aa8.7□□□□□ -1.02
SYNE1-226ENST00000488376 C6orf48Q9UBA6 75 aa8.7□□□□□ -1.02
SYNE1-226ENST00000488376 HERC1Q15751 4861 aa8.69□□□□□ -1.02
SYNE1-226ENST00000488376 KRTAP29-1A8MX34 341 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-226ENST00000488376 NPSP0C0P6 89 aa8.69□□□□□ -1.02
SYNE1-226ENST00000488376 ERASQ7Z444 233 aa8.69□□□□□ -1.02
SYNE1-226ENST00000488376 FAM19A3Q7Z5A8 133 aa8.69□□□□□ -1.02
SYNE1-226ENST00000488376 LINC00474Q9P2X8 69 aa8.69□□□□□ -1.02
SYNE1-226ENST00000488376 TRAPPC1Q9Y5R8 145 aa8.69□□□□□ -1.02
SYNE1-226ENST00000488376 A0A096LNJ9 63 aa8.68□□□□□ -1.02
SYNE1-226ENST00000488376 J3QL48 77 aa8.68□□□□□ -1.02
SYNE1-226ENST00000488376 NDUFA1O15239 70 aa8.68□□□□□ -1.02
SYNE1-226ENST00000488376 FA2HQ7L5A8 372 aa8.68□□□□□ -1.02
SYNE1-226ENST00000488376 C18orf32Q8TCD1 76 aa8.68□□□□□ -1.02
SYNE1-226ENST00000488376 MRPL35Q9NZE8 188 aaKnown RBP8.68□□□□□ -1.02
SYNE1-226ENST00000488376 CDKN2A-AS1Q9UH64 79 aa8.68□□□□□ -1.02
SYNE1-226ENST00000488376 PRR3P79522 188 aaKnown RBP8.67□□□□□ -1.02
SYNE1-226ENST00000488376 NDUFA5Q16718 116 aa8.67□□□□□ -1.02
SYNE1-226ENST00000488376 RNF151Q2KHN1 245 aa8.67□□□□□ -1.02
SYNE1-226ENST00000488376 Q6ZRP5 223 aa8.67□□□□□ -1.02
SYNE1-226ENST00000488376 C7orf33Q8WU49 177 aa8.67□□□□□ -1.02
SYNE1-226ENST00000488376 LRP1Q07954 4544 aaKnown RBP8.66□□□□□ -1.02
SYNE1-226ENST00000488376 FAM168BA1KXE4 195 aa8.66□□□□□ -1.02
SYNE1-226ENST00000488376 PMCHL1Q16048 86 aa8.66□□□□□ -1.02
SYNE1-226ENST00000488376 C9orf116Q5BN46 136 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-226ENST00000488376 CBLN2Q8IUK8 224 aa8.66□□□□□ -1.02
SYNE1-226ENST00000488376 SLC7A5P1Q8MH63 180 aa8.66□□□□□ -1.02
SYNE1-226ENST00000488376 PKIGQ9Y2B9 76 aa8.66□□□□□ -1.02
SYNE1-226ENST00000488376 PKHD1L1Q86WI1 4243 aa8.66□□□□□ -1.02
SYNE1-226ENST00000488376 F8WDY8 70 aa8.65□□□□□ -1.02
SYNE1-226ENST00000488376 G0S2P27469 103 aa8.65□□□□□ -1.02
SYNE1-226ENST00000488376 CST9LQ9H4G1 147 aa8.65□□□□□ -1.02
SYNE1-226ENST00000488376 SMCO4Q9NRQ5 59 aa8.65□□□□□ -1.02
SYNE1-226ENST00000488376 TOMM7Q9P0U1 55 aa8.65□□□□□ -1.02
SYNE1-226ENST00000488376 PAPPA-AS1Q5QFB9 102 aa8.64□□□□□ -1.03
SYNE1-226ENST00000488376 KRTAP7-1Q8IUC3 87 aa8.64□□□□□ -1.03
SYNE1-226ENST00000488376 LINC01561Q8N1V8 128 aa8.64□□□□□ -1.03
SYNE1-226ENST00000488376 GEMIN7Q9H840 131 aaKnown RBP8.64□□□□□ -1.03
SYNE1-226ENST00000488376 HERVK_113P63121 156 aa8.63□□□□□ -1.03
SYNE1-226ENST00000488376 GAGE2EQ4V326 116 aa8.63□□□□□ -1.03
SYNE1-226ENST00000488376 PHF5AQ7RTV0 110 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms