RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 C9orf129Q5T035 196 aaKnown RBP5.33□□□□□ -1.56
COL17A1-207ENST00000488320 CNFNQ9BYD5 112 aa5.33□□□□□ -1.56
COL17A1-207ENST00000488320 KRTAP9-9Q9BYP9 154 aa5.33□□□□□ -1.56
COL17A1-207ENST00000488320 KRTAP9-4Q9BYQ2 154 aa5.33□□□□□ -1.56
COL17A1-207ENST00000488320 UBE2D4Q9Y2X8 147 aa5.33□□□□□ -1.56
COL17A1-207ENST00000488320 C22orf24Q9Y442 160 aa5.33□□□□□ -1.56
COL17A1-207ENST00000488320 CSDC2Q9Y534 153 aaKnown RBP5.33□□□□□ -1.56
COL17A1-207ENST00000488320 KRTAP9-7A8MTY7 169 aa5.32□□□□□ -1.56
COL17A1-207ENST00000488320 BCE1O60756 84 aa5.32□□□□□ -1.56
COL17A1-207ENST00000488320 POLR2KP53803 58 aaKnown RBP5.32□□□□□ -1.56
COL17A1-207ENST00000488320 SEC61BP60468 96 aaKnown RBP5.32□□□□□ -1.56
COL17A1-207ENST00000488320 CCL20P78556 96 aa5.32□□□□□ -1.56
COL17A1-207ENST00000488320 LINC00242Q5T6M2 205 aa5.32□□□□□ -1.56
COL17A1-207ENST00000488320 Q6ZUT4 128 aa5.32□□□□□ -1.56
COL17A1-207ENST00000488320 SMIM12Q96EX1 92 aa5.32□□□□□ -1.56
COL17A1-207ENST00000488320 PACRGQ96M98 296 aaPredicted RBP5.32□□□□□ -1.56
COL17A1-207ENST00000488320 KRTAP4-1Q9BYQ7 146 aa5.32□□□□□ -1.56
COL17A1-207ENST00000488320 TRBV30A0A0K0K1B3 111 aa5.31□□□□□ -1.56
COL17A1-207ENST00000488320 VCYO14598 125 aa5.31□□□□□ -1.56
COL17A1-207ENST00000488320 LINC00299Q6ZSB3 139 aa5.31□□□□□ -1.56
COL17A1-207ENST00000488320 KRTAP19-1Q8IUB9 90 aa5.31□□□□□ -1.56
COL17A1-207ENST00000488320 C11orf52Q96A22 123 aa5.31□□□□□ -1.56
COL17A1-207ENST00000488320 TMEM18Q96B42 140 aa5.31□□□□□ -1.56
COL17A1-207ENST00000488320 GNG13Q9P2W3 67 aa5.31□□□□□ -1.56
COL17A1-207ENST00000488320 KRTAP4-8A0A0G2JLE6 195 aa5.3□□□□□ -1.56
COL17A1-207ENST00000488320 TRBV27A0A0K0K1C4 114 aa5.3□□□□□ -1.56
COL17A1-207ENST00000488320 CTAG1AP78358 180 aa5.3□□□□□ -1.56
COL17A1-207ENST00000488320 FAM229BQ4G0N7 80 aa5.3□□□□□ -1.56
COL17A1-207ENST00000488320 LINC00469Q8N7U9 141 aa5.3□□□□□ -1.56
COL17A1-207ENST00000488320 MANBALQ9NQG1 85 aa5.3□□□□□ -1.56
COL17A1-207ENST00000488320 NDUFA13Q9P0J0 144 aa5.3□□□□□ -1.56
COL17A1-207ENST00000488320 IGHV3OR16-9A0A0B4J2B5 98 aa5.29□□□□□ -1.56
COL17A1-207ENST00000488320 UMAD1C9J7I0 102 aa5.29□□□□□ -1.56
COL17A1-207ENST00000488320 GIPP09681 153 aaPredicted RBP5.29□□□□□ -1.56
COL17A1-207ENST00000488320 CFC1BP0CG36 223 aa5.29□□□□□ -1.56
COL17A1-207ENST00000488320 KIR2DL4Q99706 377 aa5.29□□□□□ -1.56
COL17A1-207ENST00000488320 MED9Q9NWA0 146 aa5.29□□□□□ -1.56
COL17A1-207ENST00000488320 ZNF727A8MUV8 499 aa5.28□□□□□ -1.56
COL17A1-207ENST00000488320 ARPC5O15511 151 aa5.28□□□□□ -1.56
COL17A1-207ENST00000488320 UBE2AP49459 152 aa5.28□□□□□ -1.56
COL17A1-207ENST00000488320 C2orf82Q6UX34 121 aa5.28□□□□□ -1.56
COL17A1-207ENST00000488320 BORCS7Q96B45 105 aa5.28□□□□□ -1.56
COL17A1-207ENST00000488320 TRBV20OR9-2A0A075B6H5 130 aa5.27□□□□□ -1.57
COL17A1-207ENST00000488320 TGIF2-C20orf24A0A0A6YYL0 155 aa5.27□□□□□ -1.57
COL17A1-207ENST00000488320 RPL37AP8A6NKH3 93 aa5.27□□□□□ -1.57
COL17A1-207ENST00000488320 KIAA0087Q14695 138 aa5.27□□□□□ -1.57
COL17A1-207ENST00000488320 FP248Q71RG6 208 aaPredicted RBP5.27□□□□□ -1.57
COL17A1-207ENST00000488320 MRPL55Q7Z7F7 128 aaKnown RBP5.27□□□□□ -1.57
COL17A1-207ENST00000488320 TIMM21Q9BVV7 248 aa5.27□□□□□ -1.57
COL17A1-207ENST00000488320 XAGE1AQ9HD64 81 aa5.27□□□□□ -1.57
COL17A1-207ENST00000488320 IFITM10A6NMD0 228 aa5.26□□□□□ -1.57
COL17A1-207ENST00000488320 SMKR1H3BMG3 65 aa5.26□□□□□ -1.57
COL17A1-207ENST00000488320 GATCO43716 136 aaKnown RBP5.26□□□□□ -1.57
COL17A1-207ENST00000488320 PDE6DO43924 150 aa5.26□□□□□ -1.57
COL17A1-207ENST00000488320 RAB4AP20338 218 aa5.26□□□□□ -1.57
COL17A1-207ENST00000488320 HBBP68871 147 aa5.26□□□□□ -1.57
COL17A1-207ENST00000488320 KRTAP13-3Q3SY46 172 aa5.26□□□□□ -1.57
COL17A1-207ENST00000488320 A8MWL6 223 aa5.25□□□□□ -1.57
COL17A1-207ENST00000488320 PPP1R17O96001 155 aa5.25□□□□□ -1.57
COL17A1-207ENST00000488320 PRSS2P07478 247 aa5.25□□□□□ -1.57
COL17A1-207ENST00000488320 SUMO2P61956 95 aaKnown RBP5.25□□□□□ -1.57
COL17A1-207ENST00000488320 SPAG11AQ6PDA7 123 aa5.25□□□□□ -1.57
COL17A1-207ENST00000488320 LINC00167Q96N53 147 aa5.25□□□□□ -1.57
COL17A1-207ENST00000488320 TMEM191AQ9H0A3 160 aa5.25□□□□□ -1.57
COL17A1-207ENST00000488320 A0A1B0GVG6 124 aa5.24□□□□□ -1.57
COL17A1-207ENST00000488320 GAGE10A6NGK3 116 aa5.24□□□□□ -1.57
COL17A1-207ENST00000488320 TEX46H3BTG2 121 aa5.24□□□□□ -1.57
COL17A1-207ENST00000488320 CKS1BP61024 79 aa5.24□□□□□ -1.57
COL17A1-207ENST00000488320 RPL39P62891 51 aaKnown RBP5.24□□□□□ -1.57
COL17A1-207ENST00000488320 AMN1Q8IY45 258 aa5.24□□□□□ -1.57
COL17A1-207ENST00000488320 OCC1Q8TAD7 63 aa5.24□□□□□ -1.57
COL17A1-207ENST00000488320 TOMM7Q9P0U1 55 aa5.24□□□□□ -1.57
COL17A1-207ENST00000488320 TP73-AS1Q9UF72 201 aa5.24□□□□□ -1.57
COL17A1-207ENST00000488320 K7EN84 100 aa5.23□□□□□ -1.57
COL17A1-207ENST00000488320 PPP1R2P9O14990 202 aa5.23□□□□□ -1.57
COL17A1-207ENST00000488320 MT1HP80294 61 aa5.23□□□□□ -1.57
COL17A1-207ENST00000488320 C6orf226Q5I0X4 101 aa5.23□□□□□ -1.57
COL17A1-207ENST00000488320 C3orf22Q8N5N4 141 aa5.23□□□□□ -1.57
COL17A1-207ENST00000488320 A0A1B0GUT8 65 aa5.22□□□□□ -1.57
COL17A1-207ENST00000488320 RPL32P62910 135 aaKnown RBP5.22□□□□□ -1.57
COL17A1-207ENST00000488320 MRPS36P82909 103 aaKnown RBP5.22□□□□□ -1.57
COL17A1-207ENST00000488320 SPANXA1Q9NS26 97 aa5.22□□□□□ -1.57
COL17A1-207ENST00000488320 TCAPO15273 167 aa5.21□□□□□ -1.58
COL17A1-207ENST00000488320 DAND5Q8N907 189 aa5.21□□□□□ -1.58
COL17A1-207ENST00000488320 NRACQ8N912 160 aa5.21□□□□□ -1.58
COL17A1-207ENST00000488320 FAM104AQ969W3 186 aa5.21□□□□□ -1.58
COL17A1-207ENST00000488320 KANTRA0A1W2PQU2 76 aa5.2□□□□□ -1.58
COL17A1-207ENST00000488320 M0R2T5 61 aa5.2□□□□□ -1.58
COL17A1-207ENST00000488320 KRTAP10-6P60371 365 aaPredicted RBP5.2□□□□□ -1.58
COL17A1-207ENST00000488320 PNRC1Q12796 327 aaPredicted RBP5.2□□□□□ -1.58
COL17A1-207ENST00000488320 Q6ZN92 141 aa5.2□□□□□ -1.58
COL17A1-207ENST00000488320 KRTAP13-1Q8IUC0 172 aa5.2□□□□□ -1.58
COL17A1-207ENST00000488320 MRPL18Q9H0U6 180 aaKnown RBP5.2□□□□□ -1.58
COL17A1-207ENST00000488320 HIGD1CA8MV81 97 aa5.19□□□□□ -1.58
COL17A1-207ENST00000488320 PRLHP81277 87 aa5.19□□□□□ -1.58
COL17A1-207ENST00000488320 RIGQ13278 110 aa5.19□□□□□ -1.58
COL17A1-207ENST00000488320 FAM231DQ6ZW35 169 aa5.19□□□□□ -1.58
COL17A1-207ENST00000488320 FAM19A1Q7Z5A9 133 aa5.19□□□□□ -1.58
COL17A1-207ENST00000488320 LINC01561Q8N1V8 128 aa5.19□□□□□ -1.58
COL17A1-207ENST00000488320 NKAPP1Q8N9T2 125 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms