RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 MRPL54Q6P161 138 aaKnown RBP7.55□□□□□ -1.2
SQSTM1-207ENST00000481335 ORMDL3Q8N138 153 aa7.55□□□□□ -1.2
SQSTM1-207ENST00000481335 MRPL35Q9NZE8 188 aaKnown RBP7.55□□□□□ -1.2
SQSTM1-207ENST00000481335 LAMTOR2Q9Y2Q5 125 aa7.55□□□□□ -1.2
SQSTM1-207ENST00000481335 IGHV3OR16-9A0A0B4J2B5 98 aa7.54□□□□□ -1.2
SQSTM1-207ENST00000481335 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.54□□□□□ -1.2
SQSTM1-207ENST00000481335 NPYP01303 97 aa7.54□□□□□ -1.2
SQSTM1-207ENST00000481335 IFI27P40305 119 aaPredicted RBP7.54□□□□□ -1.2
SQSTM1-207ENST00000481335 RPL39P62891 51 aaKnown RBP7.54□□□□□ -1.2
SQSTM1-207ENST00000481335 PNRC1Q12796 327 aaPredicted RBP7.54□□□□□ -1.2
SQSTM1-207ENST00000481335 GAGE2BQ13066 116 aa7.54□□□□□ -1.2
SQSTM1-207ENST00000481335 C5orf38Q86SI9 138 aa7.54□□□□□ -1.2
SQSTM1-207ENST00000481335 PYGO1Q9Y3Y4 419 aa7.54□□□□□ -1.2
SQSTM1-207ENST00000481335 A0A0J9YXV3 536 aa7.53□□□□□ -1.2
SQSTM1-207ENST00000481335 PRSS47A8MTI9 375 aa7.53□□□□□ -1.2
SQSTM1-207ENST00000481335 RAB5AP20339 215 aa7.53□□□□□ -1.2
SQSTM1-207ENST00000481335 IMMP2LQ96T52 175 aa7.53□□□□□ -1.2
SQSTM1-207ENST00000481335 TGIF2-C20orf24A0A0A6YYL0 155 aa7.52□□□□□ -1.21
SQSTM1-207ENST00000481335 IFITM10A6NMD0 228 aa7.52□□□□□ -1.21
SQSTM1-207ENST00000481335 NDUFA1O15239 70 aa7.52□□□□□ -1.21
SQSTM1-207ENST00000481335 TLX1NBP0CAT3 122 aa7.52□□□□□ -1.21
SQSTM1-207ENST00000481335 RPL18AQ02543 176 aaKnown RBP7.52□□□□□ -1.21
SQSTM1-207ENST00000481335 SRSF9Q13242 221 aaKnown RBP eCLIP7.52□□□□□ -1.21
SQSTM1-207ENST00000481335 TMEM136Q6ZRR5 245 aa7.52□□□□□ -1.21
SQSTM1-207ENST00000481335 ORAOV1Q8WV07 137 aa7.52□□□□□ -1.21
SQSTM1-207ENST00000481335 FAM104AQ969W3 186 aa7.52□□□□□ -1.21
SQSTM1-207ENST00000481335 NPSP0C0P6 89 aa7.51□□□□□ -1.21
SQSTM1-207ENST00000481335 ANAPC16Q96DE5 110 aa7.51□□□□□ -1.21
SQSTM1-207ENST00000481335 PRELID3AQ96N28 172 aa7.51□□□□□ -1.21
SQSTM1-207ENST00000481335 A0A087WZ39 114 aa7.5□□□□□ -1.21
SQSTM1-207ENST00000481335 A0A1W2PNN7 141 aa7.5□□□□□ -1.21
SQSTM1-207ENST00000481335 K7EMI3 77 aa7.5□□□□□ -1.21
SQSTM1-207ENST00000481335 C9orf116Q5BN46 136 aaPredicted RBP7.5□□□□□ -1.21
SQSTM1-207ENST00000481335 LINC01561Q8N1V8 128 aa7.5□□□□□ -1.21
SQSTM1-207ENST00000481335 MT-ND4LP03901 98 aa7.49□□□□□ -1.21
SQSTM1-207ENST00000481335 TMEM141Q96I45 108 aa7.49□□□□□ -1.21
SQSTM1-207ENST00000481335 MAP1LC3AQ9H492 121 aa7.49□□□□□ -1.21
SQSTM1-207ENST00000481335 IGLV4-3A0A075B6K6 122 aa7.48□□□□□ -1.21
SQSTM1-207ENST00000481335 KRTAP10-8P60410 259 aa7.48□□□□□ -1.21
SQSTM1-207ENST00000481335 TEX43Q6ZNM6 134 aa7.48□□□□□ -1.21
SQSTM1-207ENST00000481335 OPRPNQ99935 248 aaPredicted RBP7.48□□□□□ -1.21
SQSTM1-207ENST00000481335 C2orf88Q9BSF0 95 aa7.48□□□□□ -1.21
SQSTM1-207ENST00000481335 PSORS1C2Q9UIG4 136 aa7.48□□□□□ -1.21
SQSTM1-207ENST00000481335 TRBV30A0A0K0K1B3 111 aa7.47□□□□□ -1.21
SQSTM1-207ENST00000481335 MT-ND6P03923 174 aa7.47□□□□□ -1.21
SQSTM1-207ENST00000481335 RAB14P61106 215 aa7.47□□□□□ -1.21
SQSTM1-207ENST00000481335 ORMDL2Q53FV1 153 aa7.47□□□□□ -1.21
SQSTM1-207ENST00000481335 LINC00242Q5T6M2 205 aa7.47□□□□□ -1.21
SQSTM1-207ENST00000481335 Q6ZN92 141 aa7.47□□□□□ -1.21
SQSTM1-207ENST00000481335 CYSLTR1Q9Y271 337 aa7.47□□□□□ -1.21
SQSTM1-207ENST00000481335 G0S2P27469 103 aa7.46□□□□□ -1.22
SQSTM1-207ENST00000481335 Q8N8P6 123 aa7.46□□□□□ -1.22
SQSTM1-207ENST00000481335 C6orf48Q9UBA6 75 aa7.46□□□□□ -1.22
SQSTM1-207ENST00000481335 LRP2P98164 4655 aa7.45□□□□□ -1.22
SQSTM1-207ENST00000481335 UBE2D1P51668 147 aa7.45□□□□□ -1.22
SQSTM1-207ENST00000481335 KIAA0087Q14695 138 aa7.45□□□□□ -1.22
SQSTM1-207ENST00000481335 PAPPA-AS1Q5QFB9 102 aa7.45□□□□□ -1.22
SQSTM1-207ENST00000481335 C2orf66Q6UXQ4 117 aa7.45□□□□□ -1.22
SQSTM1-207ENST00000481335 NXT2Q9NPJ8 142 aaKnown RBP7.45□□□□□ -1.22
SQSTM1-207ENST00000481335 NDUFC2-KCTD14E9PQ53 114 aa7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 SEC11AP67812 179 aa7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 ODF1Q14990 250 aa7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 C1orf137Q5JT78 98 aa7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 C10orf25Q5T742 122 aa7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 UNQ6190/PRO20217Q6UXQ8 127 aa7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 PHF5AQ7RTV0 110 aaKnown RBP7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 FAM19A3Q7Z5A8 133 aa7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 PACRGQ96M98 296 aaPredicted RBP7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 AMELXQ99217 191 aa7.44□□□□□ -1.22
SQSTM1-207ENST00000481335 LOC389332A0A1B0GUA5 103 aa7.43□□□□□ -1.22
SQSTM1-207ENST00000481335 DIRC1Q969H9 104 aa7.43□□□□□ -1.22
SQSTM1-207ENST00000481335 VCX2Q9H322 139 aa7.43□□□□□ -1.22
SQSTM1-207ENST00000481335 TRAV9-1A0A075B6T8 112 aa7.42□□□□□ -1.22
SQSTM1-207ENST00000481335 LINC01549A6NIU2 74 aa7.42□□□□□ -1.22
SQSTM1-207ENST00000481335 IGLV7-43P04211 117 aa7.42□□□□□ -1.22
SQSTM1-207ENST00000481335 LINC00173Q6ZV60 143 aa7.42□□□□□ -1.22
SQSTM1-207ENST00000481335 Q8IZM0 81 aa7.42□□□□□ -1.22
SQSTM1-207ENST00000481335 TIMM17AQ99595 171 aa7.42□□□□□ -1.22
SQSTM1-207ENST00000481335 CTDSP1Q9GZU7 261 aa7.42□□□□□ -1.22
SQSTM1-207ENST00000481335 IGIPA6NJ69 53 aa7.41□□□□□ -1.22
SQSTM1-207ENST00000481335 PRSS2P07478 247 aa7.41□□□□□ -1.22
SQSTM1-207ENST00000481335 HERVK_113P63121 156 aa7.41□□□□□ -1.22
SQSTM1-207ENST00000481335 GAGE2EQ4V326 116 aa7.41□□□□□ -1.22
SQSTM1-207ENST00000481335 GAGE2DQ9UEU5 116 aa7.41□□□□□ -1.22
SQSTM1-207ENST00000481335 M0QXV9 152 aa7.4□□□□□ -1.22
SQSTM1-207ENST00000481335 CLLU1Q5K131 121 aa7.4□□□□□ -1.22
SQSTM1-207ENST00000481335 UQCC3Q6UW78 93 aa7.4□□□□□ -1.22
SQSTM1-207ENST00000481335 FAM19A5Q7Z5A7 132 aaPredicted RBP7.4□□□□□ -1.22
SQSTM1-207ENST00000481335 FAM168BA1KXE4 195 aa7.39□□□□□ -1.23
SQSTM1-207ENST00000481335 H0Y9J4 135 aa7.39□□□□□ -1.23
SQSTM1-207ENST00000481335 CXCL5P42830 114 aa7.39□□□□□ -1.23
SQSTM1-207ENST00000481335 CKS1BP61024 79 aa7.39□□□□□ -1.23
SQSTM1-207ENST00000481335 UBE2BP63146 152 aa7.38□□□□□ -1.23
SQSTM1-207ENST00000481335 C2orf82Q6UX34 121 aa7.38□□□□□ -1.23
SQSTM1-207ENST00000481335 TOMM6Q96B49 74 aa7.38□□□□□ -1.23
SQSTM1-207ENST00000481335 IGLV1-50A0A075B6I6 118 aa7.37□□□□□ -1.23
SQSTM1-207ENST00000481335 C6orf226Q5I0X4 101 aa7.37□□□□□ -1.23
SQSTM1-207ENST00000481335 C9orf129Q5T035 196 aaKnown RBP7.37□□□□□ -1.23
SQSTM1-207ENST00000481335 KRTAP7-1Q8IUC3 87 aa7.37□□□□□ -1.23
SQSTM1-207ENST00000481335 ALKBH7Q9BT30 221 aaPredicted RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms