RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 C10orf91Q5T1B1 145 aa11.65□□□□□ -0.54
CCDC88B-206ENST00000473405 C2orf48Q96LS8 159 aa11.65□□□□□ -0.54
CCDC88B-206ENST00000473405 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.64□□□□□ -0.55
CCDC88B-206ENST00000473405 TCAPO15273 167 aa11.64□□□□□ -0.55
CCDC88B-206ENST00000473405 NDUFA5Q16718 116 aa11.64□□□□□ -0.55
CCDC88B-206ENST00000473405 A0A1W2PNN7 141 aa11.63□□□□□ -0.55
CCDC88B-206ENST00000473405 F8W036 122 aa11.63□□□□□ -0.55
CCDC88B-206ENST00000473405 SPAG11BQ08648 103 aa11.63□□□□□ -0.55
CCDC88B-206ENST00000473405 ODF1Q14990 250 aa11.63□□□□□ -0.55
CCDC88B-206ENST00000473405 SPINK6Q6UWN8 80 aa11.63□□□□□ -0.55
CCDC88B-206ENST00000473405 Q6ZRP5 223 aa11.63□□□□□ -0.55
CCDC88B-206ENST00000473405 OPRPNQ99935 248 aaPredicted RBP11.63□□□□□ -0.55
CCDC88B-206ENST00000473405 RNF213Q63HN8 5207 aa11.62□□□□□ -0.55
CCDC88B-206ENST00000473405 S100A8P05109 93 aa11.62□□□□□ -0.55
CCDC88B-206ENST00000473405 SRSF9Q13242 221 aaKnown RBP eCLIP11.62□□□□□ -0.55
CCDC88B-206ENST00000473405 SEC11CQ9BY50 192 aa11.62□□□□□ -0.55
CCDC88B-206ENST00000473405 SPANXA1Q9NS26 97 aa11.62□□□□□ -0.55
CCDC88B-206ENST00000473405 IGHV3OR16-9A0A0B4J2B5 98 aa11.61□□□□□ -0.55
CCDC88B-206ENST00000473405 A0A0J9YXV3 536 aa11.61□□□□□ -0.55
CCDC88B-206ENST00000473405 MRPS36P82909 103 aaKnown RBP11.61□□□□□ -0.55
CCDC88B-206ENST00000473405 OR10D4PQ8NGN7 298 aa11.61□□□□□ -0.55
CCDC88B-206ENST00000473405 CARHSP1Q9Y2V2 147 aaKnown RBP11.61□□□□□ -0.55
CCDC88B-206ENST00000473405 PPBPP02775 128 aa11.6□□□□□ -0.55
CCDC88B-206ENST00000473405 RPL18AQ02543 176 aaKnown RBP11.6□□□□□ -0.55
CCDC88B-206ENST00000473405 C9orf116Q5BN46 136 aaPredicted RBP11.59□□□□□ -0.55
CCDC88B-206ENST00000473405 ORAOV1Q8WV07 137 aa11.59□□□□□ -0.55
CCDC88B-206ENST00000473405 IFITM10A6NMD0 228 aa11.58□□□□□ -0.56
CCDC88B-206ENST00000473405 KRTAP10-8P60410 259 aa11.58□□□□□ -0.56
CCDC88B-206ENST00000473405 RNF151Q2KHN1 245 aa11.58□□□□□ -0.56
CCDC88B-206ENST00000473405 REG3GQ6UW15 175 aa11.58□□□□□ -0.56
CCDC88B-206ENST00000473405 ATP5L2Q7Z4Y8 100 aa11.58□□□□□ -0.56
CCDC88B-206ENST00000473405 ORMDL3Q8N138 153 aa11.58□□□□□ -0.56
CCDC88B-206ENST00000473405 MRPL35Q9NZE8 188 aaKnown RBP11.57□□□□□ -0.56
CCDC88B-206ENST00000473405 C10orf25Q5T742 122 aa11.56□□□□□ -0.56
CCDC88B-206ENST00000473405 PRELID3AQ96N28 172 aa11.56□□□□□ -0.56
CCDC88B-206ENST00000473405 PSORS1C2Q9UIG4 136 aa11.56□□□□□ -0.56
CCDC88B-206ENST00000473405 PNRC1Q12796 327 aaPredicted RBP11.55□□□□□ -0.56
CCDC88B-206ENST00000473405 TMEM136Q6ZRR5 245 aa11.55□□□□□ -0.56
CCDC88B-206ENST00000473405 F8WDY8 70 aa11.54□□□□□ -0.56
CCDC88B-206ENST00000473405 PHF5AQ7RTV0 110 aaKnown RBP11.54□□□□□ -0.56
CCDC88B-206ENST00000473405 PYGO1Q9Y3Y4 419 aa11.54□□□□□ -0.56
CCDC88B-206ENST00000473405 IGLV4-3A0A075B6K6 122 aa11.53□□□□□ -0.56
CCDC88B-206ENST00000473405 NDUFA1O15239 70 aa11.53□□□□□ -0.56
CCDC88B-206ENST00000473405 RAB5AP20339 215 aa11.53□□□□□ -0.56
CCDC88B-206ENST00000473405 IFI27P40305 119 aaPredicted RBP11.53□□□□□ -0.56
CCDC88B-206ENST00000473405 UNQ6190/PRO20217Q6UXQ8 127 aa11.53□□□□□ -0.56
CCDC88B-206ENST00000473405 C6orf48Q9UBA6 75 aa11.53□□□□□ -0.56
CCDC88B-206ENST00000473405 A0A087WZ39 114 aa11.52□□□□□ -0.57
CCDC88B-206ENST00000473405 TGIF2-C20orf24A0A0A6YYL0 155 aa11.52□□□□□ -0.57
CCDC88B-206ENST00000473405 PRSS47A8MTI9 375 aa11.52□□□□□ -0.57
CCDC88B-206ENST00000473405 MT-ND6P03923 174 aa11.52□□□□□ -0.57
CCDC88B-206ENST00000473405 LINC00242Q5T6M2 205 aa11.52□□□□□ -0.57
CCDC88B-206ENST00000473405 FAM168BA1KXE4 195 aa11.51□□□□□ -0.57
CCDC88B-206ENST00000473405 TLX1NBP0CAT3 122 aa11.51□□□□□ -0.57
CCDC88B-206ENST00000473405 KIAA0087Q14695 138 aa11.51□□□□□ -0.57
CCDC88B-206ENST00000473405 IMMP2LQ96T52 175 aa11.51□□□□□ -0.57
CCDC88B-206ENST00000473405 TMEM141Q96I45 108 aa11.5□□□□□ -0.57
CCDC88B-206ENST00000473405 LAMTOR2Q9Y2Q5 125 aa11.5□□□□□ -0.57
CCDC88B-206ENST00000473405 LOC389332A0A1B0GUA5 103 aa11.49□□□□□ -0.57
CCDC88B-206ENST00000473405 C1orf137Q5JT78 98 aa11.49□□□□□ -0.57
CCDC88B-206ENST00000473405 KRTAP11-1Q8IUC1 163 aa11.49□□□□□ -0.57
CCDC88B-206ENST00000473405 APOC3P02656 99 aa11.48□□□□□ -0.57
CCDC88B-206ENST00000473405 LINC00173Q6ZV60 143 aa11.48□□□□□ -0.57
CCDC88B-206ENST00000473405 MAP1LC3AQ9H492 121 aa11.48□□□□□ -0.57
CCDC88B-206ENST00000473405 UBE2D1P51668 147 aa11.47□□□□□ -0.57
CCDC88B-206ENST00000473405 KRTAP7-1Q8IUC3 87 aa11.47□□□□□ -0.57
CCDC88B-206ENST00000473405 ZC2HC1BQ5TFG8 222 aa11.46□□□□□ -0.57
CCDC88B-206ENST00000473405 C2orf82Q6UX34 121 aa11.46□□□□□ -0.57
CCDC88B-206ENST00000473405 TEX43Q6ZNM6 134 aa11.46□□□□□ -0.57
CCDC88B-206ENST00000473405 FAM19A5Q7Z5A7 132 aaPredicted RBP11.46□□□□□ -0.57
CCDC88B-206ENST00000473405 SVBPQ8N300 66 aa11.46□□□□□ -0.57
CCDC88B-206ENST00000473405 Q8N8P6 123 aa11.46□□□□□ -0.57
CCDC88B-206ENST00000473405 ANAPC16Q96DE5 110 aa11.46□□□□□ -0.57
CCDC88B-206ENST00000473405 ATP6V1G1O75348 118 aa11.45□□□□□ -0.58
CCDC88B-206ENST00000473405 MT-ND4LP03901 98 aa11.45□□□□□ -0.58
CCDC88B-206ENST00000473405 RHEBQ15382 184 aa11.45□□□□□ -0.58
CCDC88B-206ENST00000473405 GAGE2EQ4V326 116 aa11.45□□□□□ -0.58
CCDC88B-206ENST00000473405 C2orf66Q6UXQ4 117 aa11.45□□□□□ -0.58
CCDC88B-206ENST00000473405 GAGE2DQ9UEU5 116 aa11.45□□□□□ -0.58
CCDC88B-206ENST00000473405 CYSLTR1Q9Y271 337 aa11.45□□□□□ -0.58
CCDC88B-206ENST00000473405 TRBV30A0A0K0K1B3 111 aa11.44□□□□□ -0.58
CCDC88B-206ENST00000473405 IGLV7-43P04211 117 aa11.44□□□□□ -0.58
CCDC88B-206ENST00000473405 AMELXQ99217 191 aa11.44□□□□□ -0.58
CCDC88B-206ENST00000473405 SNAPINO95295 136 aa11.43□□□□□ -0.58
CCDC88B-206ENST00000473405 LINC01561Q8N1V8 128 aa11.43□□□□□ -0.58
CCDC88B-206ENST00000473405 C2orf88Q9BSF0 95 aa11.43□□□□□ -0.58
CCDC88B-206ENST00000473405 CTDSP1Q9GZU7 261 aa11.43□□□□□ -0.58
CCDC88B-206ENST00000473405 IGIPA6NJ69 53 aa11.42□□□□□ -0.58
CCDC88B-206ENST00000473405 NDUFC2-KCTD14E9PQ53 114 aa11.41□□□□□ -0.58
CCDC88B-206ENST00000473405 ORMDL2Q53FV1 153 aa11.41□□□□□ -0.58
CCDC88B-206ENST00000473405 C9orf129Q5T035 196 aaKnown RBP11.41□□□□□ -0.58
CCDC88B-206ENST00000473405 Q6ZN92 141 aa11.41□□□□□ -0.58
CCDC88B-206ENST00000473405 K7EMI3 77 aa11.4□□□□□ -0.58
CCDC88B-206ENST00000473405 M0QXV9 152 aa11.4□□□□□ -0.58
CCDC88B-206ENST00000473405 NPSP0C0P6 89 aa11.4□□□□□ -0.58
CCDC88B-206ENST00000473405 FAM19A3Q7Z5A8 133 aa11.4□□□□□ -0.58
CCDC88B-206ENST00000473405 DIRC1Q969H9 104 aa11.4□□□□□ -0.58
CCDC88B-206ENST00000473405 VCX2Q9H322 139 aa11.39□□□□□ -0.59
CCDC88B-206ENST00000473405 NXT2Q9NPJ8 142 aaKnown RBP11.39□□□□□ -0.59
CCDC88B-206ENST00000473405 RPS10P5Q9NQ39 176 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms