RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 UBE2D4Q9Y2X8 147 aa7.59□□□□□ -1.19
MSH5-SAPCD1-205ENST00000476085 C1orf196B1AJZ1 125 aa7.58□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 D6R8Y8 96 aa7.58□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 PTTG1IPP53801 180 aa7.58□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 RHEBQ15382 184 aa7.58□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 NDUFA5Q16718 116 aa7.58□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 C10orf91Q5T1B1 145 aa7.58□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 CARHSP1Q9Y2V2 147 aaKnown RBP7.58□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 ZNF561-AS1K7EIQ3 104 aa7.57□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 TNFRSF6BO95407 300 aa7.57□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 ODF1Q14990 250 aa7.57□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 TMEM136Q6ZRR5 245 aa7.57□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 TMEM18Q96B42 140 aa7.57□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 TIMM21Q9BVV7 248 aa7.57□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 LAMTOR2Q9Y2Q5 125 aa7.57□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 IGLV4-69A0A075B6H9 119 aa7.56□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 LOC100996750A0A140TA64 210 aa7.56□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 A0A1W2PNN7 141 aa7.56□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 Q6ZRP5 223 aa7.56□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 C2orf48Q96LS8 159 aa7.56□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 KRTAP4-6Q9BYQ5 205 aa7.56□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 LOC107984640A0A0U1RRK4 108 aa7.55□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 COX7A2LO14548 114 aa7.55□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 COX19Q49B96 90 aa7.55□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 PRELID3AQ96N28 172 aa7.55□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 SMIM2Q9BVW6 85 aa7.55□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.54□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 RAB5AP20339 215 aa7.54□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 REG3GQ6UW15 175 aa7.54□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 SVBPQ8N300 66 aa7.54□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 RPS10P5Q9NQ39 176 aa7.54□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 PRSS47A8MTI9 375 aa7.53□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 SNAPINO95295 136 aa7.53□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 APOMO95445 188 aa7.53□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 NPYP01303 97 aa7.53□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 RNF151Q2KHN1 245 aa7.53□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 RNASE13Q5GAN3 156 aaKnown RBP7.53□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 Q6ZUT4 128 aa7.53□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 MAP1LC3AQ9H492 121 aa7.53□□□□□ -1.2
MSH5-SAPCD1-205ENST00000476085 TRAV13-1A0A0B4J241 112 aa7.52□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 IGHV3OR16-9A0A0B4J2B5 98 aa7.52□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 APOC3P02656 99 aa7.52□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 MALP21145 153 aa7.52□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 GAGE2BQ13066 116 aa7.52□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 C5orf38Q86SI9 138 aa7.52□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 GNB1LQ9BYB4 327 aa7.52□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 K7EMI3 77 aa7.51□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 MT-ND6P03923 174 aa7.51□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 C9orf116Q5BN46 136 aaPredicted RBP7.51□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 CAMK2N2Q96S95 79 aa7.51□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 PSORS1C2Q9UIG4 136 aa7.51□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 F8WDY8 70 aa7.5□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 G0S2P27469 103 aa7.5□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 RPL39P62891 51 aaKnown RBP7.5□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 MRPS36P82909 103 aaKnown RBP7.5□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 LOC389332A0A1B0GUA5 103 aa7.49□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 Q8N8P6 123 aa7.49□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 OR10D4PQ8NGN7 298 aa7.49□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 OPRPNQ99935 248 aaPredicted RBP7.49□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 NXT2Q9NPJ8 142 aaKnown RBP7.49□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 SPANXA1Q9NS26 97 aa7.49□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 MRPL35Q9NZE8 188 aaKnown RBP7.49□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 RNF213Q63HN8 5207 aa7.49□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 TLX1NBP0CAT3 122 aa7.48□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 ORMDL2Q53FV1 153 aa7.48□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 IFI27P40305 119 aaPredicted RBP7.47□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 SPAG11BQ08648 103 aa7.47□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 KIAA0087Q14695 138 aa7.47□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 C10orf25Q5T742 122 aa7.47□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 PHF5AQ7RTV0 110 aaKnown RBP7.47□□□□□ -1.21
MSH5-SAPCD1-205ENST00000476085 KRTAP11-1Q8IUC1 163 aa7.46□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 KRTAP7-1Q8IUC3 87 aa7.46□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 PYGO1Q9Y3Y4 419 aa7.46□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 LINC01549A6NIU2 74 aa7.45□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 RPL18AQ02543 176 aaKnown RBP7.45□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 FABP9Q0Z7S8 132 aa7.45□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 KIAA1644Q3SXP7 199 aa7.45□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 ORAOV1Q8WV07 137 aa7.45□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 MRPL18Q9H0U6 180 aaKnown RBP7.45□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 CYSLTR1Q9Y271 337 aa7.45□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 A0A087WZ39 114 aa7.44□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 NPSP0C0P6 89 aa7.44□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 C1orf137Q5JT78 98 aa7.44□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 UNQ6190/PRO20217Q6UXQ8 127 aa7.44□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 ALKBH7Q9BT30 221 aaPredicted RBP7.44□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 C6orf48Q9UBA6 75 aa7.44□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 TGIF2-C20orf24A0A0A6YYL0 155 aa7.43□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 FAM168BA1KXE4 195 aa7.43□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 NDUFA1O15239 70 aa7.43□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 IGLV7-43P04211 117 aa7.43□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 PAPPA-AS1Q5QFB9 102 aa7.43□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 LINC00242Q5T6M2 205 aa7.43□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 C2orf66Q6UXQ4 117 aa7.43□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 Q6ZN92 141 aa7.43□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 TRAPPC1Q9Y5R8 145 aa7.43□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 LPAP08519 4548 aa7.42□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 IFITM10A6NMD0 228 aa7.42□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 TMEM141Q96I45 108 aa7.42□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 C2orf88Q9BSF0 95 aa7.42□□□□□ -1.22
MSH5-SAPCD1-205ENST00000476085 IGLV4-3A0A075B6K6 122 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms