RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 A0A0J9YXV3 536 aa12.27□□□□□ -0.45
COL9A3-210ENST00000472880 PPBPP02775 128 aa12.27□□□□□ -0.45
COL9A3-210ENST00000472880 APOMO95445 188 aa12.26□□□□□ -0.45
COL9A3-210ENST00000472880 NPYP01303 97 aa12.26□□□□□ -0.45
COL9A3-210ENST00000472880 C5orf38Q86SI9 138 aa12.26□□□□□ -0.45
COL9A3-210ENST00000472880 C2orf48Q96LS8 159 aa12.26□□□□□ -0.45
COL9A3-210ENST00000472880 TIMM21Q9BVV7 248 aa12.26□□□□□ -0.45
COL9A3-210ENST00000472880 SEC11CQ9BY50 192 aa12.26□□□□□ -0.45
COL9A3-210ENST00000472880 ORMDL3Q8N138 153 aa12.25□□□□□ -0.45
COL9A3-210ENST00000472880 SMIM2Q9BVW6 85 aa12.25□□□□□ -0.45
COL9A3-210ENST00000472880 TCAPO15273 167 aa12.24□□□□□ -0.45
COL9A3-210ENST00000472880 RPL18AQ02543 176 aaKnown RBP12.24□□□□□ -0.45
COL9A3-210ENST00000472880 SPAG11BQ08648 103 aa12.24□□□□□ -0.45
COL9A3-210ENST00000472880 TMEM136Q6ZRR5 245 aa12.23□□□□□ -0.45
COL9A3-210ENST00000472880 PRELID3AQ96N28 172 aa12.23□□□□□ -0.45
COL9A3-210ENST00000472880 IMMP2LQ96T52 175 aa12.23□□□□□ -0.45
COL9A3-210ENST00000472880 CTDSP1Q9GZU7 261 aa12.23□□□□□ -0.45
COL9A3-210ENST00000472880 A0A1W2PNN7 141 aa12.22□□□□□ -0.45
COL9A3-210ENST00000472880 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.22□□□□□ -0.45
COL9A3-210ENST00000472880 SRSF9Q13242 221 aaKnown RBP eCLIP12.22□□□□□ -0.45
COL9A3-210ENST00000472880 RPL39P62891 51 aaKnown RBP12.21□□□□□ -0.45
COL9A3-210ENST00000472880 ODF1Q14990 250 aa12.21□□□□□ -0.45
COL9A3-210ENST00000472880 OR10D4PQ8NGN7 298 aa12.21□□□□□ -0.45
COL9A3-210ENST00000472880 C9orf116Q5BN46 136 aaPredicted RBP12.2□□□□□ -0.46
COL9A3-210ENST00000472880 SPANXA1Q9NS26 97 aa12.2□□□□□ -0.46
COL9A3-210ENST00000472880 KRTAP10-8P60410 259 aa12.19□□□□□ -0.46
COL9A3-210ENST00000472880 RNF151Q2KHN1 245 aa12.19□□□□□ -0.46
COL9A3-210ENST00000472880 ORAOV1Q8WV07 137 aa12.19□□□□□ -0.46
COL9A3-210ENST00000472880 OPRPNQ99935 248 aaPredicted RBP12.19□□□□□ -0.46
COL9A3-210ENST00000472880 LAMTOR2Q9Y2Q5 125 aa12.19□□□□□ -0.46
COL9A3-210ENST00000472880 MT-ND6P03923 174 aa12.18□□□□□ -0.46
COL9A3-210ENST00000472880 C10orf91Q5T1B1 145 aa12.18□□□□□ -0.46
COL9A3-210ENST00000472880 IFITM10A6NMD0 228 aa12.17□□□□□ -0.46
COL9A3-210ENST00000472880 PRSS47A8MTI9 375 aa12.17□□□□□ -0.46
COL9A3-210ENST00000472880 PSORS1C2Q9UIG4 136 aa12.17□□□□□ -0.46
COL9A3-210ENST00000472880 TRAV9-1A0A075B6T8 112 aa12.16□□□□□ -0.46
COL9A3-210ENST00000472880 MRPS36P82909 103 aaKnown RBP12.16□□□□□ -0.46
COL9A3-210ENST00000472880 MAP1LC3AQ9H492 121 aa12.16□□□□□ -0.46
COL9A3-210ENST00000472880 MRPL35Q9NZE8 188 aaKnown RBP12.16□□□□□ -0.46
COL9A3-210ENST00000472880 CARHSP1Q9Y2V2 147 aaKnown RBP12.16□□□□□ -0.46
COL9A3-210ENST00000472880 IGHV3OR16-9A0A0B4J2B5 98 aa12.15□□□□□ -0.46
COL9A3-210ENST00000472880 F8WDY8 70 aa12.15□□□□□ -0.46
COL9A3-210ENST00000472880 NDUFA1O15239 70 aa12.15□□□□□ -0.46
COL9A3-210ENST00000472880 RAB5AP20339 215 aa12.15□□□□□ -0.46
COL9A3-210ENST00000472880 PHF5AQ7RTV0 110 aaKnown RBP12.15□□□□□ -0.46
COL9A3-210ENST00000472880 LOC389332A0A1B0GUA5 103 aa12.14□□□□□ -0.47
COL9A3-210ENST00000472880 S100PP25815 95 aa12.14□□□□□ -0.47
COL9A3-210ENST00000472880 C1orf137Q5JT78 98 aa12.14□□□□□ -0.47
COL9A3-210ENST00000472880 FAM104AQ969W3 186 aa12.14□□□□□ -0.47
COL9A3-210ENST00000472880 LRP2P98164 4655 aa12.13□□□□□ -0.47
COL9A3-210ENST00000472880 RHEBQ15382 184 aa12.13□□□□□ -0.47
COL9A3-210ENST00000472880 TGIF2-C20orf24A0A0A6YYL0 155 aa12.12□□□□□ -0.47
COL9A3-210ENST00000472880 IFI27P40305 119 aaPredicted RBP12.12□□□□□ -0.47
COL9A3-210ENST00000472880 Q8N8P6 123 aa12.12□□□□□ -0.47
COL9A3-210ENST00000472880 RPS10P5Q9NQ39 176 aa12.11□□□□□ -0.47
COL9A3-210ENST00000472880 TLX1NBP0CAT3 122 aa12.09□□□□□ -0.47
COL9A3-210ENST00000472880 KIAA1644Q3SXP7 199 aa12.09□□□□□ -0.47
COL9A3-210ENST00000472880 C10orf25Q5T742 122 aa12.09□□□□□ -0.47
COL9A3-210ENST00000472880 UNQ6190/PRO20217Q6UXQ8 127 aa12.09□□□□□ -0.47
COL9A3-210ENST00000472880 GNB1LQ9BYB4 327 aa12.08□□□□□ -0.48
COL9A3-210ENST00000472880 C6orf48Q9UBA6 75 aa12.08□□□□□ -0.48
COL9A3-210ENST00000472880 PYGO1Q9Y3Y4 419 aa12.08□□□□□ -0.48
COL9A3-210ENST00000472880 FAM168BA1KXE4 195 aa12.07□□□□□ -0.48
COL9A3-210ENST00000472880 K7EMI3 77 aa12.07□□□□□ -0.48
COL9A3-210ENST00000472880 ORMDL2Q53FV1 153 aa12.07□□□□□ -0.48
COL9A3-210ENST00000472880 FAM19A5Q7Z5A7 132 aaPredicted RBP12.07□□□□□ -0.48
COL9A3-210ENST00000472880 NXT2Q9NPJ8 142 aaKnown RBP12.07□□□□□ -0.48
COL9A3-210ENST00000472880 IGLV4-3A0A075B6K6 122 aa12.06□□□□□ -0.48
COL9A3-210ENST00000472880 A0A087WZ39 114 aa12.06□□□□□ -0.48
COL9A3-210ENST00000472880 IGLV7-43P04211 117 aa12.06□□□□□ -0.48
COL9A3-210ENST00000472880 COX19Q49B96 90 aa12.06□□□□□ -0.48
COL9A3-210ENST00000472880 GAGE2EQ4V326 116 aa12.06□□□□□ -0.48
COL9A3-210ENST00000472880 DIRC1Q969H9 104 aa12.06□□□□□ -0.48
COL9A3-210ENST00000472880 TMEM141Q96I45 108 aa12.06□□□□□ -0.48
COL9A3-210ENST00000472880 GAGE2DQ9UEU5 116 aa12.06□□□□□ -0.48
COL9A3-210ENST00000472880 APOC3P02656 99 aa12.05□□□□□ -0.48
COL9A3-210ENST00000472880 C2orf66Q6UXQ4 117 aa12.05□□□□□ -0.48
COL9A3-210ENST00000472880 CYSLTR1Q9Y271 337 aa12.05□□□□□ -0.48
COL9A3-210ENST00000472880 LINC00242Q5T6M2 205 aa12.04□□□□□ -0.48
COL9A3-210ENST00000472880 TEX43Q6ZNM6 134 aa12.04□□□□□ -0.48
COL9A3-210ENST00000472880 RNF213Q63HN8 5207 aa12.04□□□□□ -0.48
COL9A3-210ENST00000472880 KIAA0087Q14695 138 aa12.03□□□□□ -0.48
COL9A3-210ENST00000472880 NDUFA5Q16718 116 aa12.03□□□□□ -0.48
COL9A3-210ENST00000472880 C2orf88Q9BSF0 95 aa12.03□□□□□ -0.48
COL9A3-210ENST00000472880 TRBV30A0A0K0K1B3 111 aa12.02□□□□□ -0.49
COL9A3-210ENST00000472880 SVBPQ8N300 66 aa12.02□□□□□ -0.49
COL9A3-210ENST00000472880 PACRGQ96M98 296 aaPredicted RBP12.02□□□□□ -0.49
COL9A3-210ENST00000472880 ALKBH7Q9BT30 221 aaPredicted RBP12.02□□□□□ -0.49
COL9A3-210ENST00000472880 H0Y9J4 135 aa12.01□□□□□ -0.49
COL9A3-210ENST00000472880 M0QXV9 152 aa12.01□□□□□ -0.49
COL9A3-210ENST00000472880 SNAPINO95295 136 aa12.01□□□□□ -0.49
COL9A3-210ENST00000472880 UBE2BP63146 152 aa12.01□□□□□ -0.49
COL9A3-210ENST00000472880 C2orf82Q6UX34 121 aa12.01□□□□□ -0.49
COL9A3-210ENST00000472880 Q6ZN92 141 aa12.01□□□□□ -0.49
COL9A3-210ENST00000472880 MRPL18Q9H0U6 180 aaKnown RBP12.01□□□□□ -0.49
COL9A3-210ENST00000472880 UBE2D1P51668 147 aa12□□□□□ -0.49
COL9A3-210ENST00000472880 KRTAP11-1Q8IUC1 163 aa12□□□□□ -0.49
COL9A3-210ENST00000472880 PRR26Q8N8Z3 221 aa12□□□□□ -0.49
COL9A3-210ENST00000472880 IGIPA6NJ69 53 aa11.99□□□□□ -0.49
COL9A3-210ENST00000472880 NDUFC2-KCTD14E9PQ53 114 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms