RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 CHTF8P0CG12 524 aa8.2□□□□□ -1.1
HDAC6-227ENST00000485102 ESDP10768 282 aa8.2□□□□□ -1.1
HDAC6-227ENST00000485102 KIAA1644Q3SXP7 199 aa8.2□□□□□ -1.1
HDAC6-227ENST00000485102 CFAP161Q6P656 301 aa8.2□□□□□ -1.1
HDAC6-227ENST00000485102 MRPL52Q86TS9 123 aaKnown RBP8.2□□□□□ -1.1
HDAC6-227ENST00000485102 C7orf33Q8WU49 177 aa8.2□□□□□ -1.1
HDAC6-227ENST00000485102 SPANXA1Q9NS26 97 aa8.19□□□□□ -1.1
HDAC6-227ENST00000485102 CYSLTR1Q9Y271 337 aa8.19□□□□□ -1.1
HDAC6-227ENST00000485102 LOC389332A0A1B0GUA5 103 aa8.18□□□□□ -1.1
HDAC6-227ENST00000485102 GAS8-AS1O95177 125 aa8.18□□□□□ -1.1
HDAC6-227ENST00000485102 IFI27P40305 119 aaPredicted RBP8.18□□□□□ -1.1
HDAC6-227ENST00000485102 RNASEKQ6P5S7 137 aaKnown RBP8.18□□□□□ -1.1
HDAC6-227ENST00000485102 C15orf56Q8N910 161 aa8.18□□□□□ -1.1
HDAC6-227ENST00000485102 OR5A1Q8NGJ0 315 aa8.18□□□□□ -1.1
HDAC6-227ENST00000485102 LINC01546A6NGU7 62 aa8.17□□□□□ -1.1
HDAC6-227ENST00000485102 LINC00614P0C842 121 aa8.17□□□□□ -1.1
HDAC6-227ENST00000485102 FGF6P10767 208 aa8.17□□□□□ -1.1
HDAC6-227ENST00000485102 COX6A2Q02221 97 aa8.17□□□□□ -1.1
HDAC6-227ENST00000485102 CHCHD1Q96BP2 118 aaKnown RBP8.17□□□□□ -1.1
HDAC6-227ENST00000485102 PYGO1Q9Y3Y4 419 aa8.17□□□□□ -1.1
HDAC6-227ENST00000485102 A0A0J9YXV3 536 aa8.16□□□□□ -1.1
HDAC6-227ENST00000485102 TRGC2P03986 189 aa8.16□□□□□ -1.1
HDAC6-227ENST00000485102 KRTAP10-8P60410 259 aa8.16□□□□□ -1.1
HDAC6-227ENST00000485102 PRR3P79522 188 aaKnown RBP8.16□□□□□ -1.1
HDAC6-227ENST00000485102 Q6ZN92 141 aa8.16□□□□□ -1.1
HDAC6-227ENST00000485102 MRPS36P82909 103 aaKnown RBP8.15□□□□□ -1.1
HDAC6-227ENST00000485102 BAGE3Q86Y29 109 aa8.15□□□□□ -1.1
HDAC6-227ENST00000485102 C18orf32Q8TCD1 76 aa8.15□□□□□ -1.1
HDAC6-227ENST00000485102 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.14□□□□□ -1.11
HDAC6-227ENST00000485102 GVQW2A0A096LPI5 108 aaPredicted RBP8.14□□□□□ -1.11
HDAC6-227ENST00000485102 IGKV2-29A2NJV5 120 aaPredicted RBP8.14□□□□□ -1.11
HDAC6-227ENST00000485102 SPINK6Q6UWN8 80 aa8.14□□□□□ -1.11
HDAC6-227ENST00000485102 C2orf66Q6UXQ4 117 aa8.14□□□□□ -1.11
HDAC6-227ENST00000485102 TMEM141Q96I45 108 aa8.14□□□□□ -1.11
HDAC6-227ENST00000485102 GAGE12HA6NDE8 117 aa8.13□□□□□ -1.11
HDAC6-227ENST00000485102 C1orf196B1AJZ1 125 aa8.13□□□□□ -1.11
HDAC6-227ENST00000485102 MAJINQ3KP22 176 aa8.13□□□□□ -1.11
HDAC6-227ENST00000485102 ZNF664Q8N3J9 261 aa8.13□□□□□ -1.11
HDAC6-227ENST00000485102 STPG4Q8N801 248 aa8.13□□□□□ -1.11
HDAC6-227ENST00000485102 TIMM17AQ99595 171 aa8.13□□□□□ -1.11
HDAC6-227ENST00000485102 C2orf88Q9BSF0 95 aa8.13□□□□□ -1.11
HDAC6-227ENST00000485102 LINC00474Q9P2X8 69 aa8.13□□□□□ -1.11
HDAC6-227ENST00000485102 UBE2D4Q9Y2X8 147 aa8.13□□□□□ -1.11
HDAC6-227ENST00000485102 SCO1O75880 301 aa8.12□□□□□ -1.11
HDAC6-227ENST00000485102 HBDP02042 147 aa8.12□□□□□ -1.11
HDAC6-227ENST00000485102 SEC11AP67812 179 aa8.12□□□□□ -1.11
HDAC6-227ENST00000485102 SRSF9Q13242 221 aaKnown RBP eCLIP8.12□□□□□ -1.11
HDAC6-227ENST00000485102 SS18Q15532 418 aa8.12□□□□□ -1.11
HDAC6-227ENST00000485102 ERASQ7Z444 233 aa8.12□□□□□ -1.11
HDAC6-227ENST00000485102 TOMM6Q96B49 74 aa8.12□□□□□ -1.11
HDAC6-227ENST00000485102 CDC42SE2Q9NRR3 84 aa8.12□□□□□ -1.11
HDAC6-227ENST00000485102 PKIGQ9Y2B9 76 aa8.12□□□□□ -1.11
HDAC6-227ENST00000485102 IGKV2-24A0A0C4DH68 120 aa8.11□□□□□ -1.11
HDAC6-227ENST00000485102 HSBP1O75506 76 aa8.11□□□□□ -1.11
HDAC6-227ENST00000485102 ATP5LO75964 103 aa8.11□□□□□ -1.11
HDAC6-227ENST00000485102 REG3GQ6UW15 175 aa8.11□□□□□ -1.11
HDAC6-227ENST00000485102 TEX43Q6ZNM6 134 aa8.11□□□□□ -1.11
HDAC6-227ENST00000485102 CHCHD10Q8WYQ3 142 aaPredicted RBP8.11□□□□□ -1.11
HDAC6-227ENST00000485102 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.1□□□□□ -1.11
HDAC6-227ENST00000485102 HIGD2BQ4VC39 106 aa8.1□□□□□ -1.11
HDAC6-227ENST00000485102 SCGB3A1Q96QR1 104 aa8.1□□□□□ -1.11
HDAC6-227ENST00000485102 VCX2Q9H322 139 aa8.1□□□□□ -1.11
HDAC6-227ENST00000485102 A0A096LNI7 61 aa8.09□□□□□ -1.11
HDAC6-227ENST00000485102 FOXI1Q12951 378 aa8.09□□□□□ -1.11
HDAC6-227ENST00000485102 Q6ZRP5 223 aa8.08□□□□□ -1.12
HDAC6-227ENST00000485102 PACRGQ96M98 296 aaPredicted RBP8.08□□□□□ -1.12
HDAC6-227ENST00000485102 IGIPA6NJ69 53 aa8.07□□□□□ -1.12
HDAC6-227ENST00000485102 RPL39P62891 51 aaKnown RBP8.07□□□□□ -1.12
HDAC6-227ENST00000485102 ODF1Q14990 250 aa8.07□□□□□ -1.12
HDAC6-227ENST00000485102 HSPB8Q9UJY1 196 aa8.07□□□□□ -1.12
HDAC6-227ENST00000485102 IGHV1-58A0A0C4DH39 117 aa8.06□□□□□ -1.12
HDAC6-227ENST00000485102 IGKV3OR2-268A0A0C4DH90 116 aa8.06□□□□□ -1.12
HDAC6-227ENST00000485102 LINC00959A0A1B0GUT2 108 aa8.06□□□□□ -1.12
HDAC6-227ENST00000485102 IFITM10A6NMD0 228 aa8.06□□□□□ -1.12
HDAC6-227ENST00000485102 IGLV4-3A0A075B6K6 122 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST1H2BKO60814 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 APOMO95445 188 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST1H2BJP06899 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST1H2BOP23527 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST1H2BBP33778 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST1H2BDP58876 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST1H2BCP62807 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST2H2BEQ16778 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.05□□□□□ -1.12
HDAC6-227ENST00000485102 CD164L2Q6UWJ8 174 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST1H2BHQ93079 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST1H2BNQ99877 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 HIST1H2BMQ99879 126 aa8.05□□□□□ -1.12
HDAC6-227ENST00000485102 S100A6P06703 90 aa8.04□□□□□ -1.12
HDAC6-227ENST00000485102 AKR1D1P51857 326 aa8.04□□□□□ -1.12
HDAC6-227ENST00000485102 PMVKQ15126 192 aa8.04□□□□□ -1.12
HDAC6-227ENST00000485102 Q6ZUT4 128 aa8.04□□□□□ -1.12
HDAC6-227ENST00000485102 CARD19Q96LW7 228 aa8.04□□□□□ -1.12
HDAC6-227ENST00000485102 AMELXQ99217 191 aa8.04□□□□□ -1.12
HDAC6-227ENST00000485102 TRAV13-1A0A0B4J241 112 aa8.03□□□□□ -1.12
HDAC6-227ENST00000485102 SERF1AO75920 110 aa8.03□□□□□ -1.12
HDAC6-227ENST00000485102 LEPROTL1O95214 131 aa8.03□□□□□ -1.12
HDAC6-227ENST00000485102 HERVK_113P63121 156 aa8.03□□□□□ -1.12
HDAC6-227ENST00000485102 PDZD11Q5EBL8 140 aa8.03□□□□□ -1.12
HDAC6-227ENST00000485102 COA6Q5JTJ3 125 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms